TCONS_00011977 (transcript) - C. hemisphaerica

Overview
NameTCONS_00011977
Unique NameTCONS_00011977
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1288

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00011977 ID=TCONS_00011977|Name=TCONS_00011977|organism=Clytia hemisphaerica|type=transcript|length=1288bp
TTTAGTTTGACAATCTTAAaagaaaattgtacaaaaaacaaaatgttgac
aaaatttaaatttcttgcATATGATTTGGCATTCTTGAATTTATCACTGA
GATGTTTCTGCTCAAAGTCAACCCAAAGAACACTCCCTGTAATATTTAGA
GGAATGAACTACCCTAAATGTAGTTTTTCAACCACTGTTACAAAACAATC
AAATTCCTTTTCAAAGGAGGAACTTAAGAAACGATTGACTAGGATGCAAT
ATGAAGTCACACAGAATGCAGGAACGGAGAGAGCATTTACAGGAGAATAT
TGGGATAACCACAGAAAAGGGATTTACAAATGTGTTGTTTGTGATGAGGA
CTTGTTTTTGTCAAGTACAAAATATGAAAGTGGTAGTGGATGGCCCTCCT
TTTTTGACGTAATTGATAAGTCCAAAGTAAAATTGATTGTAGATCGTTCA
TATGGAATGGTTCGAACAGAAGTAGTTTGCAATAAATGTAAATCCCACCT
TGGTCATTTGTTTGAGGATGGACCAAGGCCTACAGGACAACGTTACTATC
TTTATCTCATTAAAAAGAATGttaagaaatatttcaaaaagatgtttCAA
TGATCTACAAACAGTCTGCATTTTTGGACGTAGATGTGTTGCAAGTGGTC
CTATAGATTTTCCAGATATGGGCCCACCCATTCCAGAATATAAAAAGAAA
GCTGGTGAGGACACTGAAGTCAAACGTTCTCGATTATTATATCAAAGTCG
TAAAAGAGGTATGTCAGAAAATGGACTTTTATTGAGTAATTTTGCATCTA
GatatttgaaaacatttgatAGCCAGCAACTGGATGaatttgataatttg
ataaataAACCATCAAATGATTGGGATTTGTTTTACTGGATGCTAGAGAA
GGATGTAACTCCAAAAGAATACGATACACCTATTATGGACATGTTGAAAA
AATACTGTAAAAATGAAGAGATGGAAGCTCGATATCAACAACCAGATTTG
GATCCAATTATAAAATAAGAATTTGTTATTTTGGTTTTGAATTTCATGTT
TGTGCTTTGGAATTTTTAGACCTTTAGAGTTCAAATTAATGGCAGCagaa
actttcaatttcaatttatacTTGGAAGACTCTAACTTGATACTGTTTTC
ATTGGAGTGTCTTAAAATctgaattattattttatttaagcAAATTTGTA
AATGAACTGAAGAAAATAGCTATTAACCTTGTTAACTTAATCATATGAGA
CGATAATTATTTTGTCCACTTGAATAATTGAACAATGA
Run BLAST on NCBI

protein sequence of TCONS_00011977-protein

>TCONS_00011977-protein ID=TCONS_00011977-protein|Name=TCONS_00011977-protein|organism=Clytia hemisphaerica|type=polypeptide|length=200bp
FSLTILKENCTKNKMLTKFKFLAYDLAFLNLSLRCFCSKSTQRTLPVIFR
GMNYPKCSFSTTVTKQSNSFSKEELKKRLTRMQYEVTQNAGTERAFTGEY
WDNHRKGIYKCVVCDEDLFLSSTKYESGSGWPSFFDVIDKSKVKLIVDRS
YGMVRTEVVCNKCKSHLGHLFEDGPRPTGQRYYLYLIKKNVKKYFKKMFQ
Run BLAST on NCBI

transcript from alignment at sc0000134:243696..245699-

Legend: exonCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00011977 ID=TCONS_00011977|Name=TCONS_00011977|organism=Clytia hemisphaerica|type=transcript|length=2004bp|location=Sequence derived from alignment at sc0000134:243696..245699- (Clytia hemisphaerica)
TTTAGTTTGACAATCTTAAAAGAAAATTGTACAAAAAACAAAATGTTGAC
AAAATTTAAATTTCTTGCATATGATTTGGCATTCTTGAATTTATCACTGA
GATGTTTCTGCTCAAAGTCAACCCAAAGAACACTCCCTGTAATATTTAGA
GGAATGAACTACCCTAAATGTAGTTTTTCAACCACTGTTACAAAACAATC
AAATTCCTTTTCAAAGGAGGAACTTAAGAAACGATTGACTAGGATGCAAT
ATGAAGTCACACAGAATGCAGGAACGGAGAGAGCATTTACAGGAGAATAT
TGGGATAACCACAGAAAAGGGATTTACAAATGTGTTGTTTGTGATGAGGA
CTTGTTTTTGTCAAGTACAAAATATGAAAGTGGTAGTGGATGGCCCTCCT
TTTTTGACGTAATTGATAAGTCCAAAGTAAAATTGATTGTAGATCGTTCA
TATGGAATGGTTCGAACAGAAGTAGTTTGCAATAAATGTAAATCCCACCT
TGGTCATTTGTTTGAGGATGGACCAAGGCCTACAGGACAACGTTACTGTA
TGAATTCTGCTTCTTTAAACTTTATCAAGGACGAAAAGTGAATAGATTTT
GCTTAAGGAATAATTAAAACACAATTAGCAAAATTTCAAAAATTTTATGA
AAAAGATTACTCTTTTGTATATTATTATATATTTAATTTATAATATTAAG
TTACATTTGAAATTTTTTCTTGGTTTCCAAGGTATATTTTTAACACAACA
TTCATCTAGATGTTAAAATTAGGTCTGCATCTAGCCAGAACAATTTTTTA
CTAGATTTGAATGAATTTGTAGTCAATTTCATAAGCAAAGAATTGATACT
TTAATCGGATTAATTTTCACGAGATTAAATTTCGCGATTTCGCGAATTTT
TGCTATTTTCGCGAAATTAAAACTCGTGAACAGGCCTGAGATTCCTGATT
CGCGAAATTAAATCCACCACAAAATTTTTAAAATTGTACTTTTGGCGGAG
AAACTAGTTCCAAGTCTCCATTTATGGCAAAAAATGGCTATTTTCAGTTG
TTTTCTGGCTTATTCGTGAAATTAAATCCACGCAAAATATTTCAAAACTC
TGACTCGCGAAATTTTGATTTTTTTAGCTCGCGAAATTTAATCTCGCGAA
ATTTAATCTGGTTAAAGTATTTTATCTATGAAAAGTTTACATGAAATTAA
ATGATTGATTTATTTAAAGGTTAACTGAAATCTTATTTGATTAAATATTT
TCTTTTCCTTCAGATCTTTATCTCATTAAAAAGAATGTTAAGAAATATTT
CAAAAAGATGTTTCAATGATCTACAAACAGTCTGCATTTTTGGACGTAGA
TGTGTTGCAAGTGGTCCTATAGATTTTCCAGATATGGGCCCACCCATTCC
AGAATATAAAAAGAAAGCTGGTGAGGACACTGAAGTCAAACGTTCTCGAT
TATTATATCAAAGTCGTAAAAGAGGTATGTCAGAAAATGGACTTTTATTG
AGTAATTTTGCATCTAGATATTTGAAAACATTTGATAGCCAGCAACTGGA
TGAATTTGATAATTTGATAAATAAACCATCAAATGATTGGGATTTGTTTT
ACTGGATGCTAGAGAAGGATGTAACTCCAAAAGAATACGATACACCTATT
ATGGACATGTTGAAAAAATACTGTAAAAATGAAGAGATGGAAGCTCGATA
TCAACAACCAGATTTGGATCCAATTATAAAATAAGAATTTGTTATTTTGG
TTTTGAATTTCATGTTTGTGCTTTGGAATTTTTAGACCTTTAGAGTTCAA
ATTAATGGCAGCAGAAACTTTCAATTTCAATTTATACTTGGAAGACTCTA
ACTTGATACTGTTTTCATTGGAGTGTCTTAAAATCTGAATTATTATTTTA
TTTAAGCAAATTTGTAAATGAACTGAAGAAAATAGCTATTAACCTTGTTA
ACTTAATCATATGAGACGATAATTATTTTGTCCACTTGAATAATTGAACA
ATGA

Coding sequence (CDS) from alignment at sc0000134:243696..245699-

>TCONS_00011977 ID=TCONS_00011977|Name=TCONS_00011977|organism=Clytia hemisphaerica|type=CDS|length=1206bp|location=Sequence derived from alignment at sc0000134:243696..245699- (Clytia hemisphaerica)
ATCTTTATCTCATTAAAAAGAATGTTAAGAAATATTTCAAAAAGATGTTT
CAATGATTTAGTTTGACAATCTTAAAAGAAAATTGTACAAAAAACAAAAT
GTTGACAAAATTTAAATTTCTTGCATATGATTTGGCATTCTTGAATTTAT
CACTGAGATGTTTCTGCTCAAAGTCAACCCAAAGAACACTCCCTGTAATA
TTTAGAGGAATGAACTACCCTAAATGTAGTTTTTCAACCACTGTTACAAA
ACAATCAAATTCCTTTTCAAAGGAGGAACTTAAGAAACGATTGACTAGGA
TGCAATATGAAGTCACACAGAATGCAGGAACGGAGAGAGCATTTACAGGA
GAATATTGGGATAACCACAGAAAAGGGATTTACAAATGTGTTGTTTGTGA
TGAGGACTTGTTTTTGTCAAGTACAAAATATGAAAGTGGTAGTGGATGGC
CCTCCTTTTTTGACGTAATTGATAAGTCCAAAGTAAAATTGATTGTAGAT
CGTTCATATGGAATGGTTCGAACAGAAGTAGTTTGCAATAAATGTAAATC
CCACCTTGGTCATTTGTTTGAGGATGGACCAAGGCCTACAGGACAACGTT
ACTATCTTTATCTCATTAAAAAGAATGTTAAGAAATATTTCAAAAAGATG
TTTCAATGATTTAGTTTGACAATCTTAAAAGAAAATTGTACAAAAAACAA
AATGTTGACAAAATTTAAATTTCTTGCATATGATTTGGCATTCTTGAATT
TATCACTGAGATGTTTCTGCTCAAAGTCAACCCAAAGAACACTCCCTGTA
ATATTTAGAGGAATGAACTACCCTAAATGTAGTTTTTCAACCACTGTTAC
AAAACAATCAAATTCCTTTTCAAAGGAGGAACTTAAGAAACGATTGACTA
GGATGCAATATGAAGTCACACAGAATGCAGGAACGGAGAGAGCATTTACA
GGAGAATATTGGGATAACCACAGAAAAGGGATTTACAAATGTGTTGTTTG
TGATGAGGACTTGTTTTTGTCAAGTACAAAATATGAAAGTGGTAGTGGAT
GGCCCTCCTTTTTTGACGTAATTGATAAGTCCAAAGTAAAATTGATTGTA
GATCGTTCATATGGAATGGTTCGAACAGAAGTAGTTTGCAATAAATGTAA
ATCCCACCTTGGTCATTTGTTTGAGGATGGACCAAGGCCTACAGGACAAC
GTTACT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_006719XLOC_006719Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00011977-proteinTCONS_00011977-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00011977-exon-sc0000134-1575043694:245153..245699TCONS_00011977-exon-sc0000134-1575043694:245153..245699Clytia hemisphaericaexon
TCONS_00011977-exon-sc0000134-1575043694:243696..244436TCONS_00011977-exon-sc0000134-1575043694:243696..244436Clytia hemisphaericaexon
TCONS_00011977-exon-sc0000134-1510915933:245153..245699TCONS_00011977-exon-sc0000134-1510915933:245153..245699Clytia hemisphaericaexon
TCONS_00011977-exon-sc0000134-1510915933:243696..244436TCONS_00011977-exon-sc0000134-1510915933:243696..244436Clytia hemisphaericaexon
TCONS_00011977-exon-sc0000134-1491911889:245153..245699TCONS_00011977-exon-sc0000134-1491911889:245153..245699Clytia hemisphaericaexon
TCONS_00011977-exon-sc0000134-1491911889:243696..244436TCONS_00011977-exon-sc0000134-1491911889:243696..244436Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000134supercontigsc0000134:243696..245699 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
82.5736	74.0758	34.0571	27.3897	9.05959	6.83016	8.84621	9.37737	10.3783	9.19821	14.4329	9.36839	10.0822	7.94208	7.32045	11.7652	12.8655	13.3215	3.48054	6.84974	29.0573	26.9288	66.3023	58.487	8.33395	12.1997	21.5105	17.2269	34.175	32.4076
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR002579Met_Sox_Rdtase_MsrB
IPR011057Mss4-like
Vocabulary: Biological Process
TermDefinition
GO:0055114oxidation-reduction process
Vocabulary: Molecular Function
TermDefinition
GO:0033743peptide-methionine (R)-S-oxide reductase activity
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0055114 oxidation-reduction process
molecular_function GO:0033743 peptide-methionine (R)-S-oxide reductase activity
Blast
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BLAST of TCONS_00011977 vs. Swiss-Prot (Human)
Match: MSRB3 (Methionine-R-sulfoxide reductase B3 OS=Homo sapiens GN=MSRB3 PE=1 SV=2)

HSP 1 Score: 152.14 bits (383), Expect = 4.214e-43
Identity = 68/113 (60.18%), Postives = 83/113 (73.45%), Query Frame = 1 
Query:  208 FSKEELKKRLTRMQYEVTQNAGTERAFTGEYWDNHRKGIYKCVVCDEDLFLSSTKYESGSGWPSFFDVIDKSKVKLIVDRSYGMVRTEVVCNKCKSHLGHLFEDGPRPTGQRY 546
            FS++EL+KRLT +QY VTQ  GTE AF GEY  +   GIYKCVVC   LF S TK++SGSGWPSF DVI+   +    D SYGM R E  C++C +HLGH+F+DGPRPTG+RY
Sbjct:   45 FSQQELRKRLTPLQYHVTQEKGTESAFEGEYTHHKDPGIYKCVVCGTPLFKSETKFDSGSGWPSFHDVINSEAITFTDDFSYGMHRVETSCSQCGAHLGHIFDDGPRPTGKRY 157
The following BLAST results are available for this feature:
BLAST of TCONS_00011977 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
MSRB34.214e-4360.18Methionine-R-sulfoxide reductase B3 OS=Homo sapien... [more]
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