TCONS_00011997 (transcript) - C. hemisphaerica

Overview


Name	TCONS_00011997
Unique Name	TCONS_00011997
Type	transcript
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	2607

Sequence

The following sequences are available for this feature:

transcript sequence
transcript from alignment at sc0000134:557677..560283-

transcript sequence

>TCONS_00011997 ID=TCONS_00011997|Name=TCONS_00011997|organism=Clytia hemisphaerica|type=transcript|length=2607bp
CTTTTAagattcaaaatgaatttgtcCAATCAGCTTTCATTGCTAGATTT
TCAAATTCTGTTCATTATtcgttgatattttttttagtCTGTTGTCTTAT
ATATTTTTAGTTAAGCGAGGTAACAGCATGGAGGGGAGTTTTTTTGTTAG
AATAAATTTGACATAAGTTTAATTTTTaccattaatttttattttgctct
TTAGATTAGATAATATTACCGTAAAAAATTCAGCAAATTACTATTATGGA
AATAAAGAAAGACGCCAATTAACGACATCATTGGCTCGCAATATCTTGGt
tggaaaaagaaatttggtTGTATCGATATTTTTAGTTCCTTGATGAGAAT
TATACAAATTACTAGCTAATTATCAAATTACTAGCTAATGTTATTGACTG
AAGACAATGTAAAAATCGCCCAAAAATCGACAAGATGACTGAGATGACGT
AGTGAACCACCGACTTACAGAGAAAGCTGTGcttgaaaaaattgcaaaaa
atccaGATGAACTGACTGACTGACAAACACAATGGAGAATGGAAGTTATG
TCAGTTGCTGAACGATCAAACGATACTGAACTACAGGAGCTATTCATGGA
TTCATCTTTTCCTAAAGGTTCTCTGTGGATGTCGTTAGAAATTTTAAATC
TATGTAAACATGTAAAACACGTTAATGGTTGGGATATATTTTCTGGACAT
GTATTAAAATTGCTCAAGTACTGTATTTGTtactttattttgataaaatc
gtTCTTCAATATAATTGTATTTTAGATATTATAGAAACAAAGCAAGAAAC
CTATATTCACATTGCATTTCAAACGACAACGTGCTTTAAAGTAGAACCCA
GATCCATTTTCGACCATTTCCTAATTTAGCCAGTTTAAGGACAATTTTGG
ACAAGCTATTAGTTCTACATTGGGAAGTGCTTTTTTACAAAGTTTGGGAA
GAGTAAAAAATCTAGAACCATTTTCGACCATTCCCTAATTTAAACAGTTT
CAGGGCAAGTTTGGATAAGCTAAGTTCTACATTGGGAAGTGCTTTTTTAC
AAAGTTTGGGAAAAGTAGTATCTAGATCCGTTTTCGACCATTCTTTACTT
CAAACAGTTTCAGGACAAGTTTTGATAAGCTAAGTTCTACATTGGGAAGT
GCTTTTATACAAGGTTTGGGAAATGTTAAATCCAGATCCATTTTCGGCCA
TACCCTAATTCAAACACAATTCCAGATATGGGGGAAAACGTAATATTTTA
TTGGGAAATGATGTTTCACAAAGTTCGGCAAACGTAACATCTGGACCCGT
TTTTGCTGGTTCCCAGCGTCAATCTAGGCTAACAAAAGGTCtggacaaaa
ataaatcagttaggtttttgtcatttttggatTGTGAAACTGTGACTCAC
AAGCttcagaaattgaaattcccaACCAGGGTATCCCAATATCCGCATCC
AGATTTAAAGTTTGTGAAATTGCATTTGACAACCTTGTGAAGAGTTGCAG
GATCCCAACCTTGTGATTAGTTTGGGAAACCCACCTATTCCCAAATCTGG
AAACGACATTTCACAAAGCTTGTGATCTATTAATTATTTCCTGTGATGAT
gtgcaaataatgtgtatttcaacagccaatatgcatgatttgaccgtaaa
agtcacaaaatcgtgaaaatattgccacccaataatgccacccgcgaaat
taagtccccgtgtaatttttgaatttcgcggaaaggcccaaccgcgaaat
ttaatccccgcgaaagtttatcccgcgaaagtttatcccattaaagtaag
tGTAAATAGAcaaattatttagaatttttagagGTGTACTGTTGTAGTTT
TCCTGTACATATGCTGCACTTTTTTTGTGACTTTCATTTGGTACATTGCA
ATGCGAATTCAATTATTTATGAATGATGGTGTACTTTTGATgatatttca
tttaaaaacgATAGAcgatttattttaattttacattttactttTCATTG
GTTTTATTTAGACTTACCactatcaaaatattttggttacATGGTATAGT
AATTGTTTTTGCTGTTTATATTTCATTCTGGATTGTGATTTTACTGATTC
TTCAACAAGTACCTGAAAAAAATGGATAAGGTTGGCTTACCCATTCTTAT
ACCTAAAGGAATCTGACTCTAATGAATTGTTAAGCTAGACTTGTAAGAAT
TCGTTACCAagggtacatgtttttttataagcaagtgtctactCCTATAT
CAGGCTCTCATTATGCTTATAGAATGCTTATTGTTCTTAAATAATAGAGC
CATTGTTAAGGTGCCAAAAACCGAGCCTGCAtttgcttataaacgttatg
cttatagaaaaaatgtATGGATTATTGTCGGTATTGTTGAACTAAATTAC
TTTACAAGTACcactgttttttttcattttcgtttcattttcgattCATT
TTTCTGAGAAACATTTCTTTAAGATTTATAATTTGTAAATTACTATATTA
AAGTAGAGATATATTATATGAGTGATACTGATAGAAATTATTAACATCAT
CATTTGAGATGAAAAGAAGAGAATATATTGAAAAATACTAATTGAAATTA
ATAACTG

Run BLAST on NCBI

transcript from alignment at sc0000134:557677..560283-

Legend: exon

Hold the cursor over a type above to highlight its positions in the sequence below.

>TCONS_00011997 ID=TCONS_00011997|Name=TCONS_00011997|organism=Clytia hemisphaerica|type=transcript|length=2607bp|location=Sequence derived from alignment at sc0000134:557677..560283- (Clytia hemisphaerica)
CTTTTAAGATTCAAAATGAATTTGTCCAATCAGCTTTCATTGCTAGATTT
TCAAATTCTGTTCATTATTCGTTGATATTTTTTTTAGTCTGTTGTCTTAT
ATATTTTTAGTTAAGCGAGGTAACAGCATGGAGGGGAGTTTTTTTGTTAG
AATAAATTTGACATAAGTTTAATTTTTACCATTAATTTTTATTTTGCTCT
TTAGATTAGATAATATTACCGTAAAAAATTCAGCAAATTACTATTATGGA
AATAAAGAAAGACGCCAATTAACGACATCATTGGCTCGCAATATCTTGGT
TGGAAAAAGAAATTTGGTTGTATCGATATTTTTAGTTCCTTGATGAGAAT
TATACAAATTACTAGCTAATTATCAAATTACTAGCTAATGTTATTGACTG
AAGACAATGTAAAAATCGCCCAAAAATCGACAAGATGACTGAGATGACGT
AGTGAACCACCGACTTACAGAGAAAGCTGTGCTTGAAAAAATTGCAAAAA
ATCCAGATGAACTGACTGACTGACAAACACAATGGAGAATGGAAGTTATG
TCAGTTGCTGAACGATCAAACGATACTGAACTACAGGAGCTATTCATGGA
TTCATCTTTTCCTAAAGGTTCTCTGTGGATGTCGTTAGAAATTTTAAATC
TATGTAAACATGTAAAACACGTTAATGGTTGGGATATATTTTCTGGACAT
GTATTAAAATTGCTCAAGTACTGTATTTGTTACTTTATTTTGATAAAATC
GTTCTTCAATATAATTGTATTTTAGATATTATAGAAACAAAGCAAGAAAC
CTATATTCACATTGCATTTCAAACGACAACGTGCTTTAAAGTAGAACCCA
GATCCATTTTCGACCATTTCCTAATTTAGCCAGTTTAAGGACAATTTTGG
ACAAGCTATTAGTTCTACATTGGGAAGTGCTTTTTTACAAAGTTTGGGAA
GAGTAAAAAATCTAGAACCATTTTCGACCATTCCCTAATTTAAACAGTTT
CAGGGCAAGTTTGGATAAGCTAAGTTCTACATTGGGAAGTGCTTTTTTAC
AAAGTTTGGGAAAAGTAGTATCTAGATCCGTTTTCGACCATTCTTTACTT
CAAACAGTTTCAGGACAAGTTTTGATAAGCTAAGTTCTACATTGGGAAGT
GCTTTTATACAAGGTTTGGGAAATGTTAAATCCAGATCCATTTTCGGCCA
TACCCTAATTCAAACACAATTCCAGATATGGGGGAAAACGTAATATTTTA
TTGGGAAATGATGTTTCACAAAGTTCGGCAAACGTAACATCTGGACCCGT
TTTTGCTGGTTCCCAGCGTCAATCTAGGCTAACAAAAGGTCTGGACAAAA
ATAAATCAGTTAGGTTTTTGTCATTTTTGGATTGTGAAACTGTGACTCAC
AAGCTTCAGAAATTGAAATTCCCAACCAGGGTATCCCAATATCCGCATCC
AGATTTAAAGTTTGTGAAATTGCATTTGACAACCTTGTGAAGAGTTGCAG
GATCCCAACCTTGTGATTAGTTTGGGAAACCCACCTATTCCCAAATCTGG
AAACGACATTTCACAAAGCTTGTGATCTATTAATTATTTCCTGTGATGAT
GTGCAAATAATGTGTATTTCAACAGCCAATATGCATGATTTGACCGTAAA
AGTCACAAAATCGTGAAAATATTGCCACCCAATAATGCCACCCGCGAAAT
TAAGTCCCCGTGTAATTTTTGAATTTCGCGGAAAGGCCCAACCGCGAAAT
TTAATCCCCGCGAAAGTTTATCCCGCGAAAGTTTATCCCATTAAAGTAAG
TGTAAATAGACAAATTATTTAGAATTTTTAGAGGTGTACTGTTGTAGTTT
TCCTGTACATATGCTGCACTTTTTTTGTGACTTTCATTTGGTACATTGCA
ATGCGAATTCAATTATTTATGAATGATGGTGTACTTTTGATGATATTTCA
TTTAAAAACGATAGACGATTTATTTTAATTTTACATTTTACTTTTCATTG
GTTTTATTTAGACTTACCACTATCAAAATATTTTGGTTACATGGTATAGT
AATTGTTTTTGCTGTTTATATTTCATTCTGGATTGTGATTTTACTGATTC
TTCAACAAGTACCTGAAAAAAATGGATAAGGTTGGCTTACCCATTCTTAT
ACCTAAAGGAATCTGACTCTAATGAATTGTTAAGCTAGACTTGTAAGAAT
TCGTTACCAAGGGTACATGTTTTTTTATAAGCAAGTGTCTACTCCTATAT
CAGGCTCTCATTATGCTTATAGAATGCTTATTGTTCTTAAATAATAGAGC
CATTGTTAAGGTGCCAAAAACCGAGCCTGCATTTGCTTATAAACGTTATG
CTTATAGAAAAAATGTATGGATTATTGTCGGTATTGTTGAACTAAATTAC
TTTACAAGTACCACTGTTTTTTTTCATTTTCGTTTCATTTTCGATTCATT
TTTCTGAGAAACATTTCTTTAAGATTTATAATTTGTAAATTACTATATTA
AAGTAGAGATATATTATATGAGTGATACTGATAGAAATTATTAACATCAT
CATTTGAGATGAAAAGAAGAGAATATATTGAAAAATACTAATTGAAATTA
ATAACTG

Gene-mRNA-Prot

This transcript is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
XLOC_006732	XLOC_006732	Clytia hemisphaerica	gene

The following exon feature(s) are a part of this transcript:


Feature Name	Unique Name	Species	Type
TCONS_00011997-exon-sc0000134-1575043694:557677..560283	TCONS_00011997-exon-sc0000134-1575043694:557677..560283	Clytia hemisphaerica	exon
TCONS_00011997-exon-sc0000134-1510915933:557677..560283	TCONS_00011997-exon-sc0000134-1510915933:557677..560283	Clytia hemisphaerica	exon
TCONS_00011997-exon-sc0000134-1491911889:557677..560283	TCONS_00011997-exon-sc0000134-1491911889:557677..560283	Clytia hemisphaerica	exon

Position

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
sc0000134	supercontig	sc0000134:557677..560283 -

Expression

Values :

    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.120458	0.134698	0.0917186	0.0890843	8.25693	5.11175	4.25617	3.51024	1.28731	0.629516	0.789466	0.807541	0.539225	0.529537	0.695092	0.776732	0.845003	0.54175	0.494817	0.587247	3.08692	2.7983	1.57583	1.73008	0.508276	0.613316	0.571961	0.848325	1.15504	0.976666

Blast

The following BLAST results are available for this feature:

BLAST of TCONS_00011997 vs. Swiss-Prot (Human)

BLAST of TCONS_00011997 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0


Match Name	E-value	Identity	Description

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TCONS_00011997 (transcript) - C. hemisphaerica