TCONS_00011857 (transcript) - C. hemisphaerica

Overview


Name	TCONS_00011857
Unique Name	TCONS_00011857
Type	transcript
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	1599

Sequence

The following sequences are available for this feature:

transcript sequence
protein sequence
transcript from alignment at sc0000133:130647..135009-
coding sequence from alignment at sc0000133:130647..135009-

transcript sequence

>TCONS_00011857 ID=TCONS_00011857|Name=TCONS_00011857|organism=Clytia hemisphaerica|type=transcript|length=1599bp
CTGAATGAAAGCATAAAATTTTAATATTCAGAATTATTAAGAAAGAAGAT
CTTAAGACGGAAAAAGTCTTTGTTATTATAGTTGATATTTTGGATTTACT
CAATTTGTTTTCCTGGTGGACAATATAATTAATTGTTGATGGAAGAACGT
GAAAATGATGAATTTGCAGATGTTTCAACTACTATTAATGAAATCAACTC
GACCTTAAATGAACACTTATTTCTTGACAATTCTCTGCAAGAAAATAAAG
gtTCAGTATCCACATTTTTGAAGGACTTGTTATCAAAGCAAGCAGAATCA
CATAGGAAAATTCAAGAATTGCAACGATCAATCCAAGACAAGGAATATCA
GTCAACCTCAAGTGATATTTTCTCATCAACAAAAACTTTGGACGATCTGA
ACTTCCTGGAATCACCTGACGTTTCTTTGGCGCTTTTCATGaatgataat
gatgatgatattGATGAAGGATCACAACCAACATCGAATGATGAAGAAGT
CATCTCTGGTGGTGAATTGATTGAAGAATCACGCAGTTGTGTATCATCGT
CTTGTGGTGATTTCGACGAACTGACAACATTGGGAAGTTATAGAGAGATT
CCAAGTCCAATCGAAATAACGCCAAACCGGTCGCATATTGAAGATAAATT
TGTGAAAGATATAACGCCAACACGCACAAAAAGTGAGATCGACGTTGAAC
ACTTACTCACGAATTCTTTAGAAAACAAATCTCGGCAAGAAGATATACCG
TTATTGGAAAGCACTTTTATTATTAGTCAGTCTGTGGACTGTCATAATCT
TTCCGACAGTGATACGAATCAGACTACCGTTCCGTCTTTGAAGGATACAC
AATATACGAACGTTGGTGTTGTCTCTACTCTTGAAAGTGTCGCCAGTATT
TCAAGTGGTATTTATAGGAATATTGGAAGACAAAACCCAAAATCACCTTT
GGAAACATACAAACCCAACGATTGCAAGCCACCAGTAAATAACGGTGATG
AATTAGGGCTTTGTATTGATATAATGGCTGCACGAATCAAGGAATTAGAG
CTCGAAAAAGAACGCGTGAAATTGGATGTTATTGTGGCTTTGCGTAAACA
GTTTGAAAAACTTACAAATACGGATCATGAAATACACTGTGGTACGCTGG
AGAAATTGAACGATAGTGTTTGCGAAGTAGCCGTACAGGAAGTGGAGAAG
GTGCGTAACCAAGAGCGGGAGAGACGCTCCAAGATAGAGGAGGATTACCA
GAGAAAGGTTGACCAGCTAACTGATGAAGTCCGCGACTTACGGGTTGATA
AATCGACTCTCTTGGCTGAAGTGAGTGATACAAGACGCGGTCAGAGTTTA
GTTCAAGAGAAACAAGGGAAACTGGAGCGTTTACAAAATCGTGTTTCGTA
TTTGGAGAGTTTGCTGCGAACGGTTGAGAAGGATAATGAAAAGATGAAGC
AGAATTTAAAAGAGCTTGATTGTGAGAATTCGAAATTGTTGGTCGAAAAT
AAGACGCTGAGGAATGAAGTTGGAGATGTGTCGCATCAGTTGGAAGTATC
CAGGACTACTGAttctaaaatgaaagatttttatgaaaaagaacGTGAN

Run BLAST on NCBI

protein sequence of TCONS_00011857-protein

>TCONS_00011857-protein ID=TCONS_00011857-protein|Name=TCONS_00011857-protein|organism=Clytia hemisphaerica|type=polypeptide|length=487bp
MEERENDEFADVSTTINEINSTLNEHLFLDNSLQENKGSVSTFLKDLLSK
QAESHRKIQELQRSIQDKEYQSTSSDIFSSTKTLDDLNFLESPDVSLALF
MNDNDDDIDEGSQPTSNDEEVISGGELIEESRSCVSSSCGDFDELTTLGS
YREIPSPIEITPNRSHIEDKFVKDITPTRTKSEIDVEHLLTNSLENKSRQ
EDIPLLESTFIISQSVDCHNLSDSDTNQTTVPSLKDTQYTNVGVVSTLES
VASISSGIYRNIGRQNPKSPLETYKPNDCKPPVNNGDELGLCIDIMAARI
KELELEKERVKLDVIVALRKQFEKLTNTDHEIHCGTLEKLNDSVCEVAVQ
EVEKVRNQERERRSKIEEDYQRKVDQLTDEVRDLRVDKSTLLAEVSDTRR
GQSLVQEKQGKLERLQNRVSYLESLLRTVEKDNEKMKQNLKELDCENSKL
LVENKTLRNEVGDVSHQLEVSRTTDSKMKDFYEKERX

Run BLAST on NCBI

transcript from alignment at sc0000133:130647..135009-

Legend: exonfive_prime_UTRCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>TCONS_00011857 ID=TCONS_00011857|Name=TCONS_00011857|organism=Clytia hemisphaerica|type=transcript|length=4363bp|location=Sequence derived from alignment at sc0000133:130647..135009- (Clytia hemisphaerica)
CTGAATGAAAGCATAAAATTTTAATATTCAGAATTATTAAGAAAGAAGAT
CTTAAGACGGAAAAAGTCTTTGTTATTATAGTTGATATTTTGGATTTACT
CAATTTGTTTTCCTGGTGGACAATATAATTAATTGTTGATGGAAGAACGT
GAAAATGATGAATTTGCAGATGTTTCAACTACTATTAATGAAATCAACTC
GACCTTAAATGAACACTTATTTCTTGACAATTCTCTGCAAGAAAATAAAG
GTACATACTAACTCTTAAATTGACCCCCATTCACGAATTCACGCAAACCG
CTGGGATGCCCTATATCAATAGTTTTACACTGTATTGTTTATTCTGTTCC
CAGTTTATTTTCCTCTGATTGGGCTCTAGGCCCCCTCTAGGGGGTGGATA
ATTTCGGGGGTAGTGAAAAATCTACAAAATTTGCCTTGCTGAGGGGAGGG
GGGTAAACTTGATCTGCTTAGGGGTAATTTTGCTCTGTTTGAAGGTAATT
TTGATTGTCCATGGGGTCAACTATTGCTTGTCCAGGGGTAAATTTCCAAA
AAATGTTATCCTCCCAGATCCTCCAACCCCCGTATTCAAATTTTTTATGG
AAAAGCCCATTAGGGATCATTATCAAAATTGAAAATAATACTTTTTTACT
TTTCAGGTTCAGTATCCACATTTTTGAAGGACTTGTTATCAAAGCAAGCA
GAATCACATAGGAAAATTCAAGTTTGTTCCTTACTATCTCAGTTAACAAA
ATTATCCATTTCTTGTAAAATTTATCCTGATTTATTCATTGCATTGCTGC
CCTCGTCACCATGGTTTCTGCCTACTTTTCAGTCCCGCCTTAAAATGAAT
TTTGCCCTTAAAGAAAACTCCCTCTTTAAATCGAACAAAAATTATCAGTA
CCCCTTATTAGCAGTTACATCAAAATGCAAAAAAAAATTTTGTTCAACCA
CCTTCACTTCAAGATAGGCCACCATAGAATGAACTTCCTTTTATAGGATG
AGGAGTGCAAAGCTGAAAGCCACATGAATATGCTTCATCTTATAAAAGGA
AGTTCATTCTATGGTGGCCTATCTTGAAGTGAAGGTGGTTGACATGGGCC
CCGTCAGCGGGGGGGGGGGGGGGGATCCCCCCCCCCCCCCCCGCTGACGG
GGCCCATGTCAACCACCTTCACTTCAAGATAGGCCACCATAGAATGAACT
TCCTTTTATAGGATGAGGAGTGCAAAGCTGAAAGCCGCATGAATATGCTT
CATCTTATAAAAGGAAGTTCATTCTATGGGGGCCTATCTTGAAGTGAAGG
TGGTTGACATGGGCCCCGTCAAGGGGGGGGGGGGGTCCATGCCCCCCCCC
ACTTTTTGGTAGACCATGTCATACGTTTTTAAGAGCTACTATTTTAAGCT
GATTTGAGATCAAATCAAACTACAAAAACTATTATTTTCCCCAATTAGAT
ATCGTTTTAAGGTGTTTTGAGGGTGTAAAATGTGAAAAATTTTCTTTGTC
GCCCAACCATGGTGGTTTCCAAAATGTTGGCCCCCTCACTCAAAATGGCT
CGCCGGGGCCCATGTTGAACAAAATGTTTTTGGCATATTGATGTAACTGA
TTAGAATGCCCCCCCCTTAAAATAAAATAAGCAGTCCCCCTTAGATTTTT
TAATCCCCTTCAGCAAGCAATTTTTACAATTTTTAGAGAGAGTGGGAAGA
GAGGATGCAGATTGTGAGCATGAAAACGGGAAAGAAAATATTGGATAAAG
AAAATTATTATCGATAAACCAGATAGTAGGGGGCCAAGCCTGGGTGGGGT
CCCGTGGCATCTTTTTTACGACCTGGCAATTTTTAGTCTATTCCAAAGAA
CAGTATTACATAATACTTTTGAGAGGGAGGACGCAGATTAGGCCTGGGAA
AACTTAAAGTTAAAATAAACGAATATGATTGATACCATCTGATAGATCAT
GAAATTCTGAGTAAAAAAATGTTTTACAACAACTCTCTGACTAAAACACA
CAAAGAAATACAGCCGCTTGAAGTTGAAAAACATACTACGATCAAGACAA
GATTTGACGTCAAATCACAGTAGAGATTGACAGTTAGTTGGTCTCAATTT
TTTTACTCCCCCCTTATTTTAAGGGGGGGGGGCAGAAACCATAATCAAGC
AAACCTGTAAATCTTGGACCGTTTTACCAACCTCTTTAAACGTAGTAATT
TTATTTTGTAACTTTCTTAAAGGAATTGCAACGATCAATCCAAGACAAGG
AATATCAGGTAAGGATGAAAATTTTAGTCACATCTCATAAGGAAATTTCG
AGTGGATTGCAATTTCATATTTAAATTTTCAAAATACCATTACCGAGTGT
CTTTGACACTGACACTTGAAAAGTACAAAAGCACAGAAAATACATTTGAC
CGGAAAAGAAGGCTTTGTGTTGATCCCTTTCTTACCACCCCTTTTTTCTA
CTTAGAGTTTCCAGTCCCCCTACTTCTCGGTTTCTTCGTGAGCTAATCAT
TCTGCCCTTAAAGAAAAGGGGGTCGGACTATGTTTACAATACTTCGTTTC
GTCGTTGAAAAGTTACAATTAAATTGTTACCATCATCCAGTCAACCTCAA
GTGATATTTTCTCATCAACAAAAACTTTGGACGATCTGAACTTCCTGGAA
TCACCTGACGTTTCTTTGGCGCTTTTCATGAATGATAATGATGATGATAT
TGATGAAGGATCACAACCAACATCGAATGATGAAGAAGTCATCTCTGGTG
GTGAATTGATTGAAGAATCACGCAGTTGTGTATCATCGTCTTGTGGTGAT
TTCGACGAACTGACAACATTGGGAAGTTATAGAGAGATTCCAAGTCCAAT
CGAAATAACGCCAAACCGGTCGCGTAAGTTTCGATTTTATTTCGTTCTTT
CTTTCAATGGGTTTTGATTAGGAAAATACGGAGAAACATGTTGGCTTTTT
TTATAAAAGACAAATATGATAATAAAATGATACAAGAAGTGCGTAGTGAA
GTTAAAGTCAAAAAAGGGGAAAGGTTTGTCGATTGGTGGATGAACAGAAT
CTCTTTTTTTCTGCTGGAATGACAAAATTTGAATTTAAGTCGGACTTTTT
TTGTTGCACTATAATAGAGCCATTTTATTGTGGATTTTTGAAATCTGCTT
AATATTTTGCTCAATAATTTGTCAAATCATGTATACTAGTTATTCAAATT
AAGTAAATCTTTGTTTAACTTTTGAAGCAAATCTCTAAGGAGCGTAAGAT
TTAATTAACGCCAATTAAAAAGGCTTGGAGACGCTGTAAAATGTAGGATG
GAAAGTGGCAAAATATTTTTCTTCACTGAAACGTGTGTTATGTTTTATTT
GCTAAATAGATTCGAAATTACTTATTTTTTGCCTTTGTTTTACTTTAGAT
ATTGAAGATAAATTTGTGAAAGATATAACGCCAACACGCACAAAAAGTGA
GATCGACGTTGAACACTTACTCACGAATTCTTTAGAAAACAAATCTCGGC
AAGAAGATATACCGTTATTGGAAAGCACTTTTATTATTAGTCAGTCTGTG
GACTGTCATAATCTTTCCGACAGTGATACGAATCAGACTACCGTTCCGTC
TTTGAAGGATACACAATATACGAACGTTGGTGTTGTCTCTACTCTTGAAA
GTGTCGCCAGTATTTCAAGTGGTATTTATAGGAATATTGGAAGACAAAAC
CCAAAATCACCTTTGGAAACATACAAACCCAACGATTGCAAGCCACCAGT
AAATAACGGTGATGAATTAGGGCTTTGTATTGATATAATGGCTGCACGAA
TCAAGGAATTAGAGCTCGAAAAAGAACGCGTGAAATTGGATGTTATTGTG
GCTTTGCGTAAACAGTTTGAAAAACTTACAAATACGGATCATGAAATACA
CTGTGGTACGCTGGAGAAATTGAACGATAGTGTTTGCGAAGTAGCCGTAC
AGGAAGTGGAGAAGGTGCGTAACCAAGAGCGGGAGAGACGCTCCAAGATA
GAGGAGGATTACCAGAGAAAGGTTGACCAGCTAACTGATGAAGTCCGCGA
CTTACGGGTTGATAAATCGACTCTCTTGGCTGAAGTGAGTGATACAAGAC
GCGGTCAGAGTTTAGTTCAAGAGAAACAAGGGAAACTGGAGCGTTTACAA
AATCGTGTTTCGTATTTGGAGAGTTTGCTGCGAACGGTTGAGAAGGATAA
TGAAAAGATGAAGCAGAATTTAAAAGAGCTTGATTGTGAGAATTCGAAAT
TGTTGGTCGAAAATAAGACGCTGAGGAATGAAGTTGGAGATGTGTCGCAT
CAGTTGGAAGTATCCAGGACTACTGATTCTAAAATGAAAGATTTTTATGA
AAAAGAACGTGAN

Coding sequence (CDS) from alignment at sc0000133:130647..135009-

>TCONS_00011857 ID=TCONS_00011857|Name=TCONS_00011857|organism=Clytia hemisphaerica|type=CDS|length=1461bp|location=Sequence derived from alignment at sc0000133:130647..135009- (Clytia hemisphaerica)
ATGGAAGAACGTGAAAATGATGAATTTGCAGATGTTTCAACTACTATTAA
TGAAATCAACTCGACCTTAAATGAACACTTATTTCTTGACAATTCTCTGC
AAGAAAATAAAGGTTCAGTATCCACATTTTTGAAGGACTTGTTATCAAAG
CAAGCAGAATCACATAGGAAAATTCAAGAATTGCAACGATCAATCCAAGA
CAAGGAATATCAGTCAACCTCAAGTGATATTTTCTCATCAACAAAAACTT
TGGACGATCTGAACTTCCTGGAATCACCTGACGTTTCTTTGGCGCTTTTC
ATGAATGATAATGATGATGATATTGATGAAGGATCACAACCAACATCGAA
TGATGAAGAAGTCATCTCTGGTGGTGAATTGATTGAAGAATCACGCAGTT
GTGTATCATCGTCTTGTGGTGATTTCGACGAACTGACAACATTGGGAAGT
TATAGAGAGATTCCAAGTCCAATCGAAATAACGCCAAACCGGTCGCATAT
TGAAGATAAATTTGTGAAAGATATAACGCCAACACGCACAAAAAGTGAGA
TCGACGTTGAACACTTACTCACGAATTCTTTAGAAAACAAATCTCGGCAA
GAAGATATACCGTTATTGGAAAGCACTTTTATTATTAGTCAGTCTGTGGA
CTGTCATAATCTTTCCGACAGTGATACGAATCAGACTACCGTTCCGTCTT
TGAAGGATACACAATATACGAACGTTGGTGTTGTCTCTACTCTTGAAAGT
GTCGCCAGTATTTCAAGTGGTATTTATAGGAATATTGGAAGACAAAACCC
AAAATCACCTTTGGAAACATACAAACCCAACGATTGCAAGCCACCAGTAA
ATAACGGTGATGAATTAGGGCTTTGTATTGATATAATGGCTGCACGAATC
AAGGAATTAGAGCTCGAAAAAGAACGCGTGAAATTGGATGTTATTGTGGC
TTTGCGTAAACAGTTTGAAAAACTTACAAATACGGATCATGAAATACACT
GTGGTACGCTGGAGAAATTGAACGATAGTGTTTGCGAAGTAGCCGTACAG
GAAGTGGAGAAGGTGCGTAACCAAGAGCGGGAGAGACGCTCCAAGATAGA
GGAGGATTACCAGAGAAAGGTTGACCAGCTAACTGATGAAGTCCGCGACT
TACGGGTTGATAAATCGACTCTCTTGGCTGAAGTGAGTGATACAAGACGC
GGTCAGAGTTTAGTTCAAGAGAAACAAGGGAAACTGGAGCGTTTACAAAA
TCGTGTTTCGTATTTGGAGAGTTTGCTGCGAACGGTTGAGAAGGATAATG
AAAAGATGAAGCAGAATTTAAAAGAGCTTGATTGTGAGAATTCGAAATTG
TTGGTCGAAAATAAGACGCTGAGGAATGAAGTTGGAGATGTGTCGCATCA
GTTGGAAGTATCCAGGACTACTGATTCTAAAATGAAAGATTTTTATGAAA
AAGAACGTGAN

Gene-mRNA-Prot

This transcript is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
XLOC_006658	XLOC_006658	Clytia hemisphaerica	gene

The following polypeptide feature(s) derives from this transcript:


Feature Name	Unique Name	Species	Type
TCONS_00011857-protein	TCONS_00011857-protein	Clytia hemisphaerica	polypeptide

The following exon feature(s) are a part of this transcript:

Position

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
sc0000133	supercontig	sc0000133:130647..135009 -

Expression

Values :

    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
3.44568	3.41732	2.13853	1.2723	32.4924	28.1587	20.9831	20.7364	8.43122	7.83257	8.53444	6.25587	4.37179	3.5251	4.72476	6.47019	6.93937	7.26482	2.30623	3.15312	3.35178	3.3459	3.10207	3.79557	7.74648	6.7722	1.95988	0.633929	1.87896	1.76064

Blast

The following BLAST results are available for this feature:

BLAST of TCONS_00011857 vs. Swiss-Prot (Human)

BLAST of TCONS_00011857 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0


Match Name	E-value	Identity	Description

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TCONS_00011857 (transcript) - C. hemisphaerica