TCONS_00011998 (transcript) - C. hemisphaerica

Overview


Name	TCONS_00011998
Unique Name	TCONS_00011998
Type	transcript
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	3719

Sequence

The following sequences are available for this feature:

transcript sequence
transcript from alignment at sc0000134:557677..561762-

transcript sequence

>TCONS_00011998 ID=TCONS_00011998|Name=TCONS_00011998|organism=Clytia hemisphaerica|type=transcript|length=3719bp
ACAAGCTGTGAAaagtagaaaaagtaatgagttTTGGTACAACAGTCCAG
TCTTTGTGGCTCAAGCAGAGTCCAGTATACTACGACTACATAGTCGTTCG
AGTTATGGGGCGTTCAAGTTTTAGAGAAGAAAAACAGCCTAAGATTTTCT
caaaggaacaagaaaaactgTTCGAGTGATACATTGTGAGACAtcaggag
acattcgagttatggagagtcGACCTGGTCGACTGTAGTAGTATACTGGA
ACTAATGAATACGAAAAAAGACACTCAGTTTGAAATCAGCCGGCGAAGCG
ACCTTTTTTTCTGTTGTGTTTTGAGAgtatgtttcagctagaaattttga
tctgttctgataagatcttcgaaaattaatcagctagaaataatggtGTG
TTCTGACGAGAGAGGGGTATAACCAAGGTCATcaaacgtgttcttgttgt
cttggtaaccctagaaagcttcagaacacatcttttaagtaGACAGGGGG
TGTAATATAGATAAAATTTATGTGATCTTGTTGCctggtaaccctagaaa
gtttcagaacacatctttcgtggaaaaaatccccaaaaaatcaaatatct
tacaagtatatcaaaaagtttagggagacaaatagcNtttcagaacacat
ctttcgtggaaaaaatccccaaaaaatcaaatatcttacaagtatatcaa
aaagtttagggagacaaatagcGCGATAAAGGTTttctagaaatcagaac
acatcatttgtataagaaAATCGAAGTTCATAAcatgtggtctcctagaa
gataagaacacatatttctgaAAAAACTCTCCGCCGGCTGCATATGTCAA
TTGTTGTGTATAAGTCACTATAAGTCGTATAAGTGACAGACTAGCTCACC
AACCTATACTATTTTCAGctacaaaacaataaaatacttggatttgtttg
ataaattacAAGTTGACTTACTTTGTTGATTTGAAGTGTTGCTTTTTGAT
AGCCAGCAGTATCTTGCACTTTATTTCTTGCTTGATTCCtcgatattttt
taagttttgaaagaaaacgaaTTTTCGCGCTATCAAAAATACAactgtaa
aactatgaaaaagtcTTCCATATAAGGAAATTTGCAAACATGGAATAACG
GACAAAATCAACGcgaaagaaatcaaatttttctcttCAATACTTATATG
TGTGGGAAAGGTGTAGAGGTGTGAAAAATACTTGTGTGTGATTTACACAT
TTCTATTGCAAAGGAAATAATGGAAAGACAAATTAAACATCACAAGAAAT
ATAAACTTCTTTATCGATTAGATAATATTACCGTAAAAAATTCAGCAAAT
TACTATTATGGAAATAAAGAAAGACGCCAATTAACGACATCATTGGCTCG
CAATATCTTGGttggaaaaagaaatttggtTGTATCGATATTTTTAGTTC
CTTGATGAGAATTATACAAATTACTAGCTAATTATCAAATTACTAGCTAA
TGTTATTGACTGAAGACAATGTAAAAATCGCCCAAAAATCGACAAGATGA
CTGAGATGACGTAGTGAACCACCGACTTACAGAGAAAGCTGTGcttgaaa
aaattgcaaaaaatccaGATGAACTGACTGACTGACAAACACAATGGAGA
ATGGAAGTTATGTCAGTTGCTGAACGATCAAACGATACTGAACTACAGGA
GCTATTCATGGATTCATCTTTTCCTAAAGGTTCTCTGTGGATGTCGTTAG
AAATTTTAAATCTATGTAAACATGTAAAACACGTTAATGGTTGGGATATA
TTTTCTGGACATGTATTAAAATTGCTCAAGTACTGTATTTGTtactttat
tttgataaaatcgtTCTTCAATATAATTGTATTTTAGATATTATAGAAAC
AAAGCAAGAAACCTATATTCACATTGCATTTCAAACGACAACGTGCTTTA
AAGTAGAACCCAGATCCATTTTCGACCATTTCCTAATTTAGCCAGTTTAA
GGACAATTTTGGACAAGCTATTAGTTCTACATTGGGAAGTGCTTTTTTAC
AAAGTTTGGGAAGAGTAAAAAATCTAGAACCATTTTCGACCATTCCCTAA
TTTAAACAGTTTCAGGGCAAGTTTGGATAAGCTAAGTTCTACATTGGGAA
GTGCTTTTTTACAAAGTTTGGGAAAAGTAGTATCTAGATCCGTTTTCGAC
CATTCTTTACTTCAAACAGTTTCAGGACAAGTTTTGATAAGCTAAGTTCT
ACATTGGGAAGTGCTTTTATACAAGGTTTGGGAAATGTTAAATCCAGATC
CATTTTCGGCCATACCCTAATTCAAACACAATTCCAGATATGGGGGAAAA
CGTAATATTTTATTGGGAAATGATGTTTCACAAAGTTCGGCAAACGTAAC
ATCTGGACCCGTTTTTGCTGGTTCCCAGCGTCAATCTAGGCTAACAAAAG
GTCtggacaaaaataaatcagttaggtttttgtcatttttggatTGTGAA
ACTGTGACTCACAAGCttcagaaattgaaattcccaACCAGGGTATCCCA
ATATCCGCATCCAGATTTAAAGTTTGTGAAATTGCATTTGACAACCTTGT
GAAGAGTTGCAGGATCCCAACCTTGTGATTAGTTTGGGAAACCCACCTAT
TCCCAAATCTGGAAACGACATTTCACAAAGCTTGTGATCTATTAATTATT
TCCTGTGATGATgtgcaaataatgtgtatttcaacagccaatatgcatga
tttgaccgtaaaagtcacaaaatcgtgaaaatattgccacccaataatgc
cacccgcgaaattaagtccccgtgtaatttttgaatttcgcggaaaggcc
caaccgcgaaatttaatccccgcgaaagtttatcccgcgaaagtttatcc
cattaaagtaagtGTAAATAGAcaaattatttagaatttttagagGTGTA
CTGTTGTAGTTTTCCTGTACATATGCTGCACTTTTTTTGTGACTTTCATT
TGGTACATTGCAATGCGAATTCAATTATTTATGAATGATGGTGTACTTTT
GATgatatttcatttaaaaacgATAGAcgatttattttaattttacattt
tactttTCATTGGTTTTATTTAGACTTACCactatcaaaatattttggtt
acATGGTATAGTAATTGTTTTTGCTGTTTATATTTCATTCTGGATTGTGA
TTTTACTGATTCTTCAACAAGTACCTGAAAAAAATGGATAAGGTTGGCTT
ACCCATTCTTATACCTAAAGGAATCTGACTCTAATGAATTGTTAAGCTAG
ACTTGTAAGAATTCGTTACCAagggtacatgtttttttataagcaagtgt
ctactCCTATATCAGGCTCTCATTATGCTTATAGAATGCTTATTGTTCTT
AAATAATAGAGCCATTGTTAAGGTGCCAAAAACCGAGCCTGCAtttgctt
ataaacgttatgcttatagaaaaaatgtATGGATTATTGTCGGTATTGTT
GAACTAAATTACTTTACAAGTACcactgttttttttcattttcgtttcat
tttcgattCATTTTTCTGAGAAACATTTCTTTAAGATTTATAATTTGTAA
ATTACTATATTAAAGTAGAGATATATTATATGAGTGATACTGATAGAAAT
TATTAACATCATCATTTGAGATGAAAAGAAGAGAATATATTGAAAAATAC
TAATTGAAATTAATAACTG

Run BLAST on NCBI

transcript from alignment at sc0000134:557677..561762-

Legend: exon

Hold the cursor over a type above to highlight its positions in the sequence below.

>TCONS_00011998 ID=TCONS_00011998|Name=TCONS_00011998|organism=Clytia hemisphaerica|type=transcript|length=4086bp|location=Sequence derived from alignment at sc0000134:557677..561762- (Clytia hemisphaerica)
ACAAGCTGTGAAAAGTAGAAAAAGTAATGAGTTTTGGTACAACAGTCCAG
TCTTTGTGGCTCAAGCAGAGTCCAGTATACTACGACTACATAGTCGTTCG
AGTTATGGGGCGTTCAAGTTTTAGAGAAGAAAAACAGCCTAAGATTTTCT
CAAAGGAACAAGAAAAACTGTTCGAGTGATACATTGTGAGACATCAGGAG
ACATTCGAGTTATGGAGAGTCGACCTGGTCGACTGTAGTAGTATACTGGA
ACTAATGAATACGAAAAAAGACACTCAGTTTGAAATCAGCCGGCGAAGCG
ACCTTTTTTTCTGTTGTGTTTTGAGAGTATGTTTCAGCTAGAAATTTTGA
TCTGTTCTGATAAGATCTTCGAAAATTAATCAGCTAGAAATAATGGTGTG
TTCTGACGAGAGAGGGGTATAACCAAGGTCATCAAACGTGTTCTTGTTGT
CTTGGTAACCCTAGAAAGCTTCAGAACACATCTTTTAAGTAGACAGGGGG
TGTAATATAGATAAAATTTATGTGATCTTGTTGCCTGGTAACCCTAGAAA
GTTTCAGAACACATCTTTCGTGGAAAAAATCCCCAAAAAATCAAATATCT
TACAAGTATATCAAAAAGTTTAGGGAGACAAATAGCNTTTCAGAACACAT
CTTTCGTGGAAAAAATCCCCAAAAAATCAAATATCTTACAAGTATATCAA
AAAGTTTAGGGAGACAAATAGCGCGATAAAGGTTTTCTAGAAATCAGAAC
ACATCATTTGTATAAGAAAATCGAAGTTCATAACATGTGGTCTCCTAGAA
GATAAGAACACATATTTCTGAAAAAACTCTCCGCCGGCTGCATATGTCAA
TTGTTGTGTATAAGTCACTATAAGTCGTATAAGTGACAGACTAGCTCACC
AACCTATACTATTTTCAGCTACAAAACAATAAAATACTTGGATTTGTTTG
ATAAATTACAAGTTGACTTACTTTGTTGATTTGAAGTGTTGCTTTTTGAT
AGCCAGCAGTATCTTGCACTTTATTTCTTGCTTGATTCCTCGATATTTTT
TAAGTTTTGAAAGAAAACGAATTTTCGCGCTATCAAAAATACAACTGTAA
AACTATGAAAAAGTCTTCCATATAAGGAAATTTGCAAACATGGAATAACG
GACAAAATCAACGCGAAAGAAATCAAATTTTTCTCTTCAATACTTATATG
TGTGGGAAAGGTGTAGAGGTGTGAAAAATACTTGTGTGTGATTTACACAT
TTCTATTGCAAAGGAAATAATGGAAAGACAAATTAAACATCACAAGAAAT
ATAAACTTCTTTATCGGTAAGTTTTATTACTTTGATTTCAATTTTATGGA
TTTTAAAATTAAAAAAGAAATTTTTCCATACCAAATTTGATAGCAAAATT
TCATTTCATAAGATTTTTATAAGAAAAATATATGAAGAGAGAAATTTTCG
ATTACGTAATGAAAATCTACTCCAATCAGCTTTTAAGATTCAAAATGAAT
TTGTCCAATCAGCTTTCATTGCTAGATTTTCAAATTCTGTTCATTATTCG
TTGATATTTTTTTTAGTCTGTTGTCTTATATATTTTTAGTTAAGCGAGGT
AACAGCATGGAGGGGAGTTTTTTTGTTAGAATAAATTTGACATAAGTTTA
ATTTTTACCATTAATTTTTATTTTGCTCTTTAGATTAGATAATATTACCG
TAAAAAATTCAGCAAATTACTATTATGGAAATAAAGAAAGACGCCAATTA
ACGACATCATTGGCTCGCAATATCTTGGTTGGAAAAAGAAATTTGGTTGT
ATCGATATTTTTAGTTCCTTGATGAGAATTATACAAATTACTAGCTAATT
ATCAAATTACTAGCTAATGTTATTGACTGAAGACAATGTAAAAATCGCCC
AAAAATCGACAAGATGACTGAGATGACGTAGTGAACCACCGACTTACAGA
GAAAGCTGTGCTTGAAAAAATTGCAAAAAATCCAGATGAACTGACTGACT
GACAAACACAATGGAGAATGGAAGTTATGTCAGTTGCTGAACGATCAAAC
GATACTGAACTACAGGAGCTATTCATGGATTCATCTTTTCCTAAAGGTTC
TCTGTGGATGTCGTTAGAAATTTTAAATCTATGTAAACATGTAAAACACG
TTAATGGTTGGGATATATTTTCTGGACATGTATTAAAATTGCTCAAGTAC
TGTATTTGTTACTTTATTTTGATAAAATCGTTCTTCAATATAATTGTATT
TTAGATATTATAGAAACAAAGCAAGAAACCTATATTCACATTGCATTTCA
AACGACAACGTGCTTTAAAGTAGAACCCAGATCCATTTTCGACCATTTCC
TAATTTAGCCAGTTTAAGGACAATTTTGGACAAGCTATTAGTTCTACATT
GGGAAGTGCTTTTTTACAAAGTTTGGGAAGAGTAAAAAATCTAGAACCAT
TTTCGACCATTCCCTAATTTAAACAGTTTCAGGGCAAGTTTGGATAAGCT
AAGTTCTACATTGGGAAGTGCTTTTTTACAAAGTTTGGGAAAAGTAGTAT
CTAGATCCGTTTTCGACCATTCTTTACTTCAAACAGTTTCAGGACAAGTT
TTGATAAGCTAAGTTCTACATTGGGAAGTGCTTTTATACAAGGTTTGGGA
AATGTTAAATCCAGATCCATTTTCGGCCATACCCTAATTCAAACACAATT
CCAGATATGGGGGAAAACGTAATATTTTATTGGGAAATGATGTTTCACAA
AGTTCGGCAAACGTAACATCTGGACCCGTTTTTGCTGGTTCCCAGCGTCA
ATCTAGGCTAACAAAAGGTCTGGACAAAAATAAATCAGTTAGGTTTTTGT
CATTTTTGGATTGTGAAACTGTGACTCACAAGCTTCAGAAATTGAAATTC
CCAACCAGGGTATCCCAATATCCGCATCCAGATTTAAAGTTTGTGAAATT
GCATTTGACAACCTTGTGAAGAGTTGCAGGATCCCAACCTTGTGATTAGT
TTGGGAAACCCACCTATTCCCAAATCTGGAAACGACATTTCACAAAGCTT
GTGATCTATTAATTATTTCCTGTGATGATGTGCAAATAATGTGTATTTCA
ACAGCCAATATGCATGATTTGACCGTAAAAGTCACAAAATCGTGAAAATA
TTGCCACCCAATAATGCCACCCGCGAAATTAAGTCCCCGTGTAATTTTTG
AATTTCGCGGAAAGGCCCAACCGCGAAATTTAATCCCCGCGAAAGTTTAT
CCCGCGAAAGTTTATCCCATTAAAGTAAGTGTAAATAGACAAATTATTTA
GAATTTTTAGAGGTGTACTGTTGTAGTTTTCCTGTACATATGCTGCACTT
TTTTTGTGACTTTCATTTGGTACATTGCAATGCGAATTCAATTATTTATG
AATGATGGTGTACTTTTGATGATATTTCATTTAAAAACGATAGACGATTT
ATTTTAATTTTACATTTTACTTTTCATTGGTTTTATTTAGACTTACCACT
ATCAAAATATTTTGGTTACATGGTATAGTAATTGTTTTTGCTGTTTATAT
TTCATTCTGGATTGTGATTTTACTGATTCTTCAACAAGTACCTGAAAAAA
ATGGATAAGGTTGGCTTACCCATTCTTATACCTAAAGGAATCTGACTCTA
ATGAATTGTTAAGCTAGACTTGTAAGAATTCGTTACCAAGGGTACATGTT
TTTTTATAAGCAAGTGTCTACTCCTATATCAGGCTCTCATTATGCTTATA
GAATGCTTATTGTTCTTAAATAATAGAGCCATTGTTAAGGTGCCAAAAAC
CGAGCCTGCATTTGCTTATAAACGTTATGCTTATAGAAAAAATGTATGGA
TTATTGTCGGTATTGTTGAACTAAATTACTTTACAAGTACCACTGTTTTT
TTTCATTTTCGTTTCATTTTCGATTCATTTTTCTGAGAAACATTTCTTTA
AGATTTATAATTTGTAAATTACTATATTAAAGTAGAGATATATTATATGA
GTGATACTGATAGAAATTATTAACATCATCATTTGAGATGAAAAGAAGAG
AATATATTGAAAAATACTAATTGAAATTAATAACTG

Gene-mRNA-Prot

This transcript is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
XLOC_006732	XLOC_006732	Clytia hemisphaerica	gene

The following exon feature(s) are a part of this transcript:


Feature Name	Unique Name	Species	Type
TCONS_00011998-exon-sc0000134-1575043694:560447..561762	TCONS_00011998-exon-sc0000134-1575043694:560447..561762	Clytia hemisphaerica	exon
TCONS_00011998-exon-sc0000134-1575043694:557677..560079	TCONS_00011998-exon-sc0000134-1575043694:557677..560079	Clytia hemisphaerica	exon
TCONS_00011998-exon-sc0000134-1510915933:560447..561762	TCONS_00011998-exon-sc0000134-1510915933:560447..561762	Clytia hemisphaerica	exon
TCONS_00011998-exon-sc0000134-1510915933:557677..560079	TCONS_00011998-exon-sc0000134-1510915933:557677..560079	Clytia hemisphaerica	exon
TCONS_00011998-exon-sc0000134-1491911889:560447..561762	TCONS_00011998-exon-sc0000134-1491911889:560447..561762	Clytia hemisphaerica	exon
TCONS_00011998-exon-sc0000134-1491911889:557677..560079	TCONS_00011998-exon-sc0000134-1491911889:557677..560079	Clytia hemisphaerica	exon

Position

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
sc0000134	supercontig	sc0000134:557677..561762 -

Expression

Values :

    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.468087	0.351099	0.309383	0.323935	1.63108	1.30037	1.71366	1.94116	1.54854	1.96583	2.051	1.47956	0.962941	0.885937	0.385428	0.22005	0.47844	0.518673	0.403479	0.430515	0.741069	1.30114	0.371817	0.358811	1.62265	2.57476	0.48464	0.473692	0.336304	0.451909

Blast

The following BLAST results are available for this feature:

BLAST of TCONS_00011998 vs. Swiss-Prot (Human)

BLAST of TCONS_00011998 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0


Match Name	E-value	Identity	Description

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TCONS_00011998 (transcript) - C. hemisphaerica