TCONS_00011993 (transcript) - C. hemisphaerica

Overview
NameTCONS_00011993
Unique NameTCONS_00011993
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length680

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00011993 ID=TCONS_00011993|Name=TCONS_00011993|organism=Clytia hemisphaerica|type=transcript|length=680bp
TTTGCATTTGCTCATCAAGTTTAcagaaattgtttttatttgtcaAAACA
CTTTTGACAGACGTCTCTCTTTTGTCTGAAGACAGTTTTGAATACGTCAT
GAAAGAGTGAAAGGACAAGCTAAACCTGTTTTTGACGAACAGTTTGTACG
TCAAATTAGACGTAATTTACAAGATACTGAAAGTAGGGATATGAGGCTCA
TTATAAAAGCACTGCATTCGGTTTGGAAAAGTCAGAGTTAAACGGACAAA
CATTACTCAAACAACATTTGAATTGGAAGtacatatttttggaaaatggg
AAGCTGGATTTCATTCGATAAAGACCACGAATCAGTTGCGAAAGTCAAGC
AATATTGTGAATCAGTCGTTTTTGTGCAATTCTACGGACAGACGAATGAC
CTAAAGGGTTCCACTGATAACATCACTGGAAAACCAAAATCGAAGCTTGG
CCACTTGCTCAGTGAACTTGATAAAGAGGTTCGAAAGGCTTCGAAAATTG
AGGAATTAGAAATCACGGAATCAATGAGGAATATTTTAAGGAAAATGGCA
GAGATCAGAGTTTGCATGGCGGATTGTGAAACTGTCGAAGATTGTCATCA
AAAGCTGTTGAATGACGCCGAACGATTCCAAGCGATTTACCGAAAACGTG
GTCATGAATCGGAAGTTCTGGAAGAAAAAN
Run BLAST on NCBI

transcript from alignment at sc0000134:485292..486520-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00011993 ID=TCONS_00011993|Name=TCONS_00011993|organism=Clytia hemisphaerica|type=transcript|length=1229bp|location=Sequence derived from alignment at sc0000134:485292..486520- (Clytia hemisphaerica)
TTTGCATTTGCTCATCAAGTTTACAGAAATTGTTTTTATTTGTCAAAACA
CTTTTGACAGACGTCTCTCTTTTGTCTGAAGACAGTTTTGAATACGTCAT
GAAAGAGTGAAAGGACAAGCTAAACCTGTTTTTGACGAACAGTTTGTACG
TCAAATTAGACGTAATTTACAAGATACTGAAAGTAGGGATATGAGGCTCA
TTATAAAAGCACTGCATTCGGTTTGGAAAAGTCAGAGTTAAACGGACAAA
CATTACTCAAACAACATTTGAATTGGAAGTACATATTTTTGGAAAATGGG
AAGCTGGATTTCATTCGATAAAGACCACGAATCAGTTGCGAAAGTCAAGC
AATATTGTGAATCAGTCGTTTTTGTGCAATTCTACGGACAGACGAATGAC
CTAAAGGTATGTTTTCACTACTGTCCTTTCGTTTAACATAAAAAAGTAGC
TACCCTGTCACAACACTTTAAAACTCCGAAATATCTGCGTCTCCTCAGGG
TAATATTCTGACATCTGACCAGATCTGACAATATCATCATAGGCCATTTC
ACAGTCGAACTGAATCATGGTTAATCAGGAATTGTTGCGCTCTAATATTG
GCTAAACGGAAAAGTCTTTATAATTTTTCCAAACTTTGGACTAATAGTAA
GTCTTCATTGGTGCGCAGTTGTTCCGATTACCCATTGCGCCTTGCGAGTG
TGAAATGGCCTAATGATGCAAGGAAAGTGTGTGATTCAGCAAGATAAGAC
AATCACTCTCGTGCTTCTATTCAGGGTTCCACTGATAACATCACTGGAAA
ACCAAAATCGAAGCTTGGCCACTTGCTCAGTGAACTTGATAAAGAGGTTC
GAAAGGCTTCGAAAATTGAGGAATTAGAAATCACGGAATCAATGAGGAAT
ATTTTAAGGAAAATGGCAGAGATCAGAGTTTGCATGGCGGATTGTGAAAC
TGTCGAAGATTGTCATCAAAAGCTGTTGAATGACGCCGAACGATTCCAAG
CGATTTACCGAAAACGTGGTCGTAAGTCATTTTATTTTCTATGTTTTATC
AAGTATACATGATCAAAGTTAGATAAGGCTCTGTTTGAATTTATCAATCA
CCACTTTCCCGTGATAAAACTTCTGCGCTTTGGTTCATAAGTATTGATTC
TCCCTGTTTAACTTAGCTCACTTTATTTACATTTACAACAACCTTTTTTT
AGATGAATCGGAAGTTCTGGAAGAAAAAN
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_006729XLOC_006729Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00011993-exon-sc0000134-1575043694:486115..486520TCONS_00011993-exon-sc0000134-1575043694:486115..486520Clytia hemisphaericaexon
TCONS_00011993-exon-sc0000134-1575043694:485500..485746TCONS_00011993-exon-sc0000134-1575043694:485500..485746Clytia hemisphaericaexon
TCONS_00011993-exon-sc0000134-1575043694:485292..485318TCONS_00011993-exon-sc0000134-1575043694:485292..485318Clytia hemisphaericaexon
TCONS_00011993-exon-sc0000134-1510915933:486115..486520TCONS_00011993-exon-sc0000134-1510915933:486115..486520Clytia hemisphaericaexon
TCONS_00011993-exon-sc0000134-1510915933:485500..485746TCONS_00011993-exon-sc0000134-1510915933:485500..485746Clytia hemisphaericaexon
TCONS_00011993-exon-sc0000134-1510915933:485292..485318TCONS_00011993-exon-sc0000134-1510915933:485292..485318Clytia hemisphaericaexon
TCONS_00011993-exon-sc0000134-1491911889:486115..486520TCONS_00011993-exon-sc0000134-1491911889:486115..486520Clytia hemisphaericaexon
TCONS_00011993-exon-sc0000134-1491911889:485500..485746TCONS_00011993-exon-sc0000134-1491911889:485500..485746Clytia hemisphaericaexon
TCONS_00011993-exon-sc0000134-1491911889:485292..485318TCONS_00011993-exon-sc0000134-1491911889:485292..485318Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000134supercontigsc0000134:485292..486520 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0.343529	0	0.157637	0	0	0.18162	0	0.00845913	1.03254	0.287825	0.664301	41.7236	36.2358	40.2737	11.926	20.8631	87.4584	29.3488	40.9252	0.658874	0	4.86451	2.13258	22.3749	7.54082	56.6084	29.8233	1.86671	1.85408
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00011993 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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