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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00012042 ID=TCONS_00012042|Name=TCONS_00012042|organism=Clytia hemisphaerica|type=transcript|length=4200bpRun BLAST on NCBI protein sequence of TCONS_00012042-protein >TCONS_00012042-protein ID=TCONS_00012042-protein|Name=TCONS_00012042-protein|organism=Clytia hemisphaerica|type=polypeptide|length=539bp MAQTLVEDRAYHLTGDENVDGKCFYSVKLTDSCLKAIEQYIIHKNTSRSQRun BLAST on NCBI transcript from alignment at sc0000136:148489..175307- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00012042 ID=TCONS_00012042|Name=TCONS_00012042|organism=Clytia hemisphaerica|type=transcript|length=26819bp|location=Sequence derived from alignment at sc0000136:148489..175307- (Clytia hemisphaerica) Coding sequence (CDS) from alignment at sc0000136:148489..175307- >TCONS_00012042 ID=TCONS_00012042|Name=TCONS_00012042|organism=Clytia hemisphaerica|type=CDS|length=19440bp|location=Sequence derived from alignment at sc0000136:148489..175307- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00012042 vs. Swiss-Prot (Human)
Match: ELL3 (RNA polymerase II elongation factor ELL3 OS=Homo sapiens GN=ELL3 PE=1 SV=2) HSP 1 Score: 81.2629 bits (199), Expect = 7.847e-16 Identity = 48/128 (37.50%), Postives = 72/128 (56.25%), Query Frame = 2
Query: 1493 STATSTGEESPPTVASTSKTPEYLKQYKPIRWKEQRRQYKTDFETEYPVYLRLKEKVDAVKIKFKELQEEYNGYNPGTPEHQYCEKKIIEAYEKLERDDDNYHEQRRKYEELEQKLRYIKKLVVEYDQ 1876
S++ ESP S P+YL QY+ I EQ+ Y+ DFET+Y Y L +V +F EL E GTPE++ E KII+ Y+K + +Y E++R+ E L QKL +IK L++E+++
Sbjct: 269 SSSVQEDSESP----SPEDIPDYLLQYRAIHSAEQQHAYEQDFETDYAEYRILHARVGTASQRFIELGAEIKRVRRGTPEYKVLEDKIIQEYKKFRKQYPSYREEKRRCEYLHQKLSHIKGLILEFEE 392 The following BLAST results are available for this feature:
BLAST of TCONS_00012042 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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