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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00012032 ID=TCONS_00012032|Name=TCONS_00012032|organism=Clytia hemisphaerica|type=transcript|length=1386bp
AAAAAGTATTTGAACAACACACGTGGTAAATTTGCATCAAAATACACAAA
CTTTGAAGAGGATCACAACATAACTAATGCGGAAGAAAATGAAAGGAAGG
GAATTTCAATTTCCCACAGAAGGAGAGTTTGTTGAACAACACACGTGGTA
AATTTGCATCAAAATACACAAACTTTAAGAAGAATTACAACATAACTAAT
GCGGAAGAAAATGAAAGGAAGAGAATTTCAATTTCCCACTGAAGGAGAGT
TAGAGATGACCATATAAGGATTGTTTTGAACAAGACCAAGTCTCTAGCAC
AGTGTTTTTCCAAAGATGGCTGAGAACCTATATAAAGTGTGGTGCAAAGA
ATCTATAAATCATTCCTTCATCGCTTTTTTTTCTGTCATCTAAATTTAAA
AGgcaAAAGATCGTGAAAAATGAAGACATCCTTGGCGTTTTTATTCGCTG
TTTTGGCTTGTGCAAGCGCGACCAACCTTTTGAGAGTAAGGACAGTCACA
AGAGTGTACACATCTTCCTATCGCATCATCAAGACACCAGAAACATGGAT
CAATGCACAAAAGAAATGCAGAGCTTGTGGTGGAAACCTTGCTACCATCA
CAAACTCAAATGATCATGCTTATTTGGCTTTTCAATTAAAGTGAGTTTGA
ACTTTTGTCTTCTCGCGAATAGAAAATTCCGAGTTACTTTTCCATTCATC
GGCCTCGCTAGTTCGTTTTGCCATACTTTTGGAAATGATTTTCGTATGAG
GTTTCGTATAAAACTGGCATATTTTCCGAATTCAATAAGTTCGGTTGCTT
CAATTCACTTTCTCAGAgactttgactttttttttgactttatatAAAAC
ACTTCTATGGTAGAACTCTTACAATGACACTTTTTTTACTtcaggaaaat
gaaaattaagtcTGCATGGGTTGGTTTAAAcgacattaaaaaagaaaaga
cctTTGTATGGGTAGCCGGTATTTCCGCTTTCGGTGGAAAATCTGGTTAC
AAAAAATGGTGCCCCAAAGAACCAAACAACAATGGAAACGAGGATTGTGT
GGAACTCATTGCCAGCCATAAAGCAGGACCTTGTTTGAACGACCTCCGTT
GTTCATTCTCGAAACACAAACGAGGATATATTTGCGAGATCGATGCCTCC
AGGACAACACAAGATGTAATTGTTTAGGAGAATACTCTTGTACTTTTAAT
GACGTTtattctgaaaaatatttttagacctacctcggaggtccttaaat
ttaacctttgttcgtccgttcgttcgtccatCCCTTCTTCTGTCCGTTCA
TTAGTTAACAGCTTTTCTCGGGCATGGcccattatttttttctaattttc
tgcaTTGTTATGCAGTacccaaaaagtgacggagcc Run BLAST on NCBI transcript from alignment at sc0000136:312305..314313+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00012032 ID=TCONS_00012032|Name=TCONS_00012032|organism=Clytia hemisphaerica|type=transcript|length=2009bp|location=Sequence derived from alignment at sc0000136:312305..314313+ (Clytia hemisphaerica)
AAAAAGTATTTGAACAACACACGTGGTAAATTTGCATCAAAATACACAAA
CTTTGAAGAGGATCACAACATAACTAATGCGGAAGAAAATGAAAGGAAGG
GAATTTCAATTTCCCACAGAAGGAGAGTTTGTTGAACAACACACGTGGTA
AATTTGCATCAAAATACACAAACTTTAAGAAGAATTACAACATAACTAAT
GCGGAAGAAAATGAAAGGAAGAGAATTTCAATTTCCCACTGAAGGAGAGT
TAGAGATGACCATATAAGGATTGTTTTGAACAAGACCAAGTCTCTAGCAC
AGTGTTTTTCCAAAGATGGCTGAGAACCTATATAAAGTGTGGTGCAAAGA
ATCTATAAATCATTCCTTCATCGCTTTTTTTTCTGTCATCTAAATTTAAA
AGGTAAGCAGTGTTTTTAATACTTCTTTACTTCAATTTCAATGGTACATC
GACCATTATGTTATTCATGCCTgagatttattttgattttctttttcagg
caAAAGATCGTGAAAAATGAAGACATCCTTGGCGTTTTTATTCGCTGTTT
TGGCTTGTGCAAGCGCGACCAGTAAATTATTTTGTTCCTAAACTACCTTT
CATTAACTCTTTTACCATTTCCTTTCTTTTTCCTGAGAAATGATGCCAGA
ACCATGAGTATGGCTGTACCATTCAATATCCATACATGGGATGGACGTAC
TTTCTGAGGATTGATTTCTTGGAAATAGATCCTCCAGGACAaatggaaaa
attttatataaacGTGACCGAGTTATAAATACTACTTTGATTCTACCTTA
TTCCTCGAAACTTTCTTTGGAAAACTTCTGGAAATGCTCTTCCACGTATT
AAATTGTtctaatagatcttatcggagttttcagatttttctaaataagc
gatgcattgtgtgattgtttcgggagtattacactAGAATTCCCtcattc
ctaagagatttctattgtaatactctcaaaacaatcccacaatgcattgt
cgcttttttagaaaaatcaaaaactccgatatgACAGGATATGATCTATT
GTTTCCTCTCATTCGATATCGATCATTTAATGTTCATTATATTGCAGACC
TTTTGAGAGTAAGGACAGTCACAAGAGTGTACACATCTTCCTATCGCATC
ATCAAGACACCAGAAACATGGATCAATGCACAAAAGAAATGCAGAGCTTG
TGGTGGAAACCTTGCTACCATCACAAACTCAAATGATCATGCTTATTTGG
CTTTTCAATTAAAGTGAGTTTGAACTTTTGTCTTCTCGCGAATAGAAAAT
TCCGAGTTACTTTTCCATTCATCGGCCTCGCTAGTTCGTTTTGCCATACT
TTTGGAAATGATTTTCGTATGAGGTTTCGTATAAAACTGGCATATTTTCC
GAATTCAATAAGTTCGGTTGCTTCAATTCACTTTCTCAGAgactttgact
ttttttttgactttatatAAAACACTTCTATGGTAGAACTCTTACAATGA
CACTTTTTTTACTtcaggaaaatgaaaattaagtcTGCATGGGTTGGTTT
AAAcgacattaaaaaagaaaagacctTTGTATGGGTAGCCGGTATTTCCG
CTTTCGGTGGAAAATCTGGTTACAAAAAATGGTGCCCCAAAGAACCAAAC
AACAATGGAAACGAGGATTGTGTGGAACTCATTGCCAGCCATAAAGCAGG
ACCTTGTTTGAACGACCTCCGTTGTTCATTCTCGAAACACAAACGAGGAT
ATATTTGCGAGATCGATGCCTCCAGGACAACACAAGATGTAATTGTTTAG
GAGAATACTCTTGTACTTTTAATGACGTTtattctgaaaaatatttttag
acctacctcggaggtccttaaatttaacctttgttcgtccgttcgttcgt
ccatCCCTTCTTCTGTCCGTTCATTAGTTAACAGCTTTTCTCGGGCATGG
cccattatttttttctaattttctgcaTTGTTATGCAGTacccaaaaagt
gacggagcc
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00012032-exon-sc0000136-1491911889:312305..312706 | TCONS_00012032-exon-sc0000136-1491911889:312305..312706 | Clytia hemisphaerica | exon |
| TCONS_00012032-exon-sc0000136-1510915933:312305..312706 | TCONS_00012032-exon-sc0000136-1510915933:312305..312706 | Clytia hemisphaerica | exon |
| TCONS_00012032-exon-sc0000136-1575043694:312305..312706 | TCONS_00012032-exon-sc0000136-1575043694:312305..312706 | Clytia hemisphaerica | exon |
| TCONS_00012032-exon-sc0000136-1491911889:312804..312875 | TCONS_00012032-exon-sc0000136-1491911889:312804..312875 | Clytia hemisphaerica | exon |
| TCONS_00012032-exon-sc0000136-1510915933:312804..312875 | TCONS_00012032-exon-sc0000136-1510915933:312804..312875 | Clytia hemisphaerica | exon |
| TCONS_00012032-exon-sc0000136-1575043694:312804..312875 | TCONS_00012032-exon-sc0000136-1575043694:312804..312875 | Clytia hemisphaerica | exon |
| TCONS_00012032-exon-sc0000136-1491911889:313402..314313 | TCONS_00012032-exon-sc0000136-1491911889:313402..314313 | Clytia hemisphaerica | exon |
| TCONS_00012032-exon-sc0000136-1510915933:313402..314313 | TCONS_00012032-exon-sc0000136-1510915933:313402..314313 | Clytia hemisphaerica | exon |
| TCONS_00012032-exon-sc0000136-1575043694:313402..314313 | TCONS_00012032-exon-sc0000136-1575043694:313402..314313 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000136 | supercontig | sc0000136:312305..314313 + |
Blast
The following BLAST results are available for this feature:
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