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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00011982 ID=TCONS_00011982|Name=TCONS_00011982|organism=Clytia hemisphaerica|type=transcript|length=2071bp
TGagctttcaagaaagtcatgCGGATTCTTGGAAGGCCTGGTAATCGAAT
GTTATGATCACGTGACCCACGCTCAAAGCAGGCGTCGAACGTACTCCGTT
GCTGGAACGACGGACTGATTCAGAATCCCTATCACTTTGAAGCGATACGG
AAAgcttattggttgaaagtgacctCAATCAAAAATTAGCCAATAGAAAG
GCTTTAATTAATGTCAGTACGGTATGCTCTGAGACAAAGTGAAGAGGAAG
TTGATACGTTGCTGATtgctgataatttttttttcattctgacGACGCAT
ACTACCAATACTCAGTCAACTCAACCCCATTTACCCCAACTTTGCTGAAG
CTGGGAACACACATTGTATTTATTAAACCACGTTTAAACTTTTTGGATTT
ACATTGAAATTAGAAGCTGATTAATATGGCAAGAATCCGTGTTTATAGCC
CTTCTGGGCAGACTGTGAAGAACCAAAAACAAATGCAACTTGACATGGAG
AATGAACTTACTTTTGCCAACTCAGTTTATGAAAAATCATCTTTCCTTCT
GGACCAAGAATCCAAGTATTGTCTTTGACCAGGGTGCTTCAACTGTCTGG
GGACAGGATTCAATCAGAGAAGAGAAGGCATCATTTGACGAACAGTTCTA
TGCAAGTTCGACTTTATTCGATACAGAATTCGATTTCATTCCATCTTCGT
TAGATGATCCTTTTCTTTATAATTTGACCAATCCATTTAAAGACTGTGAA
ATGATGTCTTCCCCAGATCGTACGAGAAAATGTTCCATTTCTGATATTAT
TGATGTAATTAacgaagaaaaattattaattaAAAATTGTGGTTCTCTGA
ACAACAAGGATGAAGGTTATGATTCAAATCTCTCCATTGGAAGTCTCTCC
TCTGAAGAAATTGGCCAAGATGAATTTGAGGGGAAATTCACTACTGAAGA
AAATTCGAGTGATGATGAGTGCTTTATTAATGTTGAAGATGAGTTACCAG
TTATTCAAGATCAAACCACTAAAGCGGATCTACAACCACAATCCAAGGTT
ATTGGAAATCTAGTTTCATCAACTGGGTTACCGAAATTATTATCGGGTTC
TAATAGTAGTGCTATTATTGTTTTATGGAACactgaaaataaaattcaaa
ttgtttGTACTTCGAAGAAGAAGTTGCATGAGATTCTACAAAATCAAAAT
GACTTGCCGTCTAGTTGCAATACAACTAATAATGCTCCTACCAATACAAA
ATCACTTGACCCTACTCCTACCAATATAAAGTCACTCGACCTAGCATCTA
CTATAGAGTCTAAAGATTCAGGCTCAGAGACAGAAAAAGTCGAGAATGAT
CAAGCTAAAAGAAGAGGTAGAAAACGAATTTACCATTCGAACACAGAAAC
AGAGCGTGAAGACTCGAAACGTGTACGTAACAATGAAGCTTGTCGTAAAT
TTCGTAAAAGTCGTACCGAAAAACGTAAATCGTTATTCCAAAGCGAATCA
ACTTTGCTACAACGTAACTTAAATTTGAAAGAACAGGTAGCTGCCCTTGA
AAGACAATTATTATATATCAAAGAAAAGTTGGGTATGTCTAAAAACATAT
CTAACAATTAAAAGATTCCAAAGTTGAAAAGACTTCTTTTTTGACGAAAA
GGGATGGTTTTTTCCTCTTTCACacttcctaatttttttttttgaaataa
atagtttaaagaaaaatttattgttttccGATAAAAGATATATTGACCGT
GTAAGTAAGCACTTTATTTTAATGATGATTTTTGGAAAAGTATATTTTAC
AACGTAATAAATAACCTTATTAAAAGACAACGACAAGACGCCGAGGGTAA
TATTTTTTGTAAGCCGAATTATTTGACTTATTCGACTTTTTCATCGTTGT
AATCATACTATGCTACTAATAAGGAAAAAGCTCTCATACAAGTGCACCCT
CTATTTCTggtattttaaaaggaaaacgAACGCCATATAGCTCccgtatt
ttttaaggaaaatgatAACTCtgtatttcttgtatttttgaaggaaaacg
aTAAGTCTGCATTTCTTGTAT Run BLAST on NCBI protein sequence of TCONS_00011982-protein >TCONS_00011982-protein ID=TCONS_00011982-protein|Name=TCONS_00011982-protein|organism=Clytia hemisphaerica|type=polypeptide|length=369bp
MNLLLPTQFMKNHLSFWTKNPSIVFDQGASTVWGQDSIREEKASFDEQFY
ASSTLFDTEFDFIPSSLDDPFLYNLTNPFKDCEMMSSPDRTRKCSISDII
DVINEEKLLIKNCGSLNNKDEGYDSNLSIGSLSSEEIGQDEFEGKFTTEE
NSSDDECFINVEDELPVIQDQTTKADLQPQSKVIGNLVSSTGLPKLLSGS
NSSAIIVLWNTENKIQIVCTSKKKLHEILQNQNDLPSSCNTTNNAPTNTK
SLDPTPTNIKSLDLASTIESKDSGSETEKVENDQAKRRGRKRIYHSNTET
EREDSKRVRNNEACRKFRKSRTEKRKSLFQSESTLLQRNLNLKEQVAALE
RQLLYIKEKLGMSKNISNN Run BLAST on NCBI transcript from alignment at sc0000134:320514..325331- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00011982 ID=TCONS_00011982|Name=TCONS_00011982|organism=Clytia hemisphaerica|type=transcript|length=4818bp|location=Sequence derived from alignment at sc0000134:320514..325331- (Clytia hemisphaerica)
TGAGCTTTCAAGAAAGTCATGCGGATTCTTGGAAGGCCTGGTAATCGAAT
GTTATGATCACGTGACCCACGCTCAAAGCAGGCGTCGAACGTACTCCGTT
GCTGGAACGACGGACTGATTCAGAATCCCTATCACTTTGAAGCGATACGG
AAAGCTTATTGGTTGAAAGTGACCTCAATCAAAAATTAGCCAATAGAAAG
GCTTTAATTAATGTCAGTACGGTATGCTCTGAGACAAAGTGAAGAGGAAG
TTGATACGTTGCTGATTGCTGATAATTTTTTTTTCATTCTGACGACGCAT
ACTACCAATACTCAGTCAACTCAACCCCATTTACCCCAACTTTGCTGAAG
CTGGGAACACACATTGTATTTATTAAACCACGTTTAAACTTTTTGGATTT
ACATTGAAATTAGAAGCTGATTAATATGGCAAGAATCCGTGTTTATAGCC
CTTCTGGGCAGACTGTGAAGAACCAAAAACAAATGCAACTTGACATGGAG
AATGAACTTACTTTTGCCAACTCAGTTTATGAAAAATCATCTTTCCTTCT
GGACCAAGAATCCAAGTATTGTCTTTGACCAGGGTGAGTTAATTTTTCTA
GAAAGTAAAATTTTGCGATAAAGGGGCTGGAAATTGACTGCCGTGAGATC
GGGTAACTTGCATCAGGTGGAGGCAAACGGTAACTTGCATCAGGTGGAGG
CAAACATGCATAGCCCTCAAATGAATGACAGTCTGGGAAATCCTCTCAAT
TGCACGCTTATGTTCCGAGGGCGTAAGCGTGCAATTGCATGGTTATAATT
TACACCCGCTCCCGCCCCGGTTGAAATTGCTTAGGGATTTCAAAGGGGTT
CAGAATTCTCTAATTCGGGCGAAGGCATGGTTTAACGGGCAATCCATTTT
TACGGAATCTTCTTCTACGATAAATTTTGAGTAAAACTGCCTTAGGCTTT
TTTTTAAAATTCAACAGAGCTTTCGGAAGGAATTGCGTGTCAAAAATATA
GGAAATTTTAAAGCGTGCAATTGCACGTTTACCGCCAAAGCCGTCACCCG
GCCGTCCCCCGACAATCTTGCTTAACGCTTACCCCCTGTTTTAGAACAAT
TTCAATAAGCGTGTAATTACACGCTTAAAAATTCTGCCATTTTGATAACC
GTGCAATTGCGGGCTTACGGCCTCGGAACATAAGCGTGCAATTGAGAGGA
TTTCCCAGACTGAATGACCTGTCTGGTCATTAAAATACAACTACGCAGCT
CCGCTTGCAGCTCTACTCTACCATTTTTGTTTTGATTTAACTTTGTATTT
TAATGACCAGCCAAGTCTTTCATTTGAGGACTATGCATGTTAGCCTCCAC
TGATGCAAGTTACCCGATCTCTCGGTACGTACTTTAGGCCTGTTTAGGCG
TACAAACTTTCGCGAGCAGAAACTTTCGTGATTTTTGCGAATTTTGGCCC
TTTTTGTGAAAATAAATGTCTTTAAAAATCCTAGGAAGGGCCATTCGTGA
AAGTTTAGCTATGGTCGCGAAAATTCTTGACAAAATAGAAAATCTGTAAA
ACTTCAAACTTTGAATAAAATGTAACTTTTATGGCACTTTTTAGCTTGCT
AAAAGACTAATAAGTCAAAGGACAAATGTTTCAAGCCAATCCAAGAAGTA
TTTGCATAGCTGTCAACTTCGCCTCGCATAAATGCGGGAGAGCTTCAAGT
CGGAAAAATTTTCCGCGATAATCCAATTTTTCCGAATAGGAAAATCAGGA
AATCGAGGGAATTTCCCCGCGAAGTCTGATTTTATCAGAAATTTCTTTCG
GGAAATCGGGGAATTTTCATCTCAATTTTCCAAATTCATGAAACTTTGCC
ATGCCGCTTTCGAAATCTGAATTTTTTTTCAGGAAGTCGGAAAATTTTTG
GAAATGCGGGAGATACAGGAGAAAATCCTGAAAATGCGAGAGATTTGGCT
GAATTTTTTTCCCGCTGGAGAAAAGGTTGGCATGCGGGAGTCTCCCGTCC
AATGCGGGAGAGTTGACAGCTATGTATTTGTCCCTCTAAGCCATTTTTTC
ATGTGAAAATTCTCAATTTTACATTTTGATTCGCAAAAGTTTATGCTCAC
GAAAAATATTTTTCCGTTAAATCCACAAAATCATACTTAATTCTTCTTCG
TTCCCGACTAAACATTTTTTTCATATTTCGATTTAAAAGCCTACTCGGTG
CGAAAGAGAAATCGTGTATTTTTTAATACGCCGTTCATTAAACTCAAATC
AAATGACTTTGGAGGTTCGGTAAAATGGTGGCCGAATTGTCGTCCCATGT
TTTGTCAGATAGTCCCAAGTTAGAGCAGTTTACGGTAAATGTTGTAAATT
TCGCGATTTTTTGTCCTCGCGAAAGTTTCTGCTTGCGAAAGTTTGTACCC
CCTAAAGTATATCGATGCCAGCTTGCAAGGAAAGAACCTCCTGGAAATTT
TCAATGACCCCTGGAGGGGGTCATGAGAATTTTAGTTGGAGAAAGGGAAT
CTTATGCAAAACGACGGTAGATTTTGAGATATATTGGATTTTGAAAAAAG
CCAAAATTCGGTTTTTCAATGCAGATTCTACAAAGTAATATTTTCAGATT
TTATGTATTTGAAGTTTGTGAACAAAGTTCTGATGTTCTAAAGAGTTTGA
ATAAAGTTAAAGAAAAAATTGGAAATGCTATTTCACAATTTGAGAAATTT
CATTTCCCTAACCCACGGAAATGACATTTCCCAATTCAGAAAGTAAAATT
CACATTTGCAGAATAAAATTTGCTTGATTGTTTTTATGCTGCCTAAGCAT
GTTATTTTCCAATGAGTTTATACTTGAATCTCCTACTGGATATACAGATT
CTAAAAGCTAAAAGGAGCTTTGTTAAATCGCAAATCCCAAACTTGTGTAA
TTTTGATTTCTCATTTCATTTCATAAGCTACAGAGTAATGATCCCAAAGT
TTGGATATTTTGTCACAAACTTGGGAATGGTATTTTTCCAAACCTTGTTG
TTTGCATTTTGCTTTTAAGTTCGTGAAATGCACTTTCCCATTGCGGTTTT
ATTTTGTCTGAGGCATATATAATTTAACTTAAATTTANAGTATTATAAAA
ATGATAGTATTTTATAGCGCTTTTGCGCGCCATAAATTTGAATCCCAAAT
GTGAAATGTAATATCTCAAACCTCTTAAATCTCAAAGTCAAAATCACAAA
GTTTGTTTGAAACTGAAATTAATTTTTTTTAATTTCCGTATGAATAAATT
GAAATTCCCAAGATTGGGAATCAATGTGTAAAATGTAAAATGTTTATATT
GTCTCAATATGTTCATTTTTTTCTCTCTAGGTGCTTCAACTGTCTGGGGA
CAGGATTCAATCAGAGAAGAGAAGGCATCATTTGACGAACAGTTCTATGC
AAGTTCGACTTTATTCGATACAGAATTCGATTTCATTCCATCTTCGTTAG
ATGATCCTTTTCTTTATAATTTGACCAATCCATTTAAAGACTGTGAAATG
ATGTCTTCCCCAGATCGTACGAGAAAATGTTCCATTTCTGATATTATTGA
TGTAATTAACGAAGAAAAATTATTAATTAAAAATTGTGGTTCTCTGAACA
ACAAGGATGAAGGTTATGATTCAAATCTCTCCATTGGAAGTCTCTCCTCT
GAAGAAATTGGCCAAGATGAATTTGAGGGGAAATTCACTACTGAAGAAAA
TTCGAGTGATGATGAGTGCTTTATTAATGTTGAAGATGAGTTACCAGTTA
TTCAAGATCAAACCACTAAAGCGGATCTACAACCACAATCCAAGGTTATT
GGAAATCTAGTTTCATCAACTGGGTTACCGAAATTATTATCGGGTTCTAA
TAGTAGTGCTATTATTGTTTTATGGAACACTGAAAATAAAATTCAAATTG
TTTGTACTTCGAAGAAGAAGTTGCATGAGATTCTACAAAATCAAAATGAC
TTGCCGTCTAGTTGCAATACAACTAATAATGCTCCTACCAATACAAAATC
ACTTGACCCTACTCCTACCAATATAAAGTCACTCGACCTAGCATCTACTA
TAGAGTCTAAAGATTCAGGCTCAGAGACAGAAAAAGTCGAGAATGATCAA
GCTAAAAGAAGAGGTAGAAAACGAATTTACCATTCGAACACAGAAACAGA
GCGTGAAGACTCGAAACGTGTACGTAACAATGAAGCTTGTCGTAAATTTC
GTAAAAGTCGTACCGAAAAACGTAAATCGTTATTCCAAAGCGAATCAACT
TTGCTACAACGTAACTTAAATTTGAAAGAACAGGTAGCTGCCCTTGAAAG
ACAATTATTATATATCAAAGAAAAGTTGGGTATGTCTAAAAACATATCTA
ACAATTAAAAGATTCCAAAGTTGAAAAGACTTCTTTTTTGACGAAAAGGG
ATGGTTTTTTCCTCTTTCACACTTCCTAATTTTTTTTTTTGAAATAAATA
GTTTAAAGAAAAATTTATTGTTTTCCGATAAAAGATATATTGACCGTGTA
AGTAAGCACTTTATTTTAATGATGATTTTTGGAAAAGTATATTTTACAAC
GTAATAAATAACCTTATTAAAAGACAACGACAAGACGCCGAGGGTAATAT
TTTTTGTAAGCCGAATTATTTGACTTATTCGACTTTTTCATCGTTGTAAT
CATACTATGCTACTAATAAGGAAAAAGCTCTCATACAAGTGCACCCTCTA
TTTCTGGTATTTTAAAAGGAAAACGAACGCCATATAGCTCCCGTATTTTT
TAAGGAAAATGATAACTCTGTATTTCTTGTATTTTTGAAGGAAAACGATA
AGTCTGCATTTCTTGTAT Coding sequence (CDS) from alignment at sc0000134:320514..325331- >TCONS_00011982 ID=TCONS_00011982|Name=TCONS_00011982|organism=Clytia hemisphaerica|type=CDS|length=2220bp|location=Sequence derived from alignment at sc0000134:320514..325331- (Clytia hemisphaerica)
GTGCTTCAACTGTCTGGGGACAGGATTCAATCAGAGAAGAGAAGGCATCA
TTTGACGAACAGTTCTATGCAAGTTCGACTTTATTCGATACAGAATTCGA
TTTCATTCCATCTTCGTTAGATGATCCTTTTCTTTATAATTTGACCAATC
CATTTAAAGACTGTGAAATGATGTCTTCCCCAGATCGTACGAGAAAATGT
TCCATTTCTGATATTATTGATGTAATTAACGAAGAAAAATTATTAATTAA
AAATTGTGGTTCTCTGAACAACAAGGATGAAGGTTATGATTCAAATCTCT
CCATTGGAAGTCTCTCCTCTGAAGAAATTGGCCAAGATGAATTTGAGGGG
AAATTCACTACTGAAGAAAATTCGAGTGATGATGAGTGCTTTATTAATGT
TGAAGATGAGTTACCAGTTATTCAAGATCAAACCACTAAAGCGGATCTAC
AACCACAATCCAAGGTTATTGGAAATCTAGTTTCATCAACTGGGTTACCG
AAATTATTATCGGGTTCTAATAGTAGTGCTATTATTGTTTTATGGAACAC
TGAAAATAAAATTCAAATTGTTTGTACTTCGAAGAAGAAGTTGCATGAGA
TTCTACAAAATCAAAATGACTTGCCGTCTAGTTGCAATACAACTAATAAT
GCTCCTACCAATACAAAATCACTTGACCCTACTCCTACCAATATAAAGTC
ACTCGACCTAGCATCTACTATAGAGTCTAAAGATTCAGGCTCAGAGACAG
AAAAAGTCGAGAATGATCAAGCTAAAAGAAGAGGTAGAAAACGAATTTAC
CATTCGAACACAGAAACAGAGCGTGAAGACTCGAAACGTGTACGTAACAA
TGAAGCTTGTCGTAAATTTCGTAAAAGTCGTACCGAAAAACGTAAATCGT
TATTCCAAAGCGAATCAACTTTGCTACAACGTAACTTAAATTTGAAAGAA
CAGGTAGCTGCCCTTGAAAGACAATTATTATATATCAAAGAAAAGTTGGG
TATGTCTAAAAACATATCTAACAATTAAATGAACTTACTTTTGCCAACTC
AGTTTATGAAAAATCATCTTTCCTTCTGGACCAAGAATCCAAGTATTGTC
TTTGACCAGGGTGCTTCAACTGTCTGGGGACAGGATTCAATCAGAGAAGA
GAAGGCATCATTTGACGAACAGTTCTATGCAAGTTCGACTTTATTCGATA
CAGAATTCGATTTCATTCCATCTTCGTTAGATGATCCTTTTCTTTATAAT
TTGACCAATCCATTTAAAGACTGTGAAATGATGTCTTCCCCAGATCGTAC
GAGAAAATGTTCCATTTCTGATATTATTGATGTAATTAACGAAGAAAAAT
TATTAATTAAAAATTGTGGTTCTCTGAACAACAAGGATGAAGGTTATGAT
TCAAATCTCTCCATTGGAAGTCTCTCCTCTGAAGAAATTGGCCAAGATGA
ATTTGAGGGGAAATTCACTACTGAAGAAAATTCGAGTGATGATGAGTGCT
TTATTAATGTTGAAGATGAGTTACCAGTTATTCAAGATCAAACCACTAAA
GCGGATCTACAACCACAATCCAAGGTTATTGGAAATCTAGTTTCATCAAC
TGGGTTACCGAAATTATTATCGGGTTCTAATAGTAGTGCTATTATTGTTT
TATGGAACACTGAAAATAAAATTCAAATTGTTTGTACTTCGAAGAAGAAG
TTGCATGAGATTCTACAAAATCAAAATGACTTGCCGTCTAGTTGCAATAC
AACTAATAATGCTCCTACCAATACAAAATCACTTGACCCTACTCCTACCA
ATATAAAGTCACTCGACCTAGCATCTACTATAGAGTCTAAAGATTCAGGC
TCAGAGACAGAAAAAGTCGAGAATGATCAAGCTAAAAGAAGAGGTAGAAA
ACGAATTTACCATTCGAACACAGAAACAGAGCGTGAAGACTCGAAACGTG
TACGTAACAATGAAGCTTGTCGTAAATTTCGTAAAAGTCGTACCGAAAAA
CGTAAATCGTTATTCCAAAGCGAATCAACTTTGCTACAACGTAACTTAAA
TTTGAAAGAACAGGTAGCTGCCCTTGAAAGACAATTATTATATATCAAAG
AAAAGTTGGGTATGTCTAAAAACATATCTAACAATTAAATGAACTTACTT
TTGCCAACTCAGTTTATGAAAAATCATCTTTCCTTCTGGACCAAGAATCC
AAGTATTGTCTTTGACCAGG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00011982-exon-sc0000134-1575043694:324749..325331 | TCONS_00011982-exon-sc0000134-1575043694:324749..325331 | Clytia hemisphaerica | exon |
| TCONS_00011982-exon-sc0000134-1575043694:320514..322001 | TCONS_00011982-exon-sc0000134-1575043694:320514..322001 | Clytia hemisphaerica | exon |
| TCONS_00011982-exon-sc0000134-1510915933:324749..325331 | TCONS_00011982-exon-sc0000134-1510915933:324749..325331 | Clytia hemisphaerica | exon |
| TCONS_00011982-exon-sc0000134-1510915933:320514..322001 | TCONS_00011982-exon-sc0000134-1510915933:320514..322001 | Clytia hemisphaerica | exon |
| TCONS_00011982-exon-sc0000134-1491911889:324749..325331 | TCONS_00011982-exon-sc0000134-1491911889:324749..325331 | Clytia hemisphaerica | exon |
| TCONS_00011982-exon-sc0000134-1491911889:320514..322001 | TCONS_00011982-exon-sc0000134-1491911889:320514..322001 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000134 | supercontig | sc0000134:320514..325331 - |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR004827 | bZIP |
Vocabulary: Biological Process
| Term | Definition |
|---|
| GO:0006355 | regulation of transcription, DNA-templated |
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0003700 | transcription factor activity, sequence-specific DNA binding |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| biological_process |
GO:0006355 |
regulation of transcription, DNA-templated |
| molecular_function |
GO:0003700 |
transcription factor activity, sequence-specific DNA binding |
Blast
The following BLAST results are available for this feature:
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