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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00011902 ID=TCONS_00011902|Name=TCONS_00011902|organism=Clytia hemisphaerica|type=transcript|length=2667bp
tccgaaAAAGATACTGTCCGGTAAAGTGAATCCAATGCTAGAATGGCGAA
TCCAATGTTGAATCCAATGTTGATCCGATGCTAAGTTCATTTTGGTCAAG
AATATTCATTCAACTTGAACAATTTACAGGTATCATTTCCTAAACAAAGT
TGTTTATGACATGAGAGAGGGAAATAGTCATTCAATTGACGAATTTTTAA
CGTTTAAAGTATTCAGTCTATGTATTTCTAAGCTTGGCCTCCGGCAGTGG
GTATGATCCATAAGgttcaaaaattaatttagaTGCTACCTGGCATCCAA
TACAACAATTgtggataaaaataattttcaaaatgggtGTGGTTATTTCA
GGCTAGAGGGAAATTCCCTCGAGAAATAATTCACGTATAATGATGACTTT
GTTGTTAGAGCTTTCTGGACAACTTGATTGATAGcagatattctttaaaa
gtaatttagaTGCTACCTGGCATCCAATATAACAATTgtggataaaaata
attttcaaaatgggtGTGGTTATCTCAGGCTAGAGGGAAATTCCCTCGAG
AAATAATTCACGTAAAATGATGACTTTGTTGTTAGAGTATTCTGGACAAT
TTGATTGATAGcagatattctttaaaagtaatttagaTGCTACCTGGCAT
CCAATATAACAATTgtggataaaaataattttcaaaattggtgTGGTTAT
CTCAGGCTAGAGGGAAATTCCCTTGAGAAATAATTCACGTAAATTGATGA
CTTTGTTGTTAGAGTATTCTGGACAACTTGATTGATAGcagatattcttt
aaaagtaatttagaTGCTACCTGGCATCCAATATAACAATTgtggataaa
aataattttcaaaatgggtGTGGTTAGCTCAGGCTAGAGGGAAATTCCCT
CGAGAAATAATTCACGTAAAATGATAACTTTGTTGTTAGAGCTTTCTGGA
CAACTTGATTGATGGcagatattctttaaaagtactTTAGATGCTACCTG
GTATCTAATGAAACAGTTCtgcataaaaataattttcaaaatgggtGTGG
TTATCTCAGGCTAGAGGGAAATTCCCTTGAGAAATAATTCACGTAAAATG
ATGACTTTGTTGTTAGAGCTTTCTGGACAACCTGATTGATGAcagatatt
ctttaaaagtaatttagaTGCTACCTGGCATccaatttaacaattttgga
taaaaataattttcaaaatgggtGTGGTTATCTCAGGCTAGAGGGAAATT
CCCTCGAGAAATAATTCACGTAAAATGATGACTTTGTTGTTAGAGTATTC
TGGACAATTTGATTGATAGcagatattctttaaaagtaatttagaTGCTA
CCTGGCATCCAATATAACAATTgtggataaaaataattttcaaaatgggt
GTGTTAGCTCAGGCTAGAGGGAAATTCCCTCGAGAAATAATTCACGTAAA
ATGTTAACTTTGTTGTTAGAGCTTTCTGGACAACTTGATTGATGGcagat
attctttaaaagtactTTAGATGCTACCTGGTATCTAATGAAACAGTTCt
gcataaaaataattttcaaaatgggtGTGGTTATCTCAGGCTAGAGGGAA
ATTCCCTTGAGAAATAATTCACGTAAAATGATGACTTTGTTGTTAGAGCT
TTCTAGACAACCTGATTGATGAcagatattctttaaaagtaatttagaTG
CTACCTGGCATCCAATTTAACAATTgtggataaaaataattttcaaaatg
ggtGTGGTTATCTCAGGCTAGAGGGAAATTCCCTCGAGAAATAATTCACG
TAAAATGATGACTTGGTTGTTAGAGTATTCTGGACAATTTGATTGATAGc
agatattctttaaaagtaatttagaTGCTACCTGGCATCCAATATAACAA
TTgtggataaaaataattttcaaaatgggtGTGGTTATTTCAGGCTAGAG
GGAAATTCCCTCGAGAAATAATTCACTCAAAATGATGACTTTGTTGTTAG
AGCTTTCTGGACAACTTGATTGATAGCAGATATTGATTTAGATTGATATA
GATATTGATTTGCTGCTTCGTATACAATGAAaccaaaaagtttgtttttt
atttatgaaTAATTTATATAGGAGCTGTTTAATTAAACTCTATCTCAACT
CAactctttttaacctttcatAAGTTTCTCATATAAAGCCAAAGCCTGTA
CAAACTTTTTTAGGCACATTGAATGATGTGTATAATTAGCCATTGCAATG
ATGTTGTATACGATAGTAAAATACATTAAATATACTGAAGTGATCAAGTA
AGTAAGTAACTTTTTTAAGAGCAACAGGATATTCCTCCAAGATTTTGGAA
ATTCTGATTACGTTTCGAAAGCACACAGGGCAAATAGTTATCCATAGTTT
CCACCCCCTATATTTAAGGGGtctttgattttgatgaaaccCAGGTTGGG
TTGGTTGGAAATAATATTGTTTCCCCGAATGAAAGCTTGTAGCTGTAGAG
GGAGGGAGGCAGTGTAGTCTTCCATTGGGTCAAGACACCTGAGAAATTTG
ATTACTACATTCCCCCGtattattttatcaaacaatAAACCTAATGTTCT
AAACCCAAAACGAAAACTCACTTTTCTTTTGAAgttattcatttattttt
ccAATTGTCCATATGTC Run BLAST on NCBI transcript from alignment at sc0000133:301541..304207 Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00011902 ID=TCONS_00011902|Name=TCONS_00011902|organism=Clytia hemisphaerica|type=transcript|length=2667bp|location=Sequence derived from alignment at sc0000133:301541..304207 (Clytia hemisphaerica)
GACATATGGACAATTggaaaaataaatgaataacTTCAAAAGAAAAGTGA
GTTTTCGTTTTGGGTTTAGAACATTAGGTTTattgtttgataaaataata
CGGGGGAATGTAGTAATCAAATTTCTCAGGTGTCTTGACCCAATGGAAGA
CTACACTGCCTCCCTCCCTCTACAGCTACAAGCTTTCATTCGGGGAAACA
ATATTATTTCCAACCAACCCAACCTGggtttcatcaaaatcaaagaCCCC
TTAAATATAGGGGGTGGAAACTATGGATAACTATTTGCCCTGTGTGCTTT
CGAAACGTAATCAGAATTTCCAAAATCTTGGAGGAATATCCTGTTGCTCT
TAAAAAAGTTACTTACTTACTTGATCACTTCAGTATATTTAATGTATTTT
ACTATCGTATACAACATCATTGCAATGGCTAATTATACACATCATTCAAT
GTGCCTAAAAAAGTTTGTACAGGCTTTGGCTTTATATGAGAAACTTatga
aaggttaaaaagagtTGAGTTGAGATAGAGTTTAATTAAACAGCTCCTAT
ATAAATTAttcataaataaaaaacaaactttttggtTTCATTGTATACGA
AGCAGCAAATCAATATCTATATCAATCTAAATCAATATCTGCTATCAATC
AAGTTGTCCAGAAAGCTCTAACAACAAAGTCATCATTTTGAGTGAATTAT
TTCTCGAGGGAATTTCCCTCTAGCCTGAAATAACCACacccattttgaaa
attatttttatccacAATTGTTATATTGGATGCCAGGTAGCAtctaaatt
acttttaaagaatatctgCTATCAATCAAATTGTCCAGAATACTCTAACA
ACCAAGTCATCATTTTACGTGAATTATTTCTCGAGGGAATTTCCCTCTAG
CCTGAGATAACCACacccattttgaaaattatttttatccacAATTGTTA
AATTGGATGCCAGGTAGCAtctaaattacttttaaagaatatctgTCATC
AATCAGGTTGTCTAGAAAGCTCTAACAACAAAGTCATCATTTTACGTGAA
TTATTTCTCAAGGGAATTTCCCTCTAGCCTGAGATAACCACacccatttt
gaaaattatttttatgcaGAACTGTTTCATTAGATACCAGGTAGCATCTA
AagtacttttaaagaatatctgCCATCAATCAAGTTGTCCAGAAAGCTCT
AACAACAAAGTTAACATTTTACGTGAATTATTTCTCGAGGGAATTTCCCT
CTAGCCTGAGCTAACACacccattttgaaaattatttttatccacAATTG
TTATATTGGATGCCAGGTAGCAtctaaattacttttaaagaatatctgCT
ATCAATCAAATTGTCCAGAATACTCTAACAACAAAGTCATCATTTTACGT
GAATTATTTCTCGAGGGAATTTCCCTCTAGCCTGAGATAACCACacccat
tttgaaaattatttttatccaaaattgttaaattggATGCCAGGTAGCAt
ctaaattacttttaaagaatatctgTCATCAATCAGGTTGTCCAGAAAGC
TCTAACAACAAAGTCATCATTTTACGTGAATTATTTCTCAAGGGAATTTC
CCTCTAGCCTGAGATAACCACacccattttgaaaattatttttatgcaGA
ACTGTTTCATTAGATACCAGGTAGCATCTAAagtacttttaaagaatatc
tgCCATCAATCAAGTTGTCCAGAAAGCTCTAACAACAAAGTTATCATTTT
ACGTGAATTATTTCTCGAGGGAATTTCCCTCTAGCCTGAGCTAACCACac
ccattttgaaaattatttttatccacAATTGTTATATTGGATGCCAGGTA
GCAtctaaattacttttaaagaatatctgCTATCAATCAAGTTGTCCAGA
ATACTCTAACAACAAAGTCATCAATTTACGTGAATTATTTCTCAAGGGAA
TTTCCCTCTAGCCTGAGATAACCAcaccaattttgaaaattatttttatc
cacAATTGTTATATTGGATGCCAGGTAGCAtctaaattacttttaaagaa
tatctgCTATCAATCAAATTGTCCAGAATACTCTAACAACAAAGTCATCA
TTTTACGTGAATTATTTCTCGAGGGAATTTCCCTCTAGCCTGAGATAACC
ACacccattttgaaaattatttttatccacAATTGTTATATTGGATGCCA
GGTAGCAtctaaattacttttaaagaatatctgCTATCAATCAAGTTGTC
CAGAAAGCTCTAACAACAAAGTCATCATTATACGTGAATTATTTCTCGAG
GGAATTTCCCTCTAGCCTGAAATAACCACacccattttgaaaattatttt
tatccacAATTGTTGTATTGGATGCCAGGTAGCAtctaaattaatttttg
aacCTTATGGATCATACCCACTGCCGGAGGCCAAGCTTAGAAATACATAG
ACTGAATACTTTAAACGTTAAAAATTCGTCAATTGAATGACTATTTCCCT
CTCTCATGTCATAAACAACTTTGTTTAGGAAATGATACCTGTAAATTGTT
CAAGTTGAATGAATATTCTTGACCAAAATGAACTTAGCATCGGATCAACA
TTGGATTCAACATTGGATTCGCCATTCTAGCATTGGATTCACTTTACCGG
ACAGTATCTTTttcgga
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00011902-exon-sc0000133-1491911889:301541..304207 | TCONS_00011902-exon-sc0000133-1491911889:301541..304207 | Clytia hemisphaerica | exon |
| TCONS_00011902-exon-sc0000133-1510915933:301541..304207 | TCONS_00011902-exon-sc0000133-1510915933:301541..304207 | Clytia hemisphaerica | exon |
| TCONS_00011902-exon-sc0000133-1575043694:301541..304207 | TCONS_00011902-exon-sc0000133-1575043694:301541..304207 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000133 | supercontig | sc0000133:301541..304207 . |
Blast
The following BLAST results are available for this feature:
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