TCONS_00011984 (transcript) - C. hemisphaerica

Overview
NameTCONS_00011984
Unique NameTCONS_00011984
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1696

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00011984 ID=TCONS_00011984|Name=TCONS_00011984|organism=Clytia hemisphaerica|type=transcript|length=1696bp
TAAGGACGTAAGTTTTAAGtttaatgttaaaactctactttccaaccgta
ctttaaagcacttaaaagtcacttgcggttttagttttgagggaaatccc
cttttgtgccaaatattattGCGGTGATCTATGCTAATCTATGCTAATCT
AGTAAGAGGAACAATgacatttcataattttttttcttgtatcGAATAGA
CCTGGCAAGTAACGATTCTTAACACTTTTACAGTGAGAAAACCTAATATA
TCGGGAAGAGCACCACCCCGTCCTCCGTCCCACCCAACACAAATAGCACC
ACCACCACCGCCACATCGTTCAGTAAGGTATACTTACAGAAATGGTCCAA
ATGATCCAAAGATTGTTTTAAAGGATCCACGCTGGTTTGCATTATTTGTG
CACATTGGTATAACACAAGCTCAACTTGACGATGAAGAGACGTTCAAAGA
ACTTTACGCTTTTGTACAGACAAACGGTGGTATTGAAACAGCCCGTATGA
AATTGCCTCAAAAtgagtATGGAAAATATAATGGCCTCGCTCCACCTCCT
TTACGAGGGTTTGCTGGTAGTAGTGACCACCCCTTCCAAGCATCAACAAA
TCCTGTTGCATTGACAAGAAATCGGTGTGATAGGAGGACTTTACGAGGGC
CATCGACACGGAATTGTGAAGACACTTATGATACTGGCTCATTGAATACA
CAAACAGTACCAAGAAAAAGCAGTGGCGATTGGCGAGTAAAACAACTCGA
TTCGTGGACTGTTGAAGATGTTTGTGATTGGCTGAAAGACATTTCTCTGG
AAGAATATTGTGAATTGTTCCGCTTTCATGCGATCGATGGTGTTGAGTTG
TTGGAACAGAATGAAGAATCACTAGTAGACGCTCTTAAAATAGAGCCATT
CGGTCACCGAAGGAAGATTATGAGGAATTTAACTAAAttattagaaaaag
aaaaagaagaagagaagagaaCTAAAGAAAAAGAGGAGGAAACACCGGAC
GAATTTCTCTGTCCGATAACTCAAGAGTTGATGACTGATCCTGTTATCGT
GGCAGACGGTTACACATACGAACGAGCATCAATCACTCAATGGTTTGAAA
CTGGAAACAATAGAAGTCCAATGACAAATTTACCGTTGGAAAACCGAAAC
CTCGTTCCAAATAGATCGCTTAAAGACGCTATTAACAGACATCTTGGACA
AtaacttatctgatattccaatggcggccgcccacgcttgAGTGTTCAAT
TTCCCATCGGGGAGGATGATAGCCAGCCTTTGCCACATCGATTGTCGATT
TCAAATACCCTTTCCCGTAAGTCTGAAAATATTTCAGCTGGACctgccaa
tccccgaaaacgagcgCTGGAAAATCCGTGACGTGGTCGTGGGAAATTCC
GTGATCAAAACCATCAAATGTTATGTTGTAAATTGTCCCCAACCTTTTAA
AGTACTAGCGTGCCAGTAGAATAATAACACACGGTGAAACATTTTAAATT
ACACAGAATTACATATTGGACActtaaatataatataatacagtaagcag
taaaaaataaattttatatggACTTAACACAATCCGCTATATCAAGATTT
CGCTCAAGAAAAAAACTCTGGACTATTTCatggaaatataattttgatta
atttttatataatatgtTATTGTAAGGTAATTTAAGTGaattgctc
Run BLAST on NCBI

transcript from alignment at sc0000134:373725..377533-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00011984 ID=TCONS_00011984|Name=TCONS_00011984|organism=Clytia hemisphaerica|type=transcript|length=3809bp|location=Sequence derived from alignment at sc0000134:373725..377533- (Clytia hemisphaerica)
TAAGGACGTAAGTTTTAAGTTTAATGTTAAAACTCTACTTTCCAACCGTA
CTTTAAAGCACTTAAAAGTCACTTGCGGTTTTAGTTTTGAGGGAAATCCC
CTTTTGTGCCAAATATTATTGCGGTGATCTATGCTAATCTATGCTAATCT
AGTAAGAGGAACAATGACATTTCATAATTTTTTTTCTTGTATCGAATAGA
CCTGGCAAGTAACGATTCTTAACACTTTTACAGTGAGAAAACCTAATATA
TCGGGAAGAGCACCACCCCGTCCTCCGTCCCACCCAACACAAATAGCACC
ACCACCACCGCCACATCGTTCAGTAAGGTAAAGTCGACTAAAAAAATCTA
ACTTTTAATATATATCAGGAAGCTTGAGGAGCTTGAGGCCCGCTTCTGTC
CTTTTGTTTAAATTATTAGAGACTTTAAAGGAAGAAATTTTGGAGGAAAG
AACATTTGGTAGATTTGGCAGATTTAGCCGTCAAATTGAGTTCCCGCCAA
ATTTAACTTTTCCAGCCATCCGCCAAACCAAATTCCCGCAAAAATTTCTC
TCATTAAGGTCGGGGCCCAATTTTAGGGTACAGTGTCATTTTTTGTCGGC
GTCTTTTGGTCTTTGTATTTTGTATTTTAGAGACTGATCTGCAAATGCGA
AATACCCCCGGAAATACCCTTTGGACCAAATGTTTTTAGTCATGTTAGCT
TTTTAGAAAAGTCAGCTTTCAGGAGAAAATGTTGGAGAAACTTACCCAAT
AATCTCCGTTTAACCAATAAAAATGGATCTCCTACAAAAAGTGGGAAGAT
GCACCTGGGTTTAGTAGTCGGCGGTTTAGAACAATATTTTCCCAGAAAAG
CTCAACGGAAATGAATTTAAACTTTTAGGTATACTTACAGAAATGGTCCA
AATGATCCAAAGATTGTTTTAAAGGTAAGCATAGATTAAAGTTTGCAGAA
TGTTACAGGTTTGAGCTCACTCAAAAGCCTCAAAGTCTTATTTTGACCAA
TTGCCTTTAAAAGTAGTGATAGCCACTGATCTCAAACTACTTGACTGGGT
CGGGCTTTTTATATAAAAGGAAGTGTGTCAAGTTTTAGAGCTTACTTGTT
CGCCATCTTGTTTTCACTTCTGTTCGTCAACAGCGCGATTTGAATGCTTT
GTAAAATAGAAAACAACATGGTTGACTTCAAAATTGGATACACTTCCACA
GGAAATCTGTGAGCAGTTAGCCTTTTAGTGTGTAAAAGAATATGATGTAT
GTGAGTTCGACTACGGCGCTACATCACAGATATCTCACAAAAAGGTATAT
AGACATGGCACTTTCCTCGATAAACCCCATTGAGTAGTTTTAGCATTAGG
GTACCAAAAGAACTGCGGTTAAAAAGTTTTACTGGCCGAACTTGCCTCCA
GGGCTTGTATAAAGCTCTATGGTCATATTACCTTTAGGATCCACGCTGGT
TTGCATTATTTGTGCACATTGGTATAACACAAGCTCAACTTGACGATGAA
GAGACGTTCAAAGAACTTTACGCTTTTGTACAGACAAACGGTGGTATTGA
AACAGCCCGTATGAAATTGCCTCAAAATGAGTGTAAGAAAATATTTTTTC
GAGGATTTACAACAGATCCATTGTCACATCGTTTTCTTTACCCAACAAAG
TTGTTGCTAACGGTTTACCGCCTGGTGGGAAAGTTATCGGGGCGCAATCA
ATCCTGATTACCCGTGATCCATTTCGACTGTGAAATGGATCCATTTTGAC
TGTGTAATGGAACAAGAATAGACCAATTATATTTAATTCTGCACGTTATG
AAAATTAAATTAGGGTTATCAATGGCTTCTGGTTTTCGAAATATCATTGA
AATCCGTAAAAACGGATGTTCGAAGAAAAAACAAATATTTTAATAATGAA
ATATTTTTGTAGCATGGTTTGCTTCCCTACATCAAAACTTACCAGGTTAT
TCTCTTGTATATTCAACCCAGTTAATTTGGATGCTTTCCATTTAATTTCA
GATGGAAAATATAATGGCCTCGCTCCACCTCCTTTACGAGGGTTTGCTGG
TAGTAGTGACCACCCCTTCCAAGCATCAACAAATCCTGTTGCATTGACAA
GAAATCGGTGTGATAGGAGGACTTTACGAGGGCCATCGACACGGAATTGT
GAAGACACTTATGATACTGGCTCATTGAATACACAAACAGTACCAAGAAA
AAGCAGTGGCGATTGGCGAGTAAAACAACTCGATTCGTGGACTGTTGAAG
ATGTTTGTGATTGGCTGAAAGACATTTCTCTGGAAGAATATTGTGAATTG
TTCCGCTTTCATGCGATCGATGGTGTTGAGTTGTTGGAACAGAATGAAGA
ATCACTAGTAGACGCTCTTAAAATAGGTTAGTATCCATTACAGAACCTCC
AGACTTTGGATAGGCACTTATGCTCTTTACAAAAGTAAACTGGGTAGACT
TAAGTATTGGATTTGTATAATGTTTTGAAAAATACTTTAGCTTTAGCCAG
TATGATAAACAATTCATCATTCGATCTCTTTTTAGAGCCATTCGGTCACC
GAAGGAAGATTATGAGGAATTTAACTAAATTATTAGAAAAAGAAAAAGAA
GAAGAGAAGAGAACTAAAGAAAAAGAGGAGGAAACACCGGACGAATTTCT
CTGTCCGATAACTCAAGAGTTGATGACTGATCCTGTTATCGTGGCAGGTA
AAAGACATTACCTTAAGTGGTTTGGACAAACTGATTGTCCATTTTAATCT
GTGATAAAACGCCCCTGTATCACAGGCCCCGACAACTTTCGCCAGAATTT
TGTCCCCACGATGTAAAATACCCTACAATTTCAACCCCACTGGAAAGTTG
ACTTTGTTTGCATCCCCATTTAAAATTCAATGGAAAATCACACTCCAAAA
CCACCCTCACTGGTCTTTAACCTTGGAAAAATAGAATTTCTATCACGATT
GGGATTTTGATAAGGTTTTTCATCGCCACTTTAGGAAGAAGTGTGATGTA
GTGAATGCGGTGACCTAATAAAATTGTTAAGGATAAACTAAACTGATCGA
TATGTATTTTTTTTGTTCTAACAAGGAAAGATTGCACCAGCTCGTAGCTA
CAGTTATTCCTATACATCATTACTAAATTACTAAATTTTGGTTCTTCTAT
TTTCCTATCATTCTTTAGACGGTTACACATACGAACGAGCATCAATCACT
CAATGGTTTGAAACTGGAAACAATAGAAGTCCAATGACAAATTTACCGTT
GGAAAACCGAAACCTCGTTCCAAATAGATCGCTTAAAGACGCTATTAACA
GACATCTTGGACAATAACTTATCTGATATTCCAATGGCGGCCGCCCACGC
TTGAGTGTTCAATTTCCCATCGGGGAGGATGATAGCCAGCCTTTGCCACA
TCGATTGTCGATTTCAAATACCCTTTCCCGTAAGTCTGAAAATATTTCAG
CTGGACCTGCCAATCCCCGAAAACGAGCGCTGGAAAATCCGTGACGTGGT
CGTGGGAAATTCCGTGATCAAAACCATCAAATGTTATGTTGTAAATTGTC
CCCAACCTTTTAAAGTACTAGCGTGCCAGTAGAATAATAACACACGGTGA
AACATTTTAAATTACACAGAATTACATATTGGACACTTAAATATAATATA
ATACAGTAAGCAGTAAAAAATAAATTTTATATGGACTTAACACAATCCGC
TATATCAAGATTTCGCTCAAGAAAAAAACTCTGGACTATTTCATGGAAAT
ATAATTTTGATTAATTTTTATATAATATGTTATTGTAAGGTAATTTAAGT
GAATTGCTC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_006725XLOC_006725Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00011984-exon-sc0000134-1575043694:377207..377533TCONS_00011984-exon-sc0000134-1575043694:377207..377533Clytia hemisphaericaexon
TCONS_00011984-exon-sc0000134-1575043694:376610..376655TCONS_00011984-exon-sc0000134-1575043694:376610..376655Clytia hemisphaericaexon
TCONS_00011984-exon-sc0000134-1575043694:375952..376096TCONS_00011984-exon-sc0000134-1575043694:375952..376096Clytia hemisphaericaexon
TCONS_00011984-exon-sc0000134-1575043694:375158..375532TCONS_00011984-exon-sc0000134-1575043694:375158..375532Clytia hemisphaericaexon
TCONS_00011984-exon-sc0000134-1575043694:374837..374998TCONS_00011984-exon-sc0000134-1575043694:374837..374998Clytia hemisphaericaexon
TCONS_00011984-exon-sc0000134-1575043694:373725..374365TCONS_00011984-exon-sc0000134-1575043694:373725..374365Clytia hemisphaericaexon
TCONS_00011984-exon-sc0000134-1510915933:377207..377533TCONS_00011984-exon-sc0000134-1510915933:377207..377533Clytia hemisphaericaexon
TCONS_00011984-exon-sc0000134-1510915933:376610..376655TCONS_00011984-exon-sc0000134-1510915933:376610..376655Clytia hemisphaericaexon
TCONS_00011984-exon-sc0000134-1510915933:375952..376096TCONS_00011984-exon-sc0000134-1510915933:375952..376096Clytia hemisphaericaexon
TCONS_00011984-exon-sc0000134-1510915933:375158..375532TCONS_00011984-exon-sc0000134-1510915933:375158..375532Clytia hemisphaericaexon
TCONS_00011984-exon-sc0000134-1510915933:374837..374998TCONS_00011984-exon-sc0000134-1510915933:374837..374998Clytia hemisphaericaexon
TCONS_00011984-exon-sc0000134-1510915933:373725..374365TCONS_00011984-exon-sc0000134-1510915933:373725..374365Clytia hemisphaericaexon
TCONS_00011984-exon-sc0000134-1491911889:377207..377533TCONS_00011984-exon-sc0000134-1491911889:377207..377533Clytia hemisphaericaexon
TCONS_00011984-exon-sc0000134-1491911889:376610..376655TCONS_00011984-exon-sc0000134-1491911889:376610..376655Clytia hemisphaericaexon
TCONS_00011984-exon-sc0000134-1491911889:375952..376096TCONS_00011984-exon-sc0000134-1491911889:375952..376096Clytia hemisphaericaexon
TCONS_00011984-exon-sc0000134-1491911889:375158..375532TCONS_00011984-exon-sc0000134-1491911889:375158..375532Clytia hemisphaericaexon
TCONS_00011984-exon-sc0000134-1491911889:374837..374998TCONS_00011984-exon-sc0000134-1491911889:374837..374998Clytia hemisphaericaexon
TCONS_00011984-exon-sc0000134-1491911889:373725..374365TCONS_00011984-exon-sc0000134-1491911889:373725..374365Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000134supercontigsc0000134:373725..377533 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0.0279292	0	0	0.195534	0.161065	0.150978	0.241662	0.233583	0	0.239423	0	0.000543919	0	0.243627	0.0817744	0.559569	0	0	0.180492	0.151531	0.191187	0	0	0	0	0	0	0.0316237
Blast
[Close]
BLAST of TCONS_00011984 vs. Swiss-Prot (Human)
Match: WSDU1 (WD repeat, SAM and U-box domain-containing protein 1 OS=Homo sapiens GN=WDSUB1 PE=1 SV=3)

HSP 1 Score: 124.405 bits (311), Expect = 1.785e-30
Identity = 73/182 (40.11%), Postives = 105/182 (57.69%), Query Frame = 2 
Query:  653 STRNCEDTYDTGSLNTQTVPRKSSGDWRVKQL-DSWTVEDVCDWLKDISLEEYCELFRFHAIDGVELLEQNEESLVDALKIEPFGHRRKIMRNXXXXXXXXXXXXXXXXXXXXXXPDEFLCPITQELMTDPVIVADGYTYERASITQWFETGNNRSPMTNLPLENRNLVPNRSLKDAINRHL 1195
            +T + + T +    + +T+ +    + ++KQ  + W+ EDV  WL    L++   +F+ + IDG ELL   +ESL D LKIE  G R K++R + +L  K K             PDEF+CPIT+ELM DPVI +DGY+YE+ ++  W       SPMTNL L +  L PNR+LK AINR L
Sbjct:  297 ATGSMDKTVNIWQFDLETLCQARRTEHQLKQFTEDWSEEDVSTWLCAQDLKDLVGIFKMNNIDGKELLNLTKESLADDLKIESLGLRSKVLRKIEELRTKVKSLSSGI-------PDEFICPITRELMKDPVIASDGYSYEKEAMENWISKKKRTSPMTNLVLPSAVLTPNRTLKMAINRWL 471
The following BLAST results are available for this feature:
BLAST of TCONS_00011984 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
WSDU11.785e-3040.11WD repeat, SAM and U-box domain-containing protein... [more]
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