TCONS_00011961 (transcript) - C. hemisphaerica

Overview
NameTCONS_00011961
Unique NameTCONS_00011961
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1138

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00011961 ID=TCONS_00011961|Name=TCONS_00011961|organism=Clytia hemisphaerica|type=transcript|length=1138bp
tccagatctaaagatataaaaaatacattttccaGATAGACACtatgaaa
aattaaatcaagCTATCAAAAAGGATCAAAGATGTTATCACGAGCACTGA
AGGAACACACTTCAAATCAAACTGTCATCAAGGAACAACAAGaGGAACGC
AAGAAAGTAGCCCTGAAAGCTGTCAAGGATTTTTCTGGAAGACTTGTTGA
TTTACTGAATGCCGAcGTGGAGAAAGCATACAACAATCAGCGTGCTCTTG
AAAACGAGGCTAAGATTCTACAACAACACGTCAATCAATTGTCAAAACAA
ACAATGCAATGGGCTACCATGTTGgaaaatttcaaccaatcacTGAAGGA
GTTAGGTGATGTAGAGAACTGGGCACGAACCATTGAAACAGACATTACAA
CAATAGCATCAGCATTGGAATATGCATACAAAGgGGATGGGCCAACGGAC
GAGTCAATACAATAATCGGCATAATGGAGTTGTATGCATTGCTGTATAAT
TAGAAATAAGGAGGAATGCTTATACATGGAGAAAGGCTGGCATTCCTAAT
ATGACAAAGAGTTTAATGCTCAACCATAATAATAATTCCATCATAAACGT
TATTAGTTGCATTTATTAGGCATAACAAGAGACTCGAACCTCAATGTTTT
TCATCGAAATTTTAGTGGGACAATTCTTGATGTATTGAATTCGTATAATA
TCATTGTCCTTGAATAGTAAAGATTTTTGGACaatatcaaataatttttt
tgctttttaatttGAATCCTGGATAATGGTTGAAGAAATTCTTTCCTGAC
GTACTGATTCTCTTTTTTTGATTGATCTGAAATTGTCTACCTCTGAATAA
ATGTTCAGTTGAAAGCCTTGAATATCTATATATTTAAAGTGTCCCAAAAA
TCTGTCATTTGTCAAAATCTTTATAACATGATTGAAAACTTCAATCCTAT
TGCCATagggaatttaatttattcAGTTAGATTTCAATAGACACGTAGGA
TTTTTGGACATATTATCGGCGCTGCATTCAAAATtagtagaaaattaaaa
aacaagttttgtaaataaaagtaatTTGAATTCTAAATAATGAATAACAA
TAATGaataacaatttttgaaaagaaaatgcaCAAttg
Run BLAST on NCBI

protein sequence of TCONS_00011961-protein

>TCONS_00011961-protein ID=TCONS_00011961-protein|Name=TCONS_00011961-protein|organism=Clytia hemisphaerica|type=polypeptide|length=127bp
MLSRALKEHTSNQTVIKEQQEERKKVALKAVKDFSGRLVDLLNADVEKAY
NNQRALENEAKILQQHVNQLSKQTMQWATMLENFNQSLKELGDVENWART
IETDITTIASALEYAYKGDGPTDESIQ
Run BLAST on NCBI

transcript from alignment at sc0000134:400484..403131+

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00011961 ID=TCONS_00011961|Name=TCONS_00011961|organism=Clytia hemisphaerica|type=transcript|length=2648bp|location=Sequence derived from alignment at sc0000134:400484..403131+ (Clytia hemisphaerica)
tccagatctaaagatataaaaaatacattttccaGATAGACACtatgaaa
aattaaatcaagCTATCAAAAAGGATCAAAGATGTTATCACGAGCACTGA
AGGAACACACTTCAAATCAAACTGTCATCAAGGAACAACAAGGTCTAtat
tttacacctttttcttttataagaacatccaaaagtttttgaagcctccg
gatgttcttaactttttgagtttcaaactatcattttgtgagtatttttg
tccattttgtgttttggagttcacaaagccttaaaacgttcttaacttgt
ttttaatattttgccattgaagccttatctTCTTACAGACAAACTTTATA
AAAAACGAGATTCGACGTCATCCATCCTTGGTAAACTCTATCCCAATCAC
TTTCCATAAAGCTTTTAACGAAAGAGGGGTCAATGGATATGTTTATTACA
ACAATTTCATTgatgttttcttttccttttcagaGGAACGCAAGAAAGTA
GCCCTGAAAGCTGTCAAGGATTTTTCTGGAAGACTTGTTGATTTACTGAA
TGCCGAGTAAGCCATACAGTGAAGTGGACAAATTTCCTTTGCCTTTTTTG
TTCTGACAACATATTATactgacaaaagattttttgaattaaaagaatgg
tattataaaaaagagCTGTGTGGTGCATGTTGACAAAGCAGatcaacaaa
agaatttctaaaaatttgtgCTCGTGCGGAGAGAGAAATAgttgggagtt
tctaaacatcgaccagaaatggcgaccacgaccagcgaccacgaccggcg
accagataaatttgggttatcgagtttacctgctctctccaccTTNNCGC
tctattcaagctccaagagcgttgaaatggctgctctacacgttttgcac
gtggctttataatcactgtaggtgagacaggggtgagctttactcttcaa
ttcgataaataaatgatcataatagagaaagactctacggtggagaaaga
ggaaaaactcgataacccaaatttatctggtcgccggtcgtggtcgctgg
tcgtggtcgccatttctggtcgatgtttagaaactcccgaaatagttgtt
ctttcttttgtttaaaaatactgTGTTTAATTATGTCTTTTTAAGTGGCT
TTTTCGGTGATggtatttcaaatttcttactttttcttttttttaaaaag
catccATCTTTTAattctcttcttttgttttcattttcttgaatttcagc
GTGGAGAAAGCATACAACAATCAGCGTGCTCTTGAAAACGAGGCTAAGAT
TCTACAACAACACGTCAATCAATTGTCAAAACAAACAATGCAATGGGCTA
CCATGTTGgaaaatttcaaccaatcacTGAAGGAGTTAGGTGATGTAGAG
AACTGGGCACGAACCATTGAAACAGACATTACAACAATAGCATCAGCATT
GGAATATGCATACAAAGGTGACTTCTTAGGACTAATTATGACCCTTGCAC
AGAACACGAGCGACTTTTATgtattcgtgatattcatgatgcaatctttc
cGCCTAAATATAATATGATCGAATATCTTTCGGGAATCTATTGTAGATAA
TCAAAGAATTTCAAtgtaagagttttttttcgtTTCGGAGTATGTACTtc
tgtaattaattttttcttattttttctggGGGTCCTTGCTTGGAAAACAT
TGGGGAACGCAAATGTTTTGCCACCGAATGGCGGAGAAATGTTTTGATTC
GGAGTGTCAATCAatgaaaagattacatcatgaatatcaagaattacCCT
TTTCAGGAAGGGTGAGCGTGAGATTGTTGATTAACCTGTAGTCCTCAGTC
GGTCAGGATCTGAAACATTGAAAAACTAATAGTCTCCGCCAGAAAACTCA
ACATACATTAACTTgcaatttattcaaaaatttacttttttaggGGATGG
GCCAACGGACGAGTCAATACAATAATCGGCATAATGGAGTTGTATGCATT
GCTGTATAATTAGAAATAAGGAGGAATGCTTATACATGGAGAAAGGCTGG
CATTCCTAATATGACAAAGAGTTTAATGCTCAACCATAATAATAATTCCA
TCATAAACGTTATTAGTTGCATTTATTAGGCATAACAAGAGACTCGAACC
TCAATGTTTTTCATCGAAATTTTAGTGGGACAATTCTTGATGTATTGAAT
TCGTATAATATCATTGTCCTTGAATAGTAAAGATTTTTGGACaatatcaa
ataatttttttgctttttaatttGAATCCTGGATAATGGTTGAAGAAATT
CTTTCCTGACGTACTGATTCTCTTTTTTTGATTGATCTGAAATTGTCTAC
CTCTGAATAAATGTTCAGTTGAAAGCCTTGAATATCTATATATTTAAAGT
GTCCCAAAAATCTGTCATTTGTCAAAATCTTTATAACATGATTGAAAACT
TCAATCCTATTGCCATagggaatttaatttattcAGTTAGATTTCAATAG
ACACGTAGGATTTTTGGACATATTATCGGCGCTGCATTCAAAATtagtag
aaaattaaaaaacaagttttgtaaataaaagtaatTTGAATTCTAAATAA
TGAATAACAATAATGaataacaatttttgaaaagaaaatgcaCAAttg

Coding sequence (CDS) from alignment at sc0000134:400484..403131+

>TCONS_00011961 ID=TCONS_00011961|Name=TCONS_00011961|organism=Clytia hemisphaerica|type=CDS|length=1536bp|location=Sequence derived from alignment at sc0000134:400484..403131+ (Clytia hemisphaerica)
ATGTTATCACGAGCACTGAAGGAACACACTTCAAATCAAACTGTCATCAA
GGAACAACAAGaGGAACGCAAGAAAGTAGCCCTGAAAGCTGTCAAGGATT
TTTCTGGAAGACTTGTTGATTTACTGAATGCCGAcGTGGAGAAAGCATAC
AACAATCAGCGTGCTCTTGAAAACGAGGCTAAGATTCTACAACAACACGT
CAATCAATTGTCAAAACAAACAATGCAATGGGCTACCATGTTGgaaaatt
tcaaccaatcacTGAAGGAGTTAGGTGATGTAGAGAACTGGGCACGAACC
ATTGAAACAGACATTACAACAATAGCATCAGCATTGGAATATGCATACAA
AGgGGATGGGCCAACGGACGAGTCAATACAATAAATGTTATCACGAGCAC
TGAAGGAACACACTTCAAATCAAACTGTCATCAAGGAACAACAAGaGGAA
CGCAAGAAAGTAGCCCTGAAAGCTGTCAAGGATTTTTCTGGAAGACTTGT
TGATTTACTGAATGCCGAcGTGGAGAAAGCATACAACAATCAGCGTGCTC
TTGAAAACGAGGCTAAGATTCTACAACAACACGTCAATCAATTGTCAAAA
CAAACAATGCAATGGGCTACCATGTTGgaaaatttcaaccaatcacTGAA
GGAGTTAGGTGATGTAGAGAACTGGGCACGAACCATTGAAACAGACATTA
CAACAATAGCATCAGCATTGGAATATGCATACAAAGgGGATGGGCCAACG
GACGAGTCAATACAATAAATGTTATCACGAGCACTGAAGGAACACACTTC
AAATCAAACTGTCATCAAGGAACAACAAGaGGAACGCAAGAAAGTAGCCC
TGAAAGCTGTCAAGGATTTTTCTGGAAGACTTGTTGATTTACTGAATGCC
GAcGTGGAGAAAGCATACAACAATCAGCGTGCTCTTGAAAACGAGGCTAA
GATTCTACAACAACACGTCAATCAATTGTCAAAACAAACAATGCAATGGG
CTACCATGTTGgaaaatttcaaccaatcacTGAAGGAGTTAGGTGATGTA
GAGAACTGGGCACGAACCATTGAAACAGACATTACAACAATAGCATCAGC
ATTGGAATATGCATACAAAGgGGATGGGCCAACGGACGAGTCAATACAAT
AAATGTTATCACGAGCACTGAAGGAACACACTTCAAATCAAACTGTCATC
AAGGAACAACAAGaGGAACGCAAGAAAGTAGCCCTGAAAGCTGTCAAGGA
TTTTTCTGGAAGACTTGTTGATTTACTGAATGCCGAcGTGGAGAAAGCAT
ACAACAATCAGCGTGCTCTTGAAAACGAGGCTAAGATTCTACAACAACAC
GTCAATCAATTGTCAAAACAAACAATGCAATGGGCTACCATGTTGgaaaa
tttcaaccaatcacTGAAGGAGTTAGGTGATGTAGAGAACTGGGCACGAA
CCATTGAAACAGACATTACAACAATAGCATCAGCATTGGAATATGCATAC
AAAGgGGATGGGCCAACGGACGAGTCAATACAATAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_006711XLOC_006711Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00011961-exon-sc0000134-1491911889:400484..400625TCONS_00011961-exon-sc0000134-1491911889:400484..400625Clytia hemisphaericaexon
TCONS_00011961-exon-sc0000134-1510915933:400484..400625TCONS_00011961-exon-sc0000134-1510915933:400484..400625Clytia hemisphaericaexon
TCONS_00011961-exon-sc0000134-1575043694:400484..400625TCONS_00011961-exon-sc0000134-1575043694:400484..400625Clytia hemisphaericaexon
TCONS_00011961-exon-sc0000134-1491911889:400967..401039TCONS_00011961-exon-sc0000134-1491911889:400967..401039Clytia hemisphaericaexon
TCONS_00011961-exon-sc0000134-1510915933:400967..401039TCONS_00011961-exon-sc0000134-1510915933:400967..401039Clytia hemisphaericaexon
TCONS_00011961-exon-sc0000134-1575043694:400967..401039TCONS_00011961-exon-sc0000134-1575043694:400967..401039Clytia hemisphaericaexon
TCONS_00011961-exon-sc0000134-1491911889:401733..401950TCONS_00011961-exon-sc0000134-1491911889:401733..401950Clytia hemisphaericaexon
TCONS_00011961-exon-sc0000134-1510915933:401733..401950TCONS_00011961-exon-sc0000134-1510915933:401733..401950Clytia hemisphaericaexon
TCONS_00011961-exon-sc0000134-1575043694:401733..401950TCONS_00011961-exon-sc0000134-1575043694:401733..401950Clytia hemisphaericaexon
TCONS_00011961-exon-sc0000134-1491911889:402427..403131TCONS_00011961-exon-sc0000134-1491911889:402427..403131Clytia hemisphaericaexon
TCONS_00011961-exon-sc0000134-1510915933:402427..403131TCONS_00011961-exon-sc0000134-1510915933:402427..403131Clytia hemisphaericaexon
TCONS_00011961-exon-sc0000134-1575043694:402427..403131TCONS_00011961-exon-sc0000134-1575043694:402427..403131Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00011961-proteinTCONS_00011961-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000134supercontigsc0000134:400484..403131 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
87.9879	88.5206	112.985	109.143	25.2866	18.1505	37.3637	41.3686	63.8798	44.6451	52.1938	53.2075	40.7899	39.2219	40.3559	40.1199	46.6149	44.7522	51.3945	49.1502	36.7019	32.58	48.0781	44.6654	34.6877	31.0311	29.7956	20.957	42.387	35.8441
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR009395BLOC1S1
Vocabulary: Cellular Component
TermDefinition
GO:0031083BLOC-1 complex
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
cellular_component GO:0031083 BLOC-1 complex
Blast
[Close]
BLAST of TCONS_00011961 vs. Swiss-Prot (Human)
Match: BL1S1 (Biogenesis of lysosome-related organelles complex 1 subunit 1 OS=Homo sapiens GN=BLOC1S1 PE=1 SV=2)

HSP 1 Score: 137.117 bits (344), Expect = 3.073e-38
Identity = 70/126 (55.56%), Postives = 86/126 (68.25%), Query Frame = 1 
Query:   58 SSYQKGSKMLSRALKEHTSNQTVIKEQQEERKKVALKAVKDFSGRLVDLLNADVEKAYNNQRALENEAKILQQHVNQLSKQTMQWATMLENFNQSLKELGDVENWARTIETDITTIASALEYAYKG 435
             S Q    MLSR LKEH + Q   KE QE+R++ A+ A    +  LVD LN  V +AY NQR L++E K LQ    Q +KQT QW  M+ENFNQ+LKE+GDVENWAR+IE D+ TIA+ALEY YKG
Sbjct:   21 PSPQPDVTMLSRLLKEHQAKQNERKELQEKRRREAITAATCLTEALVDHLNVGVAQAYMNQRKLDHEVKTLQVQAAQFAKQTGQWIGMVENFNQALKEIGDVENWARSIELDMRTIATALEYVYKG 146
The following BLAST results are available for this feature:
BLAST of TCONS_00011961 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
BL1S13.073e-3855.56Biogenesis of lysosome-related organelles complex ... [more]
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