TCONS_00012025 (transcript) - C. hemisphaerica

Overview
NameTCONS_00012025
Unique NameTCONS_00012025
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length607

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00012025 ID=TCONS_00012025|Name=TCONS_00012025|organism=Clytia hemisphaerica|type=transcript|length=607bp
TTCGGATGCTGATTGTTCTACGTTTACGGACCTATCGGAGCCACCTTGAT
GTCTTCTGCCTGCTCACTCCCAGTAGAGTAGGTACTTGAAAGTAAAGTTC
AACAAACAGAATGACAACACTTTTTCGGAATTTCTGGAGGATAGTTCAAT
CACCATTATATCAAAGACAAAACAATCTTCTTTTACCAAAGAACTGTCTC
TTTACCACGCCATCTTCCCTTGGAGTCAGATTACCACCAAAAGATGCtga
caaaaagaagaagaagaatccgTTGGTTGTTGCCGAATTAAAGAATGATA
CAAATACAGAATTTCATGAACTACCCATAGTCCTCATCAAGGCTACTTTT
AACAATACCTTAGTCTACTTGACTGACCATAAAGGAACTATGGCAACGTG
GACATCAGCTGGTATAGAAGGATTTAAGAACGCCAAACGTGGAACCAATT
ATGCTGGTAAAGTTGCTGGTGAAAGCATGGCCAAGGTAAAACTTGCTTTC
TCAATTCAAACTTTATTGTTTCAGCATGACTCAAAAAAAATGTCCGATCA
AGCTGTTTTTTtggaatgaaaattttgatttttgggactGATAAGTAGCA
ATTATTT
Run BLAST on NCBI

protein sequence of TCONS_00012025-protein

>TCONS_00012025-protein ID=TCONS_00012025-protein|Name=TCONS_00012025-protein|organism=Clytia hemisphaerica|type=polypeptide|length=152bp
MTTLFRNFWRIVQSPLYQRQNNLLLPKNCLFTTPSSLGVRLPPKDADKKK
KKNPLVVAELKNDTNTEFHELPIVLIKATFNNTLVYLTDHKGTMATWTSA
GIEGFKNAKRGTNYAGKVAGESMAKVKLAFSIQTLLFQHDSKKMSDQAVF
LE
Run BLAST on NCBI

transcript from alignment at sc0000136:175339..179361+

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00012025 ID=TCONS_00012025|Name=TCONS_00012025|organism=Clytia hemisphaerica|type=transcript|length=4023bp|location=Sequence derived from alignment at sc0000136:175339..179361+ (Clytia hemisphaerica)
TTCGGATGCTGATTGTTCTACGTTTACGGACCTATCGGAGCCACCTTGAT
GTCTTCTGCCTGCTCACTCCCAGTAGAGTAGGTACTTGGTAAgctttttc
gtattttttaaatctaaaatgCTACTGTTGCAAAGGGTCTTTACGGGGTG
TAATATTTCATTTGATTAtttcaggccatttttcatgcccttttagcgtc
aggtcatcggacgctgcccctccttAAATCACTAACATTCTGgcaaaaac
agcctttttagctgaaaaacacaagaaaaagtgccctttttggccaccaa
cggacgctgTCCTGCCTTTTTTAAATATAGCCTGTATTTTTTCCCTTACT
ACCATAAGCACAACTTTGGTAggcagttgggtgtttaagataaagaCGGC
AATTATTGGATGCCGAAAATGGCAATTTTTacgtcaattttttcaacgat
gaaatgctgaatcagcaaaatgtgttgtccttttaagggcaaagataTCA
GAcgtgtttgaaaatagtaaaattacATCGAGAAGAAGGCTTTTCGGAtt
ttttaaagtgattttttcaatttttcattgttccatagcatgaaaagttc
taaaataatatgttaaaagatcctgcatcgatgccgaaacacagccagaa
agagataacaaacccccattgtaaatttgtttacatatgactcgattttg
ctatctgcatttccaacgaAAACgtacaaaaaccagttgaaaacaaaact
aggaccctgccgacgcaccggacttaacaaacaccggacacgcgaaagtc
cggtgtaaaatgagaatgttttttaccaccggacaatccctacaccggac
ttaaggaagtcggatgtccggtgttggagaaggatatttttttccaccgg
acatgaccagtccgttgcgtccggtgtttctttattttttgtttcgtaAA
TGTCTGGCGttcaaaattccctgtatgcaacaccggacttattgcgtccg
gtgtagcgaaaggatactttttgccaccggacaaatacaccagacagtcc
ggtgcgtcggcagggtcctacaaaactaaacgaggcacagtgggcctact
tatctCGAGGGTGTCAAATATAGCATGTCCAATAataaaattaactttta
tttctaaaaacgcaattttcatttatttacttttttatttttctgctgat
tcagcatttcatcgttgaaaaaagTGCCGATTttggcaataattgccgaa
aagagcaataattgcagtttatatcttaaacacccaactggtGGGGCAAT
TtcaatgacaaaaaaacaacattcctttttttttaataacgtTTATGGCT
TTttcgtaaaagcgaaagacacaaatataatttttgggTCCAGTATGCAG
AAATAGTGTCAAGGCCTGCAGGCAACCTAGTAGGGTTGGATATGGGTGTA
GTTTAAGTGTGGTTATGATATGTATCAGATTGGCCCAGACAtaattaatc
gaacagttcgattacagaactaattgaactttgtcgaacttaatcgaacg
acaaaagttcgattaaattctttaatccaacttttcaaaagtcgctaaaa
ttgtgagtattcgattaagttcgacaaaatatattaagttcgacaaagtt
tgaCAACGAGAAATGtcgacaaattcaacaaaaaactccgttcgataaag
ttcgacaacaagaaaggtttgacaaattcgacaaaaaactctgTTCGAAA
AAAGTTCGAcaacaaaaaatgacctcctttgggtactacCGTGGACAAct
cctgggggtcccggcagaaGTCCCGGGGGTTGGattggtgcccactggtc
aggaGGGTGTAAGGGTACACATCTGTACCGTttggggtccttcaaagttc
ctcaaagtgttgtcaaaagccaggaaaaattgcaaaaaatgacCAGCTCT
GGTGGGACCAATCGAGGCCTCTACAGCCccccacagcctaccacagccct
tcggaCCCCTTCGGATACCCTTTGCCTTGCTTTCCCTCAAAGCCAgtacc
ctccatcagtcatccggagcctttaaaaggcttgaaaaggcggaaaggct
tgaaaattggtcaaaattggaaaaaaattacctcctttgggtaccaccgt
ggacggcccctggAGGTCCCGGCCGGGGTTTCGGGGAGTTCGatcggtgc
ccactggtcaggggggatgtgagggtacacgcctgcaccgttcAGGGGgg
tgtgagggtacacgcctgcaccgttgggggtccttcaaagttcctaaAAG
tgccgtcaaaagccggcaaaaattgccaaaaatgacctCCATTGTAGGCT
GCTGCTACACTGAGACCAACtgaggcctctacagccctcAACAGCCCCCC
CCCATAGCCCTTCGGGGTCCCTAAATGTCCACTGTTCAAATTGTGCTTCG
CTGAAATCTTCACTCTGCCTTAGTGAAAAGTAGAAATCGCCAATTCAACC
AACCCAAGAAActaactgttttaaattcaaGGAATGAACTGATTTTGAAA
TGTTGGCATGTGAATAGGTTCACCCTCAAACTCCACGACACCAAAGactg
aaatgacgtcaattATGACGAAGACTTAACAGTGcacagtatatttttgt
aaacttgaaacaaatttttagtatagaatttttgactgaagatcgTAGCG
AAAGCTGGCTCTTATGTAAAAAGAGTATGTACTGTATTTTAAGTTTAACT
TTATAATATAAATTTACACAGTCCCATTCACTTTTAGAAAGTAAAGTTCA
ACAAACAGAATGACAACACTTTTTCGGAATTTCTGGAGGATAGTTCAATC
ACCATTATATCAAAGACAAAACAATCTTCTTTTACCAAAGAACTGTCTCT
TTACCACGCCATCTTCCCTTGGAGTCAGATTACCACCAAAGTAAGGATAa
agtttttatttgtactcctatgGGGAACTTGgtttaaaaacaattaaatt
atGGTCATTTTGATGGGTCATAAGTTCTTGCTTCTTCTTGCTGAATTTTA
TCCtgctttttgataaatatttataaaagattttacTATTTCATTCTCTT
GTAGTGTAAGTAAGTCtgttgaagatcgaattagagagagaaagGTATCT
ATTATTTCATTCTGTTGTTTCAGAGATGCtgacaaaaagaagaagaagaa
tccgTTGGTTGTTGCCGAATTAAAGAATGATACAAATACAGAATTTCATG
AACTACCCATAGTCCTCATCAAGGCTACTTTTAACAATACCTTAGTCTAC
TTGACTGACCATAAAGGTAAGTAAAAAATGTGCTTCACcttaattttgtt
atttttaagtttttgtaaGGGAAGCTAAAGCTACCAAAGAATTGTAAATT
ttgtcagaaaaaaattaaattcctgccaaatttaattcATTCATTTTAGA
AGAAAGTCTTACCATTAACAGGTGGACTgcattttgaaaattagtttttt
ttgtgtaAGATTCGACCTATCTTCTAATTCGTCTTTTGACACTTTAGTTT
CACCTTTCCTCTacttttatcctaaatattcggTCGCTagttattcatga
tatttattCTCATATGGTTTATCTTAGGAACTATGGCAACGTGGACATCA
GCTGTAAGTAGCCATCTCCTGAATCAAATACTTAAATGAAATGACTGTGA
TATTTGATGTTAGTTCTGCCCGGTTTCCGTATGCTTTAAAGGATTGCTAG
ATGTTTTATCCATTCCATTTGGTGACCCTTATCTATGTGAGAGAAATTAA
TGGAAGTTATATTTTCTTGTATTCAGGGTATAGAAGGATTTAAGAACGCC
AAACGTGGAACCAATTATGCTGGTAAAGTTGCTGGTGAAAGCATGGCCAA
GGTAAAACTTGCTTTCTCAATTCAAACTTTATTGTTTCAGCATGACTCAA
AAAAAATGTCCGATCAAGCTGTTTTTTtggaatgaaaattttgatttttg
ggactGATAAGTAGCAATTATTT

Coding sequence (CDS) from alignment at sc0000136:175339..179361+

>TCONS_00012025 ID=TCONS_00012025|Name=TCONS_00012025|organism=Clytia hemisphaerica|type=CDS|length=1836bp|location=Sequence derived from alignment at sc0000136:175339..179361+ (Clytia hemisphaerica)
ATGACAACACTTTTTCGGAATTTCTGGAGGATAGTTCAATCACCATTATA
TCAAAGACAAAACAATCTTCTTTTACCAAAGAACTGTCTCTTTACCACGC
CATCTTCCCTTGGAGTCAGATTACCACCAAAAGATGCtgacaaaaagaag
aagaagaatccgTTGGTTGTTGCCGAATTAAAGAATGATACAAATACAGA
ATTTCATGAACTACCCATAGTCCTCATCAAGGCTACTTTTAACAATACCT
TAGTCTACTTGACTGACCATAAAGGAACTATGGCAACGTGGACATCAGCT
GGTATAGAAGGATTTAAGAACGCCAAACGTGGAACCAATTATGCTGGTAA
AGTTGCTGGTGAAAGCATGGCCAAGGTAAAACTTGCTTTCTCAATTCAAA
CTTTATTGTTTCAGCATGACTCAAAAAAAATGTCCGATCAAGCTGTTTTT
TtggaatgaATGACAACACTTTTTCGGAATTTCTGGAGGATAGTTCAATC
ACCATTATATCAAAGACAAAACAATCTTCTTTTACCAAAGAACTGTCTCT
TTACCACGCCATCTTCCCTTGGAGTCAGATTACCACCAAAAGATGCtgac
aaaaagaagaagaagaatccgTTGGTTGTTGCCGAATTAAAGAATGATAC
AAATACAGAATTTCATGAACTACCCATAGTCCTCATCAAGGCTACTTTTA
ACAATACCTTAGTCTACTTGACTGACCATAAAGGAACTATGGCAACGTGG
ACATCAGCTGGTATAGAAGGATTTAAGAACGCCAAACGTGGAACCAATTA
TGCTGGTAAAGTTGCTGGTGAAAGCATGGCCAAGGTAAAACTTGCTTTCT
CAATTCAAACTTTATTGTTTCAGCATGACTCAAAAAAAATGTCCGATCAA
GCTGTTTTTTtggaatgaATGACAACACTTTTTCGGAATTTCTGGAGGAT
AGTTCAATCACCATTATATCAAAGACAAAACAATCTTCTTTTACCAAAGA
ACTGTCTCTTTACCACGCCATCTTCCCTTGGAGTCAGATTACCACCAAAA
GATGCtgacaaaaagaagaagaagaatccgTTGGTTGTTGCCGAATTAAA
GAATGATACAAATACAGAATTTCATGAACTACCCATAGTCCTCATCAAGG
CTACTTTTAACAATACCTTAGTCTACTTGACTGACCATAAAGGAACTATG
GCAACGTGGACATCAGCTGGTATAGAAGGATTTAAGAACGCCAAACGTGG
AACCAATTATGCTGGTAAAGTTGCTGGTGAAAGCATGGCCAAGGTAAAAC
TTGCTTTCTCAATTCAAACTTTATTGTTTCAGCATGACTCAAAAAAAATG
TCCGATCAAGCTGTTTTTTtggaatgaATGACAACACTTTTTCGGAATTT
CTGGAGGATAGTTCAATCACCATTATATCAAAGACAAAACAATCTTCTTT
TACCAAAGAACTGTCTCTTTACCACGCCATCTTCCCTTGGAGTCAGATTA
CCACCAAAAGATGCtgacaaaaagaagaagaagaatccgTTGGTTGTTGC
CGAATTAAAGAATGATACAAATACAGAATTTCATGAACTACCCATAGTCC
TCATCAAGGCTACTTTTAACAATACCTTAGTCTACTTGACTGACCATAAA
GGAACTATGGCAACGTGGACATCAGCTGGTATAGAAGGATTTAAGAACGC
CAAACGTGGAACCAATTATGCTGGTAAAGTTGCTGGTGAAAGCATGGCCA
AGGTAAAACTTGCTTTCTCAATTCAAACTTTATTGTTTCAGCATGACTCA
AAAAAAATGTCCGATCAAGCTGTTTTTTtggaatga
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_006758XLOC_006758Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00012025-exon-sc0000136-1491911889:175339..175426TCONS_00012025-exon-sc0000136-1491911889:175339..175426Clytia hemisphaericaexon
TCONS_00012025-exon-sc0000136-1510915933:175339..175426TCONS_00012025-exon-sc0000136-1510915933:175339..175426Clytia hemisphaericaexon
TCONS_00012025-exon-sc0000136-1575043694:175339..175426TCONS_00012025-exon-sc0000136-1575043694:175339..175426Clytia hemisphaericaexon
TCONS_00012025-exon-sc0000136-1491911889:178126..178278TCONS_00012025-exon-sc0000136-1491911889:178126..178278Clytia hemisphaericaexon
TCONS_00012025-exon-sc0000136-1510915933:178126..178278TCONS_00012025-exon-sc0000136-1510915933:178126..178278Clytia hemisphaericaexon
TCONS_00012025-exon-sc0000136-1575043694:178126..178278TCONS_00012025-exon-sc0000136-1575043694:178126..178278Clytia hemisphaericaexon
TCONS_00012025-exon-sc0000136-1491911889:178512..178654TCONS_00012025-exon-sc0000136-1491911889:178512..178654Clytia hemisphaericaexon
TCONS_00012025-exon-sc0000136-1510915933:178512..178654TCONS_00012025-exon-sc0000136-1510915933:178512..178654Clytia hemisphaericaexon
TCONS_00012025-exon-sc0000136-1575043694:178512..178654TCONS_00012025-exon-sc0000136-1575043694:178512..178654Clytia hemisphaericaexon
TCONS_00012025-exon-sc0000136-1491911889:178966..178991TCONS_00012025-exon-sc0000136-1491911889:178966..178991Clytia hemisphaericaexon
TCONS_00012025-exon-sc0000136-1510915933:178966..178991TCONS_00012025-exon-sc0000136-1510915933:178966..178991Clytia hemisphaericaexon
TCONS_00012025-exon-sc0000136-1575043694:178966..178991TCONS_00012025-exon-sc0000136-1575043694:178966..178991Clytia hemisphaericaexon
TCONS_00012025-exon-sc0000136-1491911889:179165..179361TCONS_00012025-exon-sc0000136-1491911889:179165..179361Clytia hemisphaericaexon
TCONS_00012025-exon-sc0000136-1510915933:179165..179361TCONS_00012025-exon-sc0000136-1510915933:179165..179361Clytia hemisphaericaexon
TCONS_00012025-exon-sc0000136-1575043694:179165..179361TCONS_00012025-exon-sc0000136-1575043694:179165..179361Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00012025-proteinTCONS_00012025-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000136supercontigsc0000136:175339..179361 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
26.6083	27.8728	14.7289	15.7214	34.288	31.1465	31.9286	34.1613	12.9551	14.1954	13.7784	12.2078	11.4043	11.4351	9.73696	12.9715	26.1891	20.4735	6.91416	9.20841	16.5792	21.7506	28.4747	28.3531	22.2197	23.2301	8.91862	9.38796	7.87551	17.3851
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR001971Ribosomal_S11
Vocabulary: Biological Process
TermDefinition
GO:0006412translation
Vocabulary: Cellular Component
TermDefinition
GO:0005840ribosome
Vocabulary: Molecular Function
TermDefinition
GO:0003735structural constituent of ribosome
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006412 translation
cellular_component GO:0005840 ribosome
molecular_function GO:0003735 structural constituent of ribosome
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00012025 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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