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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00011951 ID=TCONS_00011951|Name=TCONS_00011951|organism=Clytia hemisphaerica|type=transcript|length=1247bp
CAAACAGTGGTTAGCAAACAATGCTCAATATTTTGTGCTGTTGGGAAAAC
AGCGGTTAACTGTTTGATATTTTGTAGAGTAGAAGATGTTAGATTTTCGT
TTGcggaaataacaaaaaaaaacgtgAGAATTGAAAATTGGTAATATGAT
TGAGCTGTTGTGatgtaaattttgatttatagattgaagattatttgaaa
attgcTAACTATAGCACATGCCATGTTTTCAGTTCACATTACGTACTTCC
TCTTATTGGCATTTGTCCATGGATTCGTTCAATCTGCCAACTTACTTGCC
GGTTTGAGATCAAAGAAACAAGAGATTTCAACAGTTTGCCCATTAGGATG
TCCAAGTTACTGTGAACCCGTATGCTCACCTACATGTTGTACACCGCCTA
TCCCGCCCCCTCCTCCACCACCAATATCATATTATTATCCCCTCCCACCC
GCTGGCGTACCTGGTATCAATGGAAATGTTGGTCCTCCAGGACCTGATGG
GCCACCAGGACCTCCAGGAATACCTGGTCCTCAAGGTGTAATTGGTCCAC
CAGGATGGCCTGGTGCAGCTGCAGGACCACAAGGACTCGATGGTCCTCAA
GGTCCACCTGGACCACAAGGAGTACCAGGACCTCCAGGTCCTCAAGGACC
CATCGGTGCACAAGGATCGCAAGGTTTACAAGGTCCACCAGctccaccac
caccaccgccGTCATGTCCAGGAATGTGTTCTTCTGCGTGTACCAGACAT
TGTCATCCTACGTGTTGTTCTGCCaggaaaagaagatttttaattGCTGA
ATGAGATTTTATTCATTAAGTATACAGCAATCTTAATGATATCCATACGA
TTTCATATTTTGGTTACAAGAGCCAGAAAGGAAGGATATTTAGAAGATAA
CCACTTTCTGACCTTCTATTTAGAAGATAACCTGACCAAGCTGGTACACA
AATGCTATCCGACGTTATACAGATGCTATAGACTTTTAATTCGACGTTTA
GAAATTGTAGCAGGAaagattatttttatttctatgtttttgagTTAATG
TAAAATTTACAGCTCCCATTAAAATGTTTTCGTAAATAACAGATGATTAT
ATATCTTTGACAATGAAATGTAATATTTTCTGTAATAATATATTTTCTAG
ACTCCAAAACTTAAATTTAACCTGACACATATATTTTTGAACAAACTTTG
GACCTAGAAATGAGTGTTATGTTAACCaacgtgattacgtgatttgg Run BLAST on NCBI protein sequence of TCONS_00011951-protein >TCONS_00011951-protein ID=TCONS_00011951-protein|Name=TCONS_00011951-protein|organism=Clytia hemisphaerica|type=polypeptide|length=193bp
MFSVHITYFLLLAFVHGFVQSANLLAGLRSKKQEISTVCPLGCPSYCEPV
CSPTCCTPPIPPPPPPPISYYYPLPPAGVPGINGNVGPPGPDGPPGPPGI
PGPQGVIGPPGWPGAAAGPQGLDGPQGPPGPQGVPGPPGPQGPIGAQGSQ
GLQGPPAPPPPPPSCPGMCSSACTRHCHPTCCSARKRRFLIAE Run BLAST on NCBI transcript from alignment at sc0000134:292008..294297+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00011951 ID=TCONS_00011951|Name=TCONS_00011951|organism=Clytia hemisphaerica|type=transcript|length=2290bp|location=Sequence derived from alignment at sc0000134:292008..294297+ (Clytia hemisphaerica)
CAAACAGTGGTTAGCAAACAATGCTCAATATTTTGTGCTGTTGGGAAAAC
AGCGGTTAACTGTTTGATATTTTGTAGAGTAGAAGATGTTAGATTTTCGT
TTGcggaaataacaaaaaaaaacgtgAGAATTGAAAATTGGTAATATGAT
TGAGCTGTTGTGatgtaaattttgatttatagattgaagattatttgaaa
attgcTAACTATAGGTAATTGATTCAAATTTTAGGTTTATCTTAAACATT
TTGTGCTTATTGCCGtctttttttgaacaaaatagTTGTGAGGGCTAGTT
TTAATTTGATCGGTTATTTAAGCTTAGTTTAATTGAGTTGAAGATTGGTA
GGGTagtcattgggcttttccagaaatagtccctGGCGCCCCTCCAGGGG
GTTCAATGCTATCTGAATATCCAAGGGGTAAGCAAGAGGGAGagaatatc
cagggggtacagGACGAAATGCATGAGTTTCCTCAAACCTTCTATCCACA
TGGACATCCAGGATATCTAGGGGGTCTTTATTTTTAAGCCAGACATCCAA
AAGGCTGCGGAAGTCGAAAAATAAATATTCCTCAACATATAGGGGGGAAG
GAAGGGGGTACGGAAAATTTATAGAAAAGCGCATTTGGATGAGAAAGAAT
GCATCTTTTCTTGCACCAAGCCAGGAGTAGATAATGGCTATGTTAATTGT
TGATCAACCTGTAATGACCCCCTGAAACTGCCACTTAGTATTGAGGACTT
AACCTTTAACCAGTGCAACAAAGTACAATAGACAATGGTTAAATCGGGTA
TCAGATCAGATCATTGTTATCGTTTTTTTGGTATGTCTAAAAATCTGACt
ttgttttagaattaaaaaatctttcttagagaagatgaaaataaacaaTA
CGTAATCCATCGTAAAGTGATTTTTCTTCTTATCCGCTTTCAGCACATGC
CATGTTTTCAGTTCACATTACGTACTTCCTCTTATTGGCATTTGTCCATG
GATTCGTTCAATCTGCCAACTTACTTGCCGGTGAGTCATCACatagaaaa
ataattgaatacacctttcccgagatGATTTTTCCCAGCATGAAAACGAG
ACGGGATACGGCCTCAATAATGGCAGAGTTGTTTTGGACACTGTCTCCTC
AGGCTTAcctcaattttcaaattcactTGCTTTGTAAATTACTCCCTATT
TATTTACCTTGCATAGGGTCATCTACATAGAGATGTGCCTGATCCTCTTT
GAAGATATATATTCTTATCAACCATACGAATGAGGTTTCGAATAAATTCG
ATTTTGaaagaataattttaaatcataCTATGATTATTCTTTAGGTTTGA
GATCAAAGAAACAAGAGATTTCAACAGTTTGCCCATTAGGATGTCCAAGT
TACTGTGAACCCGTATGCTCACCTACATGTTGTACACCGCCTATCCCGCC
CCCTCCTCCACCACCAATATCATATTATTATCCCCTCCCACCCGCTGGCG
TACCTGGTATCAATGGAAATGTTGGTCCTCCAGGACCTGATGGGCCACCA
GGACCTCCAGGAATACCTGGTCCTCAAGGTGTAATTGGTCCACCAGGATG
GCCTGGTGCAGCTGCAGGACCACAAGGACTCGATGGTCCTCAAGGTCCAC
CTGGACCACAAGGAGTACCAGGACCTCCAGGTCCTCAAGGACCCATCGGT
GCACAAGGATCGCAAGGTTTACAAGGTCCACCAGctccaccaccaccacc
gccGTCATGTCCAGGAATGTGTTCTTCTGCGTGTACCAGACATTGTCATC
CTACGTGTTGTTCTGCCaggaaaagaagatttttaattGCTGAATGAGAT
TTTATTCATTAAGTATACAGCAATCTTAATGATATCCATACGATTTCATA
TTTTGGTTACAAGAGCCAGAAAGGAAGGATATTTAGAAGATAACCACTTT
CTGACCTTCTATTTAGAAGATAACCTGACCAAGCTGGTACACAAATGCTA
TCCGACGTTATACAGATGCTATAGACTTTTAATTCGACGTTTAGAAATTG
TAGCAGGAaagattatttttatttctatgtttttgagTTAATGTAAAATT
TACAGCTCCCATTAAAATGTTTTCGTAAATAACAGATGATTATATATCTT
TGACAATGAAATGTAATATTTTCTGTAATAATATATTTTCTAGACTCCAA
AACTTAAATTTAACCTGACACATATATTTTTGAACAAACTTTGGACCTAG
AAATGAGTGTTATGTTAACCaacgtgattacgtgatttgg Coding sequence (CDS) from alignment at sc0000134:292008..294297+ >TCONS_00011951 ID=TCONS_00011951|Name=TCONS_00011951|organism=Clytia hemisphaerica|type=CDS|length=582bp|location=Sequence derived from alignment at sc0000134:292008..294297+ (Clytia hemisphaerica)
ATGTTTTCAGTTCACATTACGTACTTCCTCTTATTGGCATTTGTCCATGG
ATTCGTTCAATCTGCCAACTTACTTGCCGGTTTGAGATCAAAGAAACAAG
AGATTTCAACAGTTTGCCCATTAGGATGTCCAAGTTACTGTGAACCCGTA
TGCTCACCTACATGTTGTACACCGCCTATCCCGCCCCCTCCTCCACCACC
AATATCATATTATTATCCCCTCCCACCCGCTGGCGTACCTGGTATCAATG
GAAATGTTGGTCCTCCAGGACCTGATGGGCCACCAGGACCTCCAGGAATA
CCTGGTCCTCAAGGTGTAATTGGTCCACCAGGATGGCCTGGTGCAGCTGC
AGGACCACAAGGACTCGATGGTCCTCAAGGTCCACCTGGACCACAAGGAG
TACCAGGACCTCCAGGTCCTCAAGGACCCATCGGTGCACAAGGATCGCAA
GGTTTACAAGGTCCACCAGctccaccaccaccaccgccGTCATGTCCAGG
AATGTGTTCTTCTGCGTGTACCAGACATTGTCATCCTACGTGTTGTTCTG
CCaggaaaagaagatttttaattGCTGAATGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00011951-exon-sc0000134-1491911889:292008..292221 | TCONS_00011951-exon-sc0000134-1491911889:292008..292221 | Clytia hemisphaerica | exon |
| TCONS_00011951-exon-sc0000134-1510915933:292008..292221 | TCONS_00011951-exon-sc0000134-1510915933:292008..292221 | Clytia hemisphaerica | exon |
| TCONS_00011951-exon-sc0000134-1575043694:292008..292221 | TCONS_00011951-exon-sc0000134-1575043694:292008..292221 | Clytia hemisphaerica | exon |
| TCONS_00011951-exon-sc0000134-1491911889:292951..293037 | TCONS_00011951-exon-sc0000134-1491911889:292951..293037 | Clytia hemisphaerica | exon |
| TCONS_00011951-exon-sc0000134-1510915933:292951..293037 | TCONS_00011951-exon-sc0000134-1510915933:292951..293037 | Clytia hemisphaerica | exon |
| TCONS_00011951-exon-sc0000134-1575043694:292951..293037 | TCONS_00011951-exon-sc0000134-1575043694:292951..293037 | Clytia hemisphaerica | exon |
| TCONS_00011951-exon-sc0000134-1491911889:293352..294297 | TCONS_00011951-exon-sc0000134-1491911889:293352..294297 | Clytia hemisphaerica | exon |
| TCONS_00011951-exon-sc0000134-1510915933:293352..294297 | TCONS_00011951-exon-sc0000134-1510915933:293352..294297 | Clytia hemisphaerica | exon |
| TCONS_00011951-exon-sc0000134-1575043694:293352..294297 | TCONS_00011951-exon-sc0000134-1575043694:293352..294297 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000134 | supercontig | sc0000134:292008..294297 + |
Blast
The following BLAST results are available for this feature:
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