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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00011988 ID=TCONS_00011988|Name=TCONS_00011988|organism=Clytia hemisphaerica|type=transcript|length=3676bp CAAAAGTCCAATTGATAGATGTGATAAATTTCTGTTGGAAAGGGGTGTAT CACTAATGCAGTATCCATCAAAAAAAAGATGACTAGTTGATAGACGAACA AAAAGTAACAACATTCTGCAGCAATGATATTGAAACTACTCAGTCGTTTT GGATTCTTGATTTTTCTGGTGACGTCATGGACCATCATTATCTGCACCAC AATTCCTTTGCTCCCATTCAGCATGACAATCCTCATAACTCGTAAACTAG AAGAAATCGTCTATCGAATCTTATACAGAGCCTTACATTTCAAAACTGAG GAAACGCCCTGGTTAACTGATACGCCCCGAAATCGTACCGACATCAACTG TCTATTAATGCTTGAAGGGAAATTGGGTATTAAAAAATTCCAGGGTTTAA TGGACCGAAAATTAGTTAAAGCACGTAATACAAAAACAGGGAAGTTATTA TATCCAAGAGTGACTGAATATGTTCATACAGGATACTTAAATTATTACTG GTTGGAAGAAACGAATTTCAAACTTAAAGATCATGTTTACGAATGGAGTG AAAATCCATGCCGATCTAAAAATCAGTTACAAGACTTAATATCCAAACTT GCTGAACGTCCACTTCGATCCTCAGACAATAAATCGCCATGGGAATTTGT TGTAGTTCATTGTAGAAATACAGATGGGTTCATACAATCCGGAATTATAG TACGGATTTCACATTGTTTAGCTGATGGAACTTCTCTTATGTATTTTCTC ATAAACCATTTGTGTGACGATTCCAACAATAATGGATACTTAGCTGGCCC AGAACATCAGATTTCCTTTACACAAAAATCAATGATTTATCtaaaatctt caatttactACCCTTACAATGTGGCGAAAACCTTAGCTCCGCAATGGACG CGCCCGACATCGTTGAACTGTCCGGAAGCCTCCTTATCCGGAAAGAAACG TTATATTTACGCTCGACCAATTAATCTGGAACTTATCAAAATTATCAAAC GAAACTTAAATGTCACGATCAATGATGTCATTTTGGGTTGCATAGCAACT AGCCTACATAACTTTTTCCGAAAAAAGAACGAAAAGGCGCCTCATAATTT GATCACGTGTATACCGTTAGATACCAGGCTTTCACTTGAACAGGCTAAAG AATTCAGTAATAAAATAAACATTACTATGCTTCCGCTACCCACATCAAGC GCCGATTCGAtcagaaatattttggaaattcaCGATCGAATGAAGTCTAG GAAAGATTCTTTAGAAGGAATGAGTATGCGAATTGGGTTGCGTCTTTTAG CTGAAATGACACCGAACTGTGCTATGCAGGAGATCATTCGATCATCTGCT AGTAATGCTGTAATGATTGTATCTAATGTCCAAGGGCCATCCCACGAGTT AATGCTTGCTGGAAATAAATTAAGTTCTTTAGTCTTCTGGCCACCCGGTA AGGATAGCATCGGGTCGTCGATTTCAATAATGAGTTATAATGGATTTATA TACACTGGAGCACTGAGTGATACGAATATTATGAAATATCCTGAAAAAAT GATTGAAGATCTTCCAGCTATTATTATGTCACTTGCTGAAAGCTTTACAT CTAAGAAAAATGCATATTCATCAGATTGAATAAATGTTACATGTATAGCG TGTCCCGgaaaaagcggacaaatttctgtataaagtaaaatcctcgaAAC TCATTATCCAAACTGGacttaaaataattgaaataagttagcaattctct gttcaatcaatagatattcaataCCCAAGATTATTGGAAAgctttttgag attgaaatatcAAGTAatacaagtcataaaatttggcatAAACAAGGAGG ATTTTATTTAATATAAAAAATGCgtcctttttttgggacacactgtaggT AATGTGTAAAAAAGTAGACGATTTTAAATTGAgtaaaatcctgaaaattt atcatccttttgaatttagaaaagttaaaataaacggaaattatttttgt ttaatcaaaaaattttcgattctcaaagtaaacaaaatgcgttttagaaa aaaatggagcaattagttgactctctctaattcgacattcaAGGGCCCAA AGATGTTCTTCAAATTAGaggaagattcgaattacagaaagtattttata ctaatttctAGCTGAGAGGACAAATACATTGACAAAACCTTTGGCACAAA AGCACAAAAATGAGCATCCCCTTCTCTTCCCCCCAAAAAATGTTGTTGGG GCAAGCTAAGGACCGGCCAAGCAATATTTATTTCCCTCCAACATTGTTCG GAGTGGAGGGGGGTGTTATGTGCCATGATATATTGGTTGTAgttcgaatt aaaaaaaacgttcaaatagtagaggttcgaattagagagagttgattgta ttttataaaaattcacATTAAAAATGTATTTCTATTTATATAAATTCCAT TCTTTTatgattttctcattttcttaagGAGCATCTTAGTTGTACAGCAG AATTTGAAATGTGTGTTTTAAATGTGGCTGAAGCTGGTTGGGTATGTAAG AATTtaacagatgagatggagtttttataagatactttaataattaaatt ggtcatttgaagtaacaaaaatgacgcgttctttagaaaaagtaacaaaa ttgttttattactgattgacgaccaaccaaatcaaataagagcttgtaaa aactccatctcgtcccgaaTTTAGATCattaaaaatcgaaaagtttCTTC GAATTAAACACAAATTAGAGAAAGAGAGGAAATAAGGCATGCAAGCTCAA GTTTATGATGTGATAAAATCCCGATAAAATTAATTCTCaaagattcttat aaaatttttttaaacatgatTTTTTAATTAAGATTTCAATAAAtgtataa aagaaaatttttaatctcatagcatttaaatgtatatttagaaatattat tagcagatttattttgaatttttattggattagagatatattaaCAAATT ATTtagcaaaagaaaaaatattacatATTATGTACaagtttaattttaat ttcgATACCGTAAAATTTAAAACTAAATGATATTTTCAAAGTTCAGAGAA TTGATGAGAGTGGAAATTTGTNaaagaaaaaatattatgtacaagtttaa ttttaatttcgATACCGTAAACTAAATGATATTTTGAAAGTTCAGTGAAT TGATGAGAGTGGAAATTTGTCTGATTCTGTAGGAAAAGAAACTACAGgaa gaccttttcataaattacgtcacgaacatcacttgcctcgtattcaaaca attaccatggtcaTTATGACCCTTGAGACATGAAGTGATTTTTTGATGAA TTAGGaattaatcaccatggcaataatttcaaaacaaggcaagtgatgtt cctaacgtaatttatgaaaagatctattgttggcgattatttttttttaa gtaagcAATTTGTAGCTACATAAGTACTGTGAACTTTGAATTTAGACTGA AATCTCCATAGCACGAAGCTCTTTCACTAGAATTTCTTCTTAAGTTGATC GAGTTGTTTGGGCCCTTCAATAAACAAACTCGAGAATAAATTGAGTGTTA GAGAGGACAAACACTGGTATCTCTCGGGTGTATCCGAATAAGTGTATCCA TAACCATCATGATTCAATAGCGTATA Run BLAST on NCBI protein sequence of TCONS_00011988-protein >TCONS_00011988-protein ID=TCONS_00011988-protein|Name=TCONS_00011988-protein|organism=Clytia hemisphaerica|type=polypeptide|length=501bp
MILKLLSRFGFLIFLVTSWTIIICTTIPLLPFSMTILITRKLEEIVYRIL YRALHFKTEETPWLTDTPRNRTDINCLLMLEGKLGIKKFQGLMDRKLVKA RNTKTGKLLYPRVTEYVHTGYLNYYWLEETNFKLKDHVYEWSENPCRSKN QLQDLISKLAERPLRSSDNKSPWEFVVVHCRNTDGFIQSGIIVRISHCLA DGTSLMYFLINHLCDDSNNNGYLAGPEHQISFTQKSMIYLKSSIYYPYNV AKTLAPQWTRPTSLNCPEASLSGKKRYIYARPINLELIKIIKRNLNVTIN DVILGCIATSLHNFFRKKNEKAPHNLITCIPLDTRLSLEQAKEFSNKINI TMLPLPTSSADSIRNILEIHDRMKSRKDSLEGMSMRIGLRLLAEMTPNCA MQEIIRSSASNAVMIVSNVQGPSHELMLAGNKLSSLVFWPPGKDSIGSSI SIMSYNGFIYTGALSDTNIMKYPEKMIEDLPAIIMSLAESFTSKKNAYSS D Run BLAST on NCBI transcript from alignment at sc0000134:416431..421070- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00011988 ID=TCONS_00011988|Name=TCONS_00011988|organism=Clytia hemisphaerica|type=transcript|length=4640bp|location=Sequence derived from alignment at sc0000134:416431..421070- (Clytia hemisphaerica) CAAAAGTCCAATTGATAGATGTGATAAATTTCTGTTGGAAAGGGGTGTAT
CACTAATGCAGTATCCATCAAAAAAAAGATGACTAGTTGATAGGTATGTT
CTGGAGTTTTCGTAAGATTGGTCATTTGAAATAATAGAAATGGCGCGTTC
TTTAGAAAAAGCAACAAAATTGTTATATATATACAGGTTAACAACCAACC
AAATCTAGAAAGAGCTTTCTAAAAACTCCATCTCTTCCCAGTTGATAATG
TCATTTGGATGGGAGTTAGAACGAAAATCTAGTGCTTGTGAGAATTCGCA
TAATTCTACAGTGAGCTTTGAAATATAATTTTGAATACCCATGCTTTGAA
ATATAATTTTGAATACCCATGCATGGGTATCTACAGGGACGCTTTTCCAA
TGAGGAAGGCTGAATTGTTTATGATAAAGGGGTGTGGTTTGTGTTGACGT
TATGCTTAGAATAAGGGTGTGTGCATCAGAAAATGACTAGACACTGACTG
AACTTTATGATTGGTTTCAGCAGATATTTGACAACCTCTTGCATTTTGTT
TTGACAGGATAAGGATATCTCTTCACACTGTATTCTAGTGATTTATTTCT
TAGATTGTCAAAATAAATCTGTATAAAAATGAGTCTGTTTTCAGCGACAG
AAGAGTCAGAAAAAAACACGACACTCTTGGTGTTATTGTTGCTTAAGAAA
GTTCAACATGAAATATAGTGCTCTGTATGTAATAGGCACTCTCTGACACA
GATCATACTTATGTCAATGCATTCTTTTTATGTCTCAGTTTACAACAAAA
GGCAGATTCATTTACTTTGGGTAGTTTGTGGGTGTTCCTACTTTGCTTGC
TTTGGGAAACAAACATTATGATTTTTTAGCTTCTCTGTTTTAAACATTTA
CGTTTTATGATTTTTCAATTTGTACTGTGATGTGTTCGATGATCAATTTT
TGTTGGATGTTGGAATGAGAGAGTCTGATACAGGATGAACCATGTCTAGC
TTTTCCAACTTTGAATAAATCTTGATTTATAAATCCTTGATCTATTCTAT
CTTTCAGACGAACAAAAAGTAACAACATTCTGCAGCAATGATATTGAAAC
TACTCAGTCGTTTTGGATTCTTGATTTTTCTGGTGACGTCATGGACCATC
ATTATCTGCACCACAATTCCTTTGCTCCCATTCAGCATGACAATCCTCAT
AACTCGTAAACTAGAAGAAATCGTCTATCGAATCTTATACAGAGCCTTAC
ATTTCAAAACTGAGGAAACGCCCTGGTTAACTGATACGCCCCGAAATCGT
ACCGACATCAACTGTCTATTAATGCTTGAAGGGAAATTGGGTATTAAAAA
ATTCCAGGGTTTAATGGACCGAAAATTAGTTAAAGCACGTAATACAAAAA
CAGGGAAGTTATTATATCCAAGAGTGACTGAATATGTTCATACAGGATAC
TTAAATTATTACTGGTTGGAAGAAACGAATTTCAAACTTAAAGATCATGT
TTACGAATGGAGTGAAAATCCATGCCGATCTAAAAATCAGTTACAAGACT
TAATATCCAAACTTGCTGAACGTCCACTTCGATCCTCAGACAATAAATCG
CCATGGGAATTTGTTGTAGTTCATTGTAGAAATACAGATGGGTTCATACA
ATCCGGAATTATAGTACGGATTTCACATTGTTTAGCTGATGGAACTTCTC
TTATGTATTTTCTCATAAACCATTTGTGTGACGATTCCAACAATAATGGA
TACTTAGCTGGCCCAGAACATCAGATTTCCTTTACACAAAAATCAATGAT
TTATCTAAAATCTTCAATTTACTACCCTTACAATGTGGCGAAAACCTTAG
CTCCGCAATGGACGCGCCCGACATCGTTGAACTGTCCGGAAGCCTCCTTA
TCCGGAAAGAAACGTTATATTTACGCTCGACCAATTAATCTGGAACTTAT
CAAAATTATCAAACGAAACTTAAATGTCACGATCAATGATGTCATTTTGG
GTTGCATAGCAACTAGCCTACATAACTTTTTCCGAAAAAAGAACGAAAAG
GCGCCTCATAATTTGATCACGTGTATACCGTTAGATACCAGGCTTTCACT
TGAACAGGCTAAAGAATTCAGTAATAAAATAAACATTACTATGCTTCCGC
TACCCACATCAAGCGCCGATTCGATCAGAAATATTTTGGAAATTCACGAT
CGAATGAAGTCTAGGAAAGATTCTTTAGAAGGAATGAGTATGCGAATTGG
GTTGCGTCTTTTAGCTGAAATGACACCGAACTGTGCTATGCAGGAGATCA
TTCGATCATCTGCTAGTAATGCTGTAATGATTGTATCTAATGTCCAAGGG
CCATCCCACGAGTTAATGCTTGCTGGAAATAAATTAAGTTCTTTAGTCTT
CTGGCCACCCGGTAAGGATAGCATCGGGTCGTCGATTTCAATAATGAGTT
ATAATGGATTTATATACACTGGAGCACTGAGTGATACGAATATTATGAAA
TATCCTGAAAAAATGATTGAAGATCTTCCAGCTATTATTATGTCACTTGC
TGAAAGCTTTACATCTAAGAAAAATGCATATTCATCAGATTGAATAAATG
TTACATGTATAGCGTGTCCCGGAAAAAGCGGACAAATTTCTGTATAAAGT
AAAATCCTCGAAACTCATTATCCAAACTGGACTTAAAATAATTGAAATAA
GTTAGCAATTCTCTGTTCAATCAATAGATATTCAATACCCAAGATTATTG
GAAAGCTTTTTGAGATTGAAATATCAAGTAATACAAGTCATAAAATTTGG
CATAAACAAGGAGGATTTTATTTAATATAAAAAATGCGTCCTTTTTTTGG
GACACACTGTAGGTAATGTGTAAAAAAGTAGACGATTTTAAATTGAGTAA
AATCCTGAAAATTTATCATCCTTTTGAATTTAGAAAAGTTAAAATAAACG
GAAATTATTTTTGTTTAATCAAAAAATTTTCGATTCTCAAAGTAAACAAA
ATGCGTTTTAGAAAAAAATGGAGCAATTAGTTGACTCTCTCTAATTCGAC
ATTCAAGGGCCCAAAGATGTTCTTCAAATTAGAGGAAGATTCGAATTACA
GAAAGTATTTTATACTAATTTCTAGCTGAGAGGACAAATACATTGACAAA
ACCTTTGGCACAAAAGCACAAAAATGAGCATCCCCTTCTCTTCCCCCCAA
AAAATGTTGTTGGGGCAAGCTAAGGACCGGCCAAGCAATATTTATTTCCC
TCCAACATTGTTCGGAGTGGAGGGGGGTGTTATGTGCCATGATATATTGG
TTGTAGTTCGAATTAAAAAAAACGTTCAAATAGTAGAGGTTCGAATTAGA
GAGAGTTGATTGTATTTTATAAAAATTCACATTAAAAATGTATTTCTATT
TATATAAATTCCATTCTTTTATGATTTTCTCATTTTCTTAAGGAGCATCT
TAGTTGTACAGCAGAATTTGAAATGTGTGTTTTAAATGTGGCTGAAGCTG
GTTGGGTATGTAAGAATTTAACAGATGAGATGGAGTTTTTATAAGATACT
TTAATAATTAAATTGGTCATTTGAAGTAACAAAAATGACGCGTTCTTTAG
AAAAAGTAACAAAATTGTTTTATTACTGATTGACGACCAACCAAATCAAA
TAAGAGCTTGTAAAAACTCCATCTCGTCCCGAATTTAGATCATTAAAAAT
CGAAAAGTTTCTTCGAATTAAACACAAATTAGAGAAAGAGAGGAAATAAG
GCATGCAAGCTCAAGTTTATGATGTGATAAAATCCCGATAAAATTAATTC
TCAAAGATTCTTATAAAATTTTTTTAAACATGATTTTTTAATTAAGATTT
CAATAAATGTATAAAAGAAAATTTTTAATCTCATAGCATTTAAATGTATA
TTTAGAAATATTATTAGCAGATTTATTTTGAATTTTTATTGGATTAGAGA
TATATTAACAAATTATTTAGCAAAAGAAAAAATATTACATATTATGTACA
AGTTTAATTTTAATTTCGATACCGTAAAATTTAAAACTAAATGATATTTT
CAAAGTTCAGAGAATTGATGAGAGTGGAAATTTGTNAAAGAAAAAATATT
ATGTACAAGTTTAATTTTAATTTCGATACCGTAAACTAAATGATATTTTG
AAAGTTCAGTGAATTGATGAGAGTGGAAATTTGTCTGATTCTGTAGGAAA
AGAAACTACAGGAAGACCTTTTCATAAATTACGTCACGAACATCACTTGC
CTCGTATTCAAACAATTACCATGGTCATTATGACCCTTGAGACATGAAGT
GATTTTTTGATGAATTAGGAATTAATCACCATGGCAATAATTTCAAAACA
AGGCAAGTGATGTTCCTAACGTAATTTATGAAAAGATCTATTGTTGGCGA
TTATTTTTTTTTAAGTAAGCAATTTGTAGCTACATAAGTACTGTGAACTT
TGAATTTAGACTGAAATCTCCATAGCACGAAGCTCTTTCACTAGAATTTC
TTCTTAAGTTGATCGAGTTGTTTGGGCCCTTCAATAAACAAACTCGAGAA
TAAATTGAGTGTTAGAGAGGACAAACACTGGTATCTCTCGGGTGTATCCG
AATAAGTGTATCCATAACCATCATGATTCAATAGCGTATA Coding sequence (CDS) from alignment at sc0000134:416431..421070- >TCONS_00011988 ID=TCONS_00011988|Name=TCONS_00011988|organism=Clytia hemisphaerica|type=CDS|length=1506bp|location=Sequence derived from alignment at sc0000134:416431..421070- (Clytia hemisphaerica) ATGATATTGAAACTACTCAGTCGTTTTGGATTCTTGATTTTTCTGGTGAC GTCATGGACCATCATTATCTGCACCACAATTCCTTTGCTCCCATTCAGCA TGACAATCCTCATAACTCGTAAACTAGAAGAAATCGTCTATCGAATCTTA TACAGAGCCTTACATTTCAAAACTGAGGAAACGCCCTGGTTAACTGATAC GCCCCGAAATCGTACCGACATCAACTGTCTATTAATGCTTGAAGGGAAAT TGGGTATTAAAAAATTCCAGGGTTTAATGGACCGAAAATTAGTTAAAGCA CGTAATACAAAAACAGGGAAGTTATTATATCCAAGAGTGACTGAATATGT TCATACAGGATACTTAAATTATTACTGGTTGGAAGAAACGAATTTCAAAC TTAAAGATCATGTTTACGAATGGAGTGAAAATCCATGCCGATCTAAAAAT CAGTTACAAGACTTAATATCCAAACTTGCTGAACGTCCACTTCGATCCTC AGACAATAAATCGCCATGGGAATTTGTTGTAGTTCATTGTAGAAATACAG ATGGGTTCATACAATCCGGAATTATAGTACGGATTTCACATTGTTTAGCT GATGGAACTTCTCTTATGTATTTTCTCATAAACCATTTGTGTGACGATTC CAACAATAATGGATACTTAGCTGGCCCAGAACATCAGATTTCCTTTACAC AAAAATCAATGATTTATCTAAAATCTTCAATTTACTACCCTTACAATGTG GCGAAAACCTTAGCTCCGCAATGGACGCGCCCGACATCGTTGAACTGTCC GGAAGCCTCCTTATCCGGAAAGAAACGTTATATTTACGCTCGACCAATTA ATCTGGAACTTATCAAAATTATCAAACGAAACTTAAATGTCACGATCAAT GATGTCATTTTGGGTTGCATAGCAACTAGCCTACATAACTTTTTCCGAAA AAAGAACGAAAAGGCGCCTCATAATTTGATCACGTGTATACCGTTAGATA CCAGGCTTTCACTTGAACAGGCTAAAGAATTCAGTAATAAAATAAACATT ACTATGCTTCCGCTACCCACATCAAGCGCCGATTCGATCAGAAATATTTT GGAAATTCACGATCGAATGAAGTCTAGGAAAGATTCTTTAGAAGGAATGA GTATGCGAATTGGGTTGCGTCTTTTAGCTGAAATGACACCGAACTGTGCT ATGCAGGAGATCATTCGATCATCTGCTAGTAATGCTGTAATGATTGTATC TAATGTCCAAGGGCCATCCCACGAGTTAATGCTTGCTGGAAATAAATTAA GTTCTTTAGTCTTCTGGCCACCCGGTAAGGATAGCATCGGGTCGTCGATT TCAATAATGAGTTATAATGGATTTATATACACTGGAGCACTGAGTGATAC GAATATTATGAAATATCCTGAAAAAATGATTGAAGATCTTCCAGCTATTA TTATGTCACTTGCTGAAAGCTTTACATCTAAGAAAAATGCATATTCATCA GATTGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
Feature Name | Unique Name | Species | Type |
TCONS_00011988-exon-sc0000134-1575043694:420978..421070 | TCONS_00011988-exon-sc0000134-1575043694:420978..421070 | Clytia hemisphaerica | exon |
TCONS_00011988-exon-sc0000134-1575043694:416431..420013 | TCONS_00011988-exon-sc0000134-1575043694:416431..420013 | Clytia hemisphaerica | exon |
TCONS_00011988-exon-sc0000134-1510915933:420978..421070 | TCONS_00011988-exon-sc0000134-1510915933:420978..421070 | Clytia hemisphaerica | exon |
TCONS_00011988-exon-sc0000134-1510915933:416431..420013 | TCONS_00011988-exon-sc0000134-1510915933:416431..420013 | Clytia hemisphaerica | exon |
TCONS_00011988-exon-sc0000134-1491911889:420978..421070 | TCONS_00011988-exon-sc0000134-1491911889:420978..421070 | Clytia hemisphaerica | exon |
TCONS_00011988-exon-sc0000134-1491911889:416431..420013 | TCONS_00011988-exon-sc0000134-1491911889:416431..420013 | Clytia hemisphaerica | exon |
Position
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
sc0000134 | supercontig | sc0000134:416431..421070 - |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
Term | Definition |
IPR004255 | O-acyltransferase_WSD1_N |
IPR009721 | O-acyltransferase_WSD1_C |
Vocabulary: Biological Process
Term | Definition |
GO:0045017 | glycerolipid biosynthetic process |
Vocabulary: Molecular Function
Term | Definition |
GO:0004144 | diacylglycerol O-acyltransferase activity |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category |
Term Accession |
Term Name |
biological_process |
GO:0045017 |
glycerolipid biosynthetic process |
molecular_function |
GO:0004144 |
diacylglycerol O-acyltransferase activity |
Blast
The following BLAST results are available for this feature:
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