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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00011880 ID=TCONS_00011880|Name=TCONS_00011880|organism=Clytia hemisphaerica|type=transcript|length=2989bpRun BLAST on NCBI protein sequence of TCONS_00011880-protein >TCONS_00011880-protein ID=TCONS_00011880-protein|Name=TCONS_00011880-protein|organism=Clytia hemisphaerica|type=polypeptide|length=481bp MAADLEKLVARLEAVTGRLESAASRGGSSGGAAAGNDDPDWYDDYVAFHKRun BLAST on NCBI transcript from alignment at sc0000133:432371..448505- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00011880 ID=TCONS_00011880|Name=TCONS_00011880|organism=Clytia hemisphaerica|type=transcript|length=16135bp|location=Sequence derived from alignment at sc0000133:432371..448505- (Clytia hemisphaerica) Coding sequence (CDS) from alignment at sc0000133:432371..448505- >TCONS_00011880 ID=TCONS_00011880|Name=TCONS_00011880|organism=Clytia hemisphaerica|type=CDS|length=18798bp|location=Sequence derived from alignment at sc0000133:432371..448505- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00011880 vs. Swiss-Prot (Human)
Match: CAP1 (Adenylyl cyclase-associated protein 1 OS=Homo sapiens GN=CAP1 PE=1 SV=5) HSP 1 Score: 351.288 bits (900), Expect = 1.893e-109 Identity = 208/497 (41.85%), Postives = 292/497 (58.75%), Query Frame = 3
Query: 810 ADLEKLVARLEAVTGRLEXXXXXXXXXXXXXXXNDDPDWYDDYVAFHKENFDS--------FLKATEGLGGDVASIGKLVGNAFSAHKDVVTIAARNGRPSGSDLPTILIPLSNAITAVQEFRDANRKSAQFNHLSALSEAIPFLGWVSISPKPGQYVGQMEESAQFYTNKVLKEFKESDPKQADWARSLIKLLKATTQHVKDNHGTGLQWNKDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEEVDRSQLFAALNKGGAVTSGLKKVTNDMKTHKNPALRNQ-GPVAAAKAXXXXXXXXXXXXKFKKFNAPEV-----------KKPPKFELQDKKWIIEHQDGNQNLVIDRTNDKQAVYMYKCKNSVLQVQGKINSIVLDNCVKCGVVFTDLISTCEFINCQSVKAQANGYVPTISIDKTDGCQVFLNEKNLDVQIISAKSSEMNICINNEDGDLNEFPLPEQYKTVWDGKKFVTTVMDL 2240
AD++ LV RLE GRLE+ + G A D P A + + FDS +LK ++ +GGDV ++V + ++ A++ +P+ + L +L P+S I V FR+ NR S FNHLSA+SE+I LGWV+++PKPG YV +M ++A FYTN+VLKE+K+ D K DW ++ + + ++K+ H TGL W+K TG + G P PP PPP P S + E RS LFA +N+G ++T LK V++DMKTHKNPAL+ Q GPV + K F+AP+ K+P EL+ KKW +E+Q+ NLVI+ T KQ Y+YKC N+ LQ++GKINSI +DNC K G+VF D++ E IN + VK Q G VPTISI+KTDGC +L++ +LD +I+SAKSSEMN+ I E GD NEFP+PEQ+KT+W+G+K VTTV ++
Sbjct: 2 ADMQNLVERLERAVGRLEAVSHTSDMHRGYA---DSPS--KAGAAPYVQAFDSLLAGPVAEYLKISKEIGGDVQKHAEMVHTGLKLERALLVTASQCQQPAENKLSDLLAPISEQIKEVITFREKNRGSKLFNHLSAVSESIQALGWVAMAPKPGPYVKEMNDAAMFYTNRVLKEYKDVDKKHVDWVKAYLSIWTELQAYIKEFHTTGLAWSK-----TGPVAKELSGLPSGPSAGSCPPPPPPCPPPPPVSTISCSYESASRSSLFAQINQGESITHALKHVSDDMKTHKNPALKAQSGPVRSGP---------------KPFSAPKPQTSPSPKRATKKEPAVLELEGKKWRVENQENVSNLVIEDTELKQVAYIYKCVNTTLQIKGKINSITVDNCKKLGLVFDDVVGIVEIINSKDVKVQVMGKVPTISINKTDGCHAYLSKNSLDCEIVSAKSSEMNVLIPTEGGDFNEFPVPEQFKTLWNGQKLVTTVTEI 473 The following BLAST results are available for this feature:
BLAST of TCONS_00011880 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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