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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00011877 ID=TCONS_00011877|Name=TCONS_00011877|organism=Clytia hemisphaerica|type=transcript|length=1223bp
acaaaacaaaaaggcaTCGAGAATCACACAATAACAAACCACTACAAAGC
CTTTTTCTTACTTTCCTGATACCGACACAATACCAAATTTATTCTTCACT
TGAACTTGAAATCATACACTGCAAGCTCCAGGTAGATATCCAGACACTTG
AAATCATATACACTACAGTACAAGCTCCAGGTAGATATCTAGATAAAAGA
CACTCGAAAATCAAGGACCGTCGATTCAATCAGCCAAAAGAAACACTCAG
ATATCCAAGAAGAATAGAATAAAACCAAGCTACCAAACACCCAATCAATC
ATGAATCTCCACATCTTGTCTACCATTTTGGTTATTATAACCATAGTAAC
AGCAGCACCAAGTGCAAATTACCGTTCCCGAACCTTGGTTTATGAATCAT
GTATGCGTCAAGTGAACAGTCAAAAATCAACATGCATTGGAAATCTAGCC
CATCTTCCACACAGATTAATCTTCAAAACCTATTTAGCCTGTGTCAACAC
ATTCCAAGCCGGGAGAAGAGAATGCAATAAATGTAGATCATACATGAACA
GGCTAATGTNTAGCCTGTGTCAACACATTTCAAGCCGGGAGAAGAGAATG
CAACAAATGTAGATCATACATGAACAGGCTAATGTTAGCCAAATGTATGC
TCAGATATTCGGACCAAGAAGCAGATGagaaagttcaaaaattgtcatAA
GCTAATGCAACGGACCATTTCTGGAGTATTTTTATCAGTTAATAATTTCT
CTAATAATTCgagaaaatttttagtttttaggacaaaccaattgtaaaat
tgattttttaaaggtAGATTATGTAGAAATCATATTTTGACAGAATATAA
CGCTTCTAAAAAGGGATACAAAGTAATGTAATATTTAGAAATTCAAGTGA
AAACTAAGACCAAGTTCAGACGTTATGGATCGAGATCATATTAGTTTCAG
AACATtttggagcaagaaaacggagcattCCATTCCGATGAAAagagtgg
agcgaaaccgtttcgatcagTTTTActgtgtaacgtcttcttttttgacg
tttcgaatttttgaCGTTCACATTTGATTCAACCGTGAAGAACCGTGACG
TCAGAACATGGTCTAAATGTTAAGTGAGCTACTAGAGTAAGATGATCCTG
ACTATAACCGTTAATGTTTAGAGTacttttttccccaaaaaaccCTGATT
ATGTGTACATATAAAAAGCCTAG Run BLAST on NCBI transcript from alignment at sc0000133:410035..412322- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00011877 ID=TCONS_00011877|Name=TCONS_00011877|organism=Clytia hemisphaerica|type=transcript|length=2288bp|location=Sequence derived from alignment at sc0000133:410035..412322- (Clytia hemisphaerica)
ACAAAACAAAAAGGCATCGAGAATCACACAATAACAAACCACTACAAAGC
CTTTTTCTTACTTTCCTGATACCGACACAATACCAAATTTATTCTTCACT
TGAACTTGAAATCATACACTGCAAGCTCCAGGTAGATATCCAGACACTTG
AAATCATATACACTACAGTACAAGCTCCAGGTAGATATCTAGATAAAAGA
CACTCGAAAATCAAGGACCGTCGATTCAGTAAGTGTTTTAAGTCCAGTCT
TGTTAAAATTTCGAACTCGTAGGCTCCATTTTAAAAGGGGTGGTCAGATG
GTTAAAGATATTTGATATGTGGATTGTTAGACAAAAAAACTTGGAGGTTT
TTAGTCTGACTACAGAAGGCTTCTGGAGGTCGAATAACTCAAACCATCTT
AATATCACTTTGATAACGCTCAGACAAGGGGTAGTATCTTAAAATAGGGT
TAAGAGCTTGTAGGGGAAGACAAGACCTCTTTCCTCTAGTCTGCGTACCC
TTGATAGACACTCTCATTTGATTTATGTGCATTCAAGCATTAAGCAGTAT
CATTTTTTAAATTCATAGAACTGATAGAGTTTATCGTCTAAGCCCGTCTA
AGCCCTGCGCACAGTAACCGGTTGCGCGAGTTTCATTGCTTCAAATTGAT
TCCTGAAAAAGGCGCTTTGATATAATGCTCATTAAATTTGGTTGCTACAC
AGGCGACTAAGGTTCGATTCCCACTCACAGCAGCGCATTTGGCAACGAAC
CTTCGCACTGGTCATCCCATGTCACGTGAGGGATTTAGGTCCAAAGTGTT
ATCGGCACAGATATCTGTAAAGCCCGAAGGGCTAGATTTGCGGCTTTTAT
CGAAAAGTGAAGCCTAGGTTTGGAAGGATTTCCTACCAAAGTCACGTGAC
TAAAATATGCAATTTCACCGGTTTGAGAGATGTGAAATAGCGTTTGCCGC
CTACGTTATTTGATCTCGCGCTCCGAAAACAATTAAAATGCTAGATCCTA
TCCATCGGCACGAGTCAAATTTTTGCTTCACTTTTTTTTGCCGGAGAAAG
CTTAAAGTTGCCTATCTAGCCCTTCGGGCTTAGATATCTGTGGTTATCGG
GGCGCCTATTGAAAGCGTCTATAGTTGCGAAAATTGGCCTCGAAGCCTCT
AGGCTTCTGCTCATCCTCTAGCGAAAAAGGTGTCTGCATAGGAAGTATAT
CTATTGAGGTCTGCGATTCAGAAAAGCCTCCTGTCAGTTAACCAAATGAA
GAAAAAGTTTGAATTATCATATCATTTTCTCATACTTCCATAGATCAGCC
AAAAGAAACACTCAGATATCCAAGAAGAATAGAATAAAACCAAGCTACCA
AACACCCAATCAATCATGAATCTCCACATCTTGTCTACCATTTTGGTTAT
TATAACCATAGTAACAGCAGCACCAAGTGCAAATTACCGTTCCCGAACCT
TGGTTTATGAATCATGTATGCGTCAAGTGAACAGTCAAAAATCAACATGC
ATTGGAAATCTAGCCCATCTTCCACACAGATTAATCTTCAAAACCTATTT
AGCCTGTGTCAACACATTCCAAGCCGGGAGAAGAGAATGCAATAAATGTA
GATCATACATGAACAGGCTAATGTNTAGCCTGTGTCAACACATTTCAAGC
CGGGAGAAGAGAATGCAACAAATGTAGATCATACATGAACAGGCTAATGT
TAGCCAAATGTATGCTCAGATATTCGGACCAAGAAGCAGATGAGAAAGTT
CAAAAATTGTCATAAGCTAATGCAACGGACCATTTCTGGAGTATTTTTAT
CAGTTAATAATTTCTCTAATAATTCGAGAAAATTTTTAGTTTTTAGGACA
AACCAATTGTAAAATTGATTTTTTAAAGGTAGATTATGTAGAAATCATAT
TTTGACAGAATATAACGCTTCTAAAAAGGGATACAAAGTAATGTAATATT
TAGAAATTCAAGTGAAAACTAAGACCAAGTTCAGACGTTATGGATCGAGA
TCATATTAGTTTCAGAACATTTTGGAGCAAGAAAACGGAGCATTCCATTC
CGATGAAAAGAGTGGAGCGAAACCGTTTCGATCAGTTTTACTGTGTAACG
TCTTCTTTTTTGACGTTTCGAATTTTTGACGTTCACATTTGATTCAACCG
TGAAGAACCGTGACGTCAGAACATGGTCTAAATGTTAAGTGAGCTACTAG
AGTAAGATGATCCTGACTATAACCGTTAATGTTTAGAGTACTTTTTTCCC
CAAAAAACCCTGATTATGTGTACATATAAAAAGCCTAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00011877-exon-sc0000133-1575043694:412095..412322 | TCONS_00011877-exon-sc0000133-1575043694:412095..412322 | Clytia hemisphaerica | exon |
| TCONS_00011877-exon-sc0000133-1575043694:410035..411029 | TCONS_00011877-exon-sc0000133-1575043694:410035..411029 | Clytia hemisphaerica | exon |
| TCONS_00011877-exon-sc0000133-1510915933:412095..412322 | TCONS_00011877-exon-sc0000133-1510915933:412095..412322 | Clytia hemisphaerica | exon |
| TCONS_00011877-exon-sc0000133-1510915933:410035..411029 | TCONS_00011877-exon-sc0000133-1510915933:410035..411029 | Clytia hemisphaerica | exon |
| TCONS_00011877-exon-sc0000133-1491911889:412095..412322 | TCONS_00011877-exon-sc0000133-1491911889:412095..412322 | Clytia hemisphaerica | exon |
| TCONS_00011877-exon-sc0000133-1491911889:410035..411029 | TCONS_00011877-exon-sc0000133-1491911889:410035..411029 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000133 | supercontig | sc0000133:410035..412322 - |
Blast
The following BLAST results are available for this feature:
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