TCONS_00012033 (transcript) - C. hemisphaerica

Overview
NameTCONS_00012033
Unique NameTCONS_00012033
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1517

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00012033 ID=TCONS_00012033|Name=TCONS_00012033|organism=Clytia hemisphaerica|type=transcript|length=1517bp
tttcatgttattgaccGTCAGTCAGCTCTTCAAATACGGTCAAAGCAGTC
AACAAGAATATGAAATATTCAGCAACTNTTTTTTcgctaaatttttgaaa
attataaaaaaaactcaaattttttttttgacatgaGGCAGTAATGAGGA
ATCCACCAttacttttcatgttattgaccGTCAGTCAGCTCTTCAAATAC
GGTCAAAGCAGTCAACAAGAATATGAAATATTCAGCAACTTTACGCACGA
GGCTGAATGCACAGATGGAAGCCCTGGGTCGACTTTTACAAGTATCACTG
AATGTATTGGTCATTGTCAATTGAAAGGAAAAACTCACGTTTTAATGACG
GAAGATAAAACTTGTCATTGTACAAACGAAGATTGTTCATTGTCAAATTC
TCAAGAGAAAAATAATGGCACTAAAATTGCAGGATCGacattttacaaaa
atttgaagatgaagatgaagttGAACAAGAACCCAACATGTTACAGCGCT
GTCGATCCAAACAAATTTGCTTCTGCTGTGCTACCTAAAGCTGGTCGGTT
GAAGTATATCAAACTGGTACACGTATCAGGAATGGCAAGTTGTCGGTCCA
CCGAATATGTGAATTCAAGATGGGGATGCGATCCTGTTATACCAGCAGAC
TCGTACACATCCTTCACTATTATAACTGATGCAGACAAAAACAACATCTA
TCCACCCGGACCAAAATACTGGAAGTACTTGATGTCACCGGAGTTTGATG
AGTTCGCCGATGAGTTTGTATTTCAGCCAGATACACCATACCCTGTTCTT
GAAAACCAGGAAATAAGAGTTTATCACAGCGAACCACATTTTGATGAAAC
TAATAAcggaaacaacattggtgatcaTTGTATCGATATTCTCGTAGAGT
ACGAGTGACACTCGTGGACGAGGAACGTTACGAGATTCTGATTTTTACGC
TTATAGCACTGCTAATATCGATGTTCTTATAGATTATGAATTTTGCTGGT
TTTTTTATTCTGATTTTTACACAAACAACTCTGTGTtcgatgttcttgta
aaatacGAGCAATGCTGATTTACGATAACGACATCGTATTCATATTCTGT
TAGAATATGACACTGACACTGTAAACTAAAGAAACTCatgaaatacaaaa
tttcatttattatgtttttatcttattcaaaatttacaaaaatatacata
TTTAAGTTTTCTGTGTTTTTCAGTGTCTTTCTGTTTTTTGCCACATGTGA
ACATAGCATTCTTAAGGGTCTAGACacattttggaagttttcttGCATGT
CCACTTTGTTATGGTCTTTGTCCTTTGTTTTGTTCTGCATTTTACAcaca
attcaattttaaaataatttatataatttatgcacaaaaaataatttatt
tattcataatttattacatatcaacttttttttaaataatttttgtccac
tttgctttttgatacaAAACcagcatttttctttttgtcatcAGTTGTCA
ACTAGCTTTTAAAGAGT
Run BLAST on NCBI

protein sequence of TCONS_00012033-protein

>TCONS_00012033-protein ID=TCONS_00012033-protein|Name=TCONS_00012033-protein|organism=Clytia hemisphaerica|type=polypeptide|length=254bp
MRNPPLLFMLLTVSQLFKYGQSSQQEYEIFSNFTHEAECTDGSPGSTFTS
ITECIGHCQLKGKTHVLMTEDKTCHCTNEDCSLSNSQEKNNGTKIAGSTF
YKNLKMKMKLNKNPTCYSAVDPNKFASAVLPKAGRLKYIKLVHVSGMASC
RSTEYVNSRWGCDPVIPADSYTSFTIITDADKNNIYPPGPKYWKYLMSPE
FDEFADEFVFQPDTPYPVLENQEIRVYHSEPHFDETNNGNNIGDHCIDIL
VEYE
Run BLAST on NCBI

transcript from alignment at sc0000136:336337..339275+

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00012033 ID=TCONS_00012033|Name=TCONS_00012033|organism=Clytia hemisphaerica|type=transcript|length=2939bp|location=Sequence derived from alignment at sc0000136:336337..339275+ (Clytia hemisphaerica)
tttcatgttattgaccGTCAGTCAGCTCTTCAAATACGGTCAAAGCAGTC
AACAAGAATATGAAATATTCAGCAACTNTTTTTTcgctaaatttttgaaa
attataaaaaaaactcaaattttttttttgacatgaGGCAGTAATGAGGA
ATCCACCAttacttttcatgttattgaccGTCAGTCAGCTCTTCAAATAC
GGTCAAAGCAGTCAACAAGAATATGAAATATTCAGCAACTTTACGCACGA
GGCTGAATGCACAGATGGAAGCCCTGGGTCGACTTTTACAAGTATCACTG
AATGTATTGGTCATTGTCAATTGAAAGGAAAAACTCACGTTTTAATGACG
GAAGATAAAACTTGTCATTGTACAAACGAAGATTGTTCATTGTCAAATTC
TCAAGAGAAAAATAATGGCACTAAAATTGCAGGATCGacattttacaaaa
attgtGAGTTTAATTAATTTTCCAAAACATAGTATGTATGGGTCAGTGCA
GCCTCTAGCAATAgtctcaggggggggggggggtaaaNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNggg
ggggggggtgaaaatAGCCTCAAGCTAAATTTTAAGAATGTAGCCCCATT
TCCAAGAAacggaaaatcaaaaaatatttttcttgaatgTTCTTAAACAA
AGTTATCAACTAAATGTAATAAAGTTTTTCCTAATGACAAAATATCAACA
TGATGCATTGTTGCTCaaggaaaaatttggaaaattgaaaatcatttgAC
GTATCAGTTCATTTCATCCCCCAGTTCGATTACTCAAAACATAGCCCCCT
ATTAAGGTTAGCCCCAGCATCTTTTGGAAAGGTTGCCCCTAGacaagaaa
aatgttttaggtATCTCCTAAGCTTATAGGGGGTGCATTTTATGAAATAC
TTGCCTCGTTACCTTCATTGAATTAATATTTACgaattttgcgaattttc
tcCTAAGTTATTCGCCAAAACTGGATTTAACTAATatccaataaaatttt
ttactAGTTTTACTAATTGGtccctttttttgcttaaaaatctcCCACTC
CAGCCCCATCACTGCTcctaataaattatttttaattctgttatttttaa
gcctaatttcCTAATTACTTTAcagtgaagatgaagatgaagttGAACAA
GAACCCAACATGTTACAGCGCTGTCGATCCAAACAAATTTGCTTCTGCTG
TGCTACCTAAAGCTGGTCGGTTGAAGTATATCAAACTGGTACACGTATCA
GGAATGGCAAGTTGTCGGTCCACCGAATATGTGAATTCAAGATGGGGATG
CGATCCTGTTATACCAGCAGACTCGTACACATCCTTCACTATTATAACTG
ATGCAGACAAAAACAACATCTATCCACCCGGACCAAAATACTGGAAGTAC
TTGATGTCACCGGAGTTTGATGAGTTCGCCGATGAGTTTGTATTTCAGCC
AGATACACCATACCCTGTTCTTGAAAACCAGGAAATAAGAGTTTATCACA
GCGAACCACATTTTGATGAAACTAATAAcggaaacaacattggtgatcaT
TGTATCGATATTCTCGTAGAGTACGAGTGACACTCGTGGACGAGGAACGT
TACGAGATTCTGATTTTTACGCTTATAGCACTGCTAATATCGATGTTCTT
ATAGATTATGAATTTTGCTGGTTTTTTTATTCTGATTTTTACACAAACAA
CTCTGTGTtcgatgttcttgtaaaatacGAGCAATGCTGATTTACGATAA
CGACATCGTATTCATATTCTGTTAGAATATGACACTGACACTGTAAACTA
AAGAAACTCatgaaatacaaaatttcatttattatgtttttatcttattc
aaaatttacaaaaatatacataTTTAAGTTTTCTGTGTTTTTCAGTGTCT
TTCTGTTTTTTGCCACATGTGAACATAGCATTCTTAAGGGTCTAGACaca
ttttggaagttttcttGCATGTCCACTTTGTTATGGTCTTTGTCCTTTGT
TTTGTTCTGCATTTTACAcacaattcaattttaaaataatttatataatt
tatgcacaaaaaataatttatttattcataatttattacatatcaacttt
tttttaaataatttttgtccactttgctttttgatacaAAACcagcattt
ttctttttgtcatcAGTTGTCAACTAGCTTTTAAAGAGT

Coding sequence (CDS) from alignment at sc0000136:336337..339275+

>TCONS_00012033 ID=TCONS_00012033|Name=TCONS_00012033|organism=Clytia hemisphaerica|type=CDS|length=1530bp|location=Sequence derived from alignment at sc0000136:336337..339275+ (Clytia hemisphaerica)
ATGAGGAATCCACCAttacttttcatgttattgaccGTCAGTCAGCTCTT
CAAATACGGTCAAAGCAGTCAACAAGAATATGAAATATTCAGCAACTTTA
CGCACGAGGCTGAATGCACAGATGGAAGCCCTGGGTCGACTTTTACAAGT
ATCACTGAATGTATTGGTCATTGTCAATTGAAAGGAAAAACTCACGTTTT
AATGACGGAAGATAAAACTTGTCATTGTACAAACGAAGATTGTTCATTGT
CAAATTCTCAAGAGAAAAATAATGGCACTAAAATTGCAGGATCGacattt
tacaaaaatttgaagatgaagatgaagttGAACAAGAACCCAACATGTTA
CAGCGCTGTCGATCCAAACAAATTTGCTTCTGCTGTGCTACCTAAAGCTG
GTCGGTTGAAGTATATCAAACTGGTACACGTATCAGGAATGGCAAGTTGT
CGGTCCACCGAATATGTGAATTCAAGATGGGGATGCGATCCTGTTATACC
AGCAGACTCGTACACATCCTTCACTATTATAACTGATGCAGACAAAAACA
ACATCTATCCACCCGGACCAAAATACTGGAAGTACTTGATGTCACCGGAG
TTTGATGAGTTCGCCGATGAGTTTGTATTTCAGCCAGATACACCATACCC
TGTTCTTGAAAACCAGGAAATAAGAGTTTATCACAGCGAACCACATTTTG
ATGAAACTAATAAcggaaacaacattggtgatcaTTGTATCGATATTCTC
GTAGAGTACGAGTGAATGAGGAATCCACCAttacttttcatgttattgac
cGTCAGTCAGCTCTTCAAATACGGTCAAAGCAGTCAACAAGAATATGAAA
TATTCAGCAACTTTACGCACGAGGCTGAATGCACAGATGGAAGCCCTGGG
TCGACTTTTACAAGTATCACTGAATGTATTGGTCATTGTCAATTGAAAGG
AAAAACTCACGTTTTAATGACGGAAGATAAAACTTGTCATTGTACAAACG
AAGATTGTTCATTGTCAAATTCTCAAGAGAAAAATAATGGCACTAAAATT
GCAGGATCGacattttacaaaaatttgaagatgaagatgaagttGAACAA
GAACCCAACATGTTACAGCGCTGTCGATCCAAACAAATTTGCTTCTGCTG
TGCTACCTAAAGCTGGTCGGTTGAAGTATATCAAACTGGTACACGTATCA
GGAATGGCAAGTTGTCGGTCCACCGAATATGTGAATTCAAGATGGGGATG
CGATCCTGTTATACCAGCAGACTCGTACACATCCTTCACTATTATAACTG
ATGCAGACAAAAACAACATCTATCCACCCGGACCAAAATACTGGAAGTAC
TTGATGTCACCGGAGTTTGATGAGTTCGCCGATGAGTTTGTATTTCAGCC
AGATACACCATACCCTGTTCTTGAAAACCAGGAAATAAGAGTTTATCACA
GCGAACCACATTTTGATGAAACTAATAAcggaaacaacattggtgatcaT
TGTATCGATATTCTCGTAGAGTACGAGTGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_006763XLOC_006763Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00012033-proteinTCONS_00012033-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00012033-exon-sc0000136-1491911889:336337..336789TCONS_00012033-exon-sc0000136-1491911889:336337..336789Clytia hemisphaericaexon
TCONS_00012033-exon-sc0000136-1510915933:336337..336789TCONS_00012033-exon-sc0000136-1510915933:336337..336789Clytia hemisphaericaexon
TCONS_00012033-exon-sc0000136-1575043694:336337..336789TCONS_00012033-exon-sc0000136-1575043694:336337..336789Clytia hemisphaericaexon
TCONS_00012033-exon-sc0000136-1491911889:338212..339275TCONS_00012033-exon-sc0000136-1491911889:338212..339275Clytia hemisphaericaexon
TCONS_00012033-exon-sc0000136-1510915933:338212..339275TCONS_00012033-exon-sc0000136-1510915933:338212..339275Clytia hemisphaericaexon
TCONS_00012033-exon-sc0000136-1575043694:338212..339275TCONS_00012033-exon-sc0000136-1575043694:338212..339275Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000136supercontigsc0000136:336337..339275 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.379731	0.346399	0.307108	0.300457	0.405278	0.317947	0.523076	0.457051	0.345049	0.198181	0.0832858	0.453806	3.21128	2.97315	0.790697	0.748322	0.325786	0.586112	4.30299	6.22523	1.75705	1.9571	0.808586	1.55507	2.24235	3.87254	0.520687	0.566895	0.331157	0.306724
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00012033 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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