TCONS_00011959 (transcript) - C. hemisphaerica

Overview
NameTCONS_00011959
Unique NameTCONS_00011959
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1841

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00011959 ID=TCONS_00011959|Name=TCONS_00011959|organism=Clytia hemisphaerica|type=transcript|length=1841bp
CAGCGTTTTATGTTGACACTTCATGATAATTTTGGTGTTCATAGAACAAA
TTTAAATAAACCCTTCAGTAATCTTGTTATTTCACACTAACTGACTCTTA
TAATTCtagtattgaaaaaaaatgaatgacTCACTTTTGCAATCAGAATC
AATTTTTGTTCCTTTGGACACAAGTATGGATATCGACACCATCGCTTCGC
AGAGCTTTTTGATCAACTCGTTTGAAACAGATGTACCACACAGTGTGATC
TCAAAGCCAAAAACTCCACAAAAAATAACCATGACTCAAGAGCAGGCTTT
TAAATTGCTTCACATTGCAGCCTCAATCATCCAAAGTAAATTCAAAGGTT
ATCTACAACGAAAGCGTTACCAGAGCTTGTTGAAGGAAAATAAAGCAGCT
ACGAAGATCCAAGCTTTGTGGCGTGGCTACCGGACAAGAAATCTTGACGT
AAAAATCATTAAGATAAAACATGATTTACTTGCTAAGAAATTTCATGAAT
ATATACTATCACAAGAAGAGCAAAGAGATATGTTAATAAATGTTATGCTT
GAATTATCAAGAAATCTTCAAGAATTGAAAATGACAAACAACCCTACTAC
ATCAGTAGCTGAAAAACCATCACCAGAACCTGAAGCTAGTCAAAACAATA
ACTCAGATTCAAGATTAACAATAGATCAGATCACAGATATCAGAACTGAC
ACCACTGTTCTAGACGATTCTCTAGAAGATGTGCCAGAAAATGAATTTAA
TGATGAATACGAAAATACAAACTGTGTGCCTTTGGAAACAAATAGTGCTA
CAAATTCTGTTGATAAAACCCCTTTGGAGAGGAGTACTGTTCCGTGCCCA
TCTAATGCCGAGTCCTCTTTGGTGGAAAATAACATTACTAATTCACCAAG
TGAGAAATTCTCTTTGGTGATGAATAATGTTACAAATTGTTCTCCGGAAG
AAGCTTTACCAGAGCCGAATTCACCAGAAAAAGCTCCATTAGACTTTAAC
ACAGACAGTGATGATGAAATTGATACCGAAGATGAGTTACCACAAGTCCT
GAGAATGAGGAATCAGAAACCATCTAATGATCGTCCTCCAAAAGAACTAA
GGACGAATGATTCAGGGGAAAAGAATGTTAATGATGACTCAGCTGTCGAG
AAAGATACAACAACTTCACCAGTAGAATTGAATAACATTGTGATCACCAT
CTCCTCCTCTGATGACGATGATTGATTTTGTAATGTTTTTAACGGACTGT
CTTGTATTTACTCTAAAATTTATGTTTTCTTGTGAGAGGGTACTGTTGAT
TGATTCTTGAGTTAAATTTCCGATTTTACTTAGCAATATGTAGCTGCGAA
ATCTCAAGATACTGCTAACCGCATGGACACAGTCTTTTAAACACCCAGAC
CAGCCCCGACTCCTTTTTCGACCCATGTCCTTCCTTTACAATGTTAGTTT
TTTTCCGCTAAAAATATTCGTCCTTTTAAGTGTTTTCCAAGACCACCAAC
TACATCTTACATCCTtacttattttttcttttttaataaaatgtcCCAAA
CCCCATTTTCTGATCTCTATTTTTACCTATAAGCAATATACTATACACTT
GTTAGAAACGATGATGGTATTCTTTCTTACTTTTTACTGCTATATCCATC
CATGCATTGTACATATGTTGTATTGAGTGTTCATAAAACTACTATTCTTC
TATTTATTGATAAGATAGCTATATACCTAGATTCTTTTTAGACTTAATTT
TATAACTATTTTGAATATATATTTGATgcaaaataataacaatttatGTT
TCCTTCACTATGGTTTGAAAGTAAGGGCATTAGGAAAGGAT
Run BLAST on NCBI

protein sequence of TCONS_00011959-protein

>TCONS_00011959-protein ID=TCONS_00011959-protein|Name=TCONS_00011959-protein|organism=Clytia hemisphaerica|type=polypeptide|length=367bp
MNDSLLQSESIFVPLDTSMDIDTIASQSFLINSFETDVPHSVISKPKTPQ
KITMTQEQAFKLLHIAASIIQSKFKGYLQRKRYQSLLKENKAATKIQALW
RGYRTRNLDVKIIKIKHDLLAKKFHEYILSQEEQRDMLINVMLELSRNLQ
ELKMTNNPTTSVAEKPSPEPEASQNNNSDSRLTIDQITDIRTDTTVLDDS
LEDVPENEFNDEYENTNCVPLETNSATNSVDKTPLERSTVPCPSNAESSL
VENNITNSPSEKFSLVMNNVTNCSPEEALPEPNSPEKAPLDFNTDSDDEI
DTEDELPQVLRMRNQKPSNDRPPKELRTNDSGEKNVNDDSAVEKDTTTSP
VELNNIVITISSSDDDD
Run BLAST on NCBI

transcript from alignment at sc0000134:397334..400039+

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00011959 ID=TCONS_00011959|Name=TCONS_00011959|organism=Clytia hemisphaerica|type=transcript|length=2706bp|location=Sequence derived from alignment at sc0000134:397334..400039+ (Clytia hemisphaerica)
CAGCGTTTTATGTTGACACTTCATGATAATTTTGGTGTTCATAGAACAAA
TTTAAATAAACCCTTCAGTAATCTTGTTATTTCACACTAACTGACTCTTA
TAATTCtagtattgaaaaaaaatgaatgacTCACTTTTGCAATCAGAATC
AATTTTTGTTCCTTTGGACACAAGTATGGATATCGACACCATCGCTTCGC
AGAGCTTTTTGATCAACTCGTTTGAAACAGATGTACCACACAGTGTGATC
TCAAAGCCAAAAACTCCACAAAAAATAACCATGACTCAAGAGCAGGCTTT
TAAATTGCTTCACATTGCAGCCTCAATCATCCAAAGTAAATTCAAAGGTT
ATCTACAACGAAAGCGTTACCAGAGCTTGTTGAAGGAAAATAAAGCAGCT
ACGAAGATCCAAGCTTTGTGGCGTGGCTACCGGACAAGAAATCTTGACGT
AAAAATCATTAAGATAAAACATGATTTACTTGCTAAGAAATTTCATGAAT
ATATACTATCACAAGAAGAGCAAAGAGATATGTTAATAAATGTTATGCTT
GAATTATCAAGAAATCTTCAAGAATTGAAAATGACAAACAACCCTACTAC
ATCAGTAGCTGAAAAACCATCACCAGAACCTGAAGCTAGTCAAAACAATA
ACTCAGATTCAAGATTAACAATAGATCAGATCACAGATATCAGAACTGAC
ACCACTGTTCTAGACGATTCTCTAGAAGATGTGCCAGAAAATGAATTTAA
TGATGAATACGAAAATACAAACTGTGTGCCTTTGGAAACAAATAGTGCTA
CAAATTCTGTTGATAAAACCCCTTTGGAGAGGAGTACTGTTCCGTGCCCA
TCTAATGCCGAGTCCTCTTTGGTGGAAAATAACATTACTAATTCACCAAG
TGAGAAATTCTCTTTGGTGATGAATAATGTTACAAATTGTTCTCCGGAAG
AAGCTTTACCAGAGCCGAATTCACCAGAAAAAGGTCCATTAGACTATATC
ACAGACAGTGATGATGAAATTGATACCGAAGATGAGTTACCACAAGTCCT
GAGAATGAGGAATCAGAAACCATCTAATGATCGTCCTCCAAAAGAACTAA
GGACGAATGATTCAGGGGAAAAGAATNACTCCACAAAAAATAACCATGAC
TCAAGAGCAGGCTTTTAAATTGCTTCACATTGCAGCCTCAATCATCCAAA
GTAAATTCAAAGGTTATCTACAACGAAAGCGTTACCAGAGCTTGTTGAAG
GAAAATAAAGCAGCTACGAAGATCCAAGCTTTGTGGCGTGGCTACCGGAC
AAGAAATCTTGACGTAAAAATCATTAAGATAAAACATGATTTACTTGCTA
AGAAATTTCATGAATATATACTATCACAAGAAGAGCAAAGAGATATGTTA
ATAAATGTTATGCTTGAATTATCAAGAAATCTTCAAGAATTGAAAATGAC
AAACAACCCTACTACATCAGTAGCTGAAAAACCATCACCAGAACCTGAAG
CTAGTCAAAACAATAACTCAGATTCAAGATTAACAATAGATCAAATCACT
GATATCAGAACTGACACCACTGTTCTAGACGATTCTCTAGAAGATGTGCC
AGAAAATGAATTTAATGATGAATACGAAAATACAAACTGTGTGCCTTTGG
AAACAAATAGTGCTACAAATTCTGTTGATAAAACCCCTTTGGAGAGGAGT
ACTGTTCCGTGCCCATCTAATGCCGAGTCCTCTTTGGTGGAAAATAACAT
TACTAATTCACCAAGTGAGAAACTTCCTTTGGTGATGAATAATGTTACAA
ATTGTTCTCCTGAAGAAGCTTCACCAGAGATGAATTCACCAGAAAAAGCT
CCATTAGACTTTAACACAGACAGTGATGATGAAATTGATACCGAAGATGA
GTTACCACAAGTCCTGAGAATGAGGAATCAGAAACCATCTAATGATCGTC
CTCCAAAAGAACTAAGGACGAATGATTCAGGGGAAAAGAATGTTAATGAT
GACTCAGCTGTCGAGAAAGATACAACAACTTCACCAGTAGAATTGAATAA
CATTGTGATCACCATCTCCTCCTCTGATGACGATGATTGATTTTGTAATG
TTTTTAACGGACTGTCTTGTATTTACTCTAAAATTTATGTTTTCTTGTGA
GAGGGTACTGTTGATTGATTCTTGAGTTAAATTTCCGATTTTACTTAGCA
ATATGTAGCTGCGAAATCTCAAGATACTGCTAACCGCATGGACACAGTCT
TTTAAACACCCAGACCAGCCCCGACTCCTTTTTCGACCCATGTCCTTCCT
TTACAATGTTAGTTTTTTTCCGCTAAAAATATTCGTCCTTTTAAGTGTTT
TCCAAGACCACCAACTACATCTTACATCCTtacttattttttctttttta
ataaaatgtcCCAAACCCCATTTTCTGATCTCTATTTTTACCTATAAGCA
ATATACTATACACTTGTTAGAAACGATGATGGTATTCTTTCTTACTTTTT
ACTGCTATATCCATCCATGCATTGTACATATGTTGTATTGAGTGTTCATA
AAACTACTATTCTTCTATTTATTGATAAGATAGCTATATACCTAGATTCT
TTTTAGACTTAATTTTATAACTATTTTGAATATATATTTGATgcaaaata
ataacaatttatGTTTCCTTCACTATGGTTTGAAAGTAAGGGCATTAGGA
AAGGAT

Coding sequence (CDS) from alignment at sc0000134:397334..400039+

>TCONS_00011959 ID=TCONS_00011959|Name=TCONS_00011959|organism=Clytia hemisphaerica|type=CDS|length=2208bp|location=Sequence derived from alignment at sc0000134:397334..400039+ (Clytia hemisphaerica)
atgaatgacTCACTTTTGCAATCAGAATCAATTTTTGTTCCTTTGGACAC
AAGTATGGATATCGACACCATCGCTTCGCAGAGCTTTTTGATCAACTCGT
TTGAAACAGATGTACCACACAGTGTGATCTCAAAGCCAAAAACTCCACAA
AAAATAACCATGACTCAAGAGCAGGCTTTTAAATTGCTTCACATTGCAGC
CTCAATCATCCAAAGTAAATTCAAAGGTTATCTACAACGAAAGCGTTACC
AGAGCTTGTTGAAGGAAAATAAAGCAGCTACGAAGATCCAAGCTTTGTGG
CGTGGCTACCGGACAAGAAATCTTGACGTAAAAATCATTAAGATAAAACA
TGATTTACTTGCTAAGAAATTTCATGAATATATACTATCACAAGAAGAGC
AAAGAGATATGTTAATAAATGTTATGCTTGAATTATCAAGAAATCTTCAA
GAATTGAAAATGACAAACAACCCTACTACATCAGTAGCTGAAAAACCATC
ACCAGAACCTGAAGCTAGTCAAAACAATAACTCAGATTCAAGATTAACAA
TAGATCAGATCACAGATATCAGAACTGACACCACTGTTCTAGACGATTCT
CTAGAAGATGTGCCAGAAAATGAATTTAATGATGAATACGAAAATACAAA
CTGTGTGCCTTTGGAAACAAATAGTGCTACAAATTCTGTTGATAAAACCC
CTTTGGAGAGGAGTACTGTTCCGTGCCCATCTAATGCCGAGTCCTCTTTG
GTGGAAAATAACATTACTAATTCACCAAGTGAGAAATTCTCTTTGGTGAT
GAATAATGTTACAAATTGTTCTCCGGAAGAAGCTTTACCAGAGCCGAATT
CACCAGAAAAAGCTCCATTAGACTTTAACACAGACAGTGATGATGAAATT
GATACCGAAGATGAGTTACCACAAGTCCTGAGAATGAGGAATCAGAAACC
ATCTAATGATCGTCCTCCAAAAGAACTAAGGACGAATGATTCAGGGGAAA
AGAATGTTAATGATGACTCAGCTGTCGAGAAAGATACAACAACTTCACCA
GTAGAATTGAATAACATTGTGATCACCATCTCCTCCTCTGATGACGATGA
TTGAatgaatgacTCACTTTTGCAATCAGAATCAATTTTTGTTCCTTTGG
ACACAAGTATGGATATCGACACCATCGCTTCGCAGAGCTTTTTGATCAAC
TCGTTTGAAACAGATGTACCACACAGTGTGATCTCAAAGCCAAAAACTCC
ACAAAAAATAACCATGACTCAAGAGCAGGCTTTTAAATTGCTTCACATTG
CAGCCTCAATCATCCAAAGTAAATTCAAAGGTTATCTACAACGAAAGCGT
TACCAGAGCTTGTTGAAGGAAAATAAAGCAGCTACGAAGATCCAAGCTTT
GTGGCGTGGCTACCGGACAAGAAATCTTGACGTAAAAATCATTAAGATAA
AACATGATTTACTTGCTAAGAAATTTCATGAATATATACTATCACAAGAA
GAGCAAAGAGATATGTTAATAAATGTTATGCTTGAATTATCAAGAAATCT
TCAAGAATTGAAAATGACAAACAACCCTACTACATCAGTAGCTGAAAAAC
CATCACCAGAACCTGAAGCTAGTCAAAACAATAACTCAGATTCAAGATTA
ACAATAGATCAGATCACAGATATCAGAACTGACACCACTGTTCTAGACGA
TTCTCTAGAAGATGTGCCAGAAAATGAATTTAATGATGAATACGAAAATA
CAAACTGTGTGCCTTTGGAAACAAATAGTGCTACAAATTCTGTTGATAAA
ACCCCTTTGGAGAGGAGTACTGTTCCGTGCCCATCTAATGCCGAGTCCTC
TTTGGTGGAAAATAACATTACTAATTCACCAAGTGAGAAATTCTCTTTGG
TGATGAATAATGTTACAAATTGTTCTCCGGAAGAAGCTTTACCAGAGCCG
AATTCACCAGAAAAAGCTCCATTAGACTTTAACACAGACAGTGATGATGA
AATTGATACCGAAGATGAGTTACCACAAGTCCTGAGAATGAGGAATCAGA
AACCATCTAATGATCGTCCTCCAAAAGAACTAAGGACGAATGATTCAGGG
GAAAAGAATGTTAATGATGACTCAGCTGTCGAGAAAGATACAACAACTTC
ACCAGTAGAATTGAATAACATTGTGATCACCATCTCCTCCTCTGATGACG
ATGATTGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_006710XLOC_006710Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00011959-proteinTCONS_00011959-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00011959-exon-sc0000134-1491911889:397334..398316TCONS_00011959-exon-sc0000134-1491911889:397334..398316Clytia hemisphaericaexon
TCONS_00011959-exon-sc0000134-1510915933:397334..398316TCONS_00011959-exon-sc0000134-1510915933:397334..398316Clytia hemisphaericaexon
TCONS_00011959-exon-sc0000134-1575043694:397334..398316TCONS_00011959-exon-sc0000134-1575043694:397334..398316Clytia hemisphaericaexon
TCONS_00011959-exon-sc0000134-1491911889:399182..400039TCONS_00011959-exon-sc0000134-1491911889:399182..400039Clytia hemisphaericaexon
TCONS_00011959-exon-sc0000134-1510915933:399182..400039TCONS_00011959-exon-sc0000134-1510915933:399182..400039Clytia hemisphaericaexon
TCONS_00011959-exon-sc0000134-1575043694:399182..400039TCONS_00011959-exon-sc0000134-1575043694:399182..400039Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000134supercontigsc0000134:397334..400039 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
10.2919	11.4238	8.23086	7.84904	19.5004	16.0829	15.0232	16.6871	8.14707	8.20839	8.38853	5.16	5.44563	4.79884	4.85348	4.61309	6.28789	5.53847	4.00697	4.02866	5.91924	5.94991	11.3902	11.4924	7.98732	9.33772	9.85287	5.45079	8.21156	8.25494
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR000048IQ_motif_EF-hand-BS
IPR027417P-loop_NTPase
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0005515 protein binding
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00011959 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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