TCONS_00012075 (transcript) - C. hemisphaerica

Overview
NameTCONS_00012075
Unique NameTCONS_00012075
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length812

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00012075 ID=TCONS_00012075|Name=TCONS_00012075|organism=Clytia hemisphaerica|type=transcript|length=812bp
ggaaaataaagtgaaagtgtatttttaattttgcttaTCATTGTTCTAGA
GTTCTTGGTTAAACAACAACATTGTGATGAGGAAAAAGTCTAATATACAG
CCATTGTGTCAATGATATTCTATCATACGTTTCAACATGATAATGTATCT
ACACTATTGTGCGTACCAAATATTCAATGTTGCTGCTTCTTCTTGCGCAG
CGCAGCCTGCAACCAAAGTAAAGTATCGAGAAGAAACGTATAAGGCGCCa
acacaaatatcttcatttcacGTCCTCGTtaggtctaaaaagtgagacgg
tctgtctacaaagtgaggcggtcggtcggtctacaaagtgaggcggtcgg
tcggtctacaaagtgaggcggtcagtcggtctacaaagtgaggcggtcgg
tcggtctacaaagtgaggcggtcagtcggtctacaaagtgaggcgggcGG
TCGATCTAAAAAGACTACCAAATTACGTGGATGTATTACCATGCAGCAAA
AATATGCCACTCTCAATTTTGAAGAGGGCTAAATTAAATGTTTCCATTGG
TCGGTTTttggtctttgtttattttgttaagaTGGTTGGTTGCGATAAGC
CCCATAGCATAATAATTTCTGAAGAACAACTGTACAAATCCATAACAAAA
TGTTCTCTATTTAAGAAACAGGATACCATGTCATGACCATTAGACCATTC
CCTATCCATGTACAAACGATGGCACCAGTGACCAGAGCAGAGAGACcaga
tcaatcaatcaatattaagaaaccaaagaaagaaaaagcaaaatagcTGT
TGAGCTTCTTGC
Run BLAST on NCBI

transcript from alignment at sc0000136:122825..123636

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00012075 ID=TCONS_00012075|Name=TCONS_00012075|organism=Clytia hemisphaerica|type=transcript|length=812bp|location=Sequence derived from alignment at sc0000136:122825..123636 (Clytia hemisphaerica)
GCAAGAAGCTCAACAgctattttgctttttctttctttggtttcttaata
ttgattgattgatctgGTCTCTCTGCTCTGGTCACTGGTGCCATCGTTTG
TACATGGATAGGGAATGGTCTAATGGTCATGACATGGTATCCTGTTTCTT
AAATAGAGAACATTTTGTTATGGATTTGTACAGTTGTTCTTCAGAAATTA
TTATGCTATGGGGCTTATCGCAACCAACCAtcttaacaaaataaacaaag
accaaAAACCGACCAATGGAAACATTTAATTTAGCCCTCTTCAAAATTGA
GAGTGGCATATTTTTGCTGCATGGTAATACATCCACGTAATTTGGTAGTC
TTTTTAGATCGACCgcccgcctcactttgtagaccgactgaccgcctcac
tttgtagaccgaccgaccgcctcactttgtagaccgactgaccgcctcac
tttgtagaccgaccgaccgcctcactttgtagaccgaccgaccgcctcac
tttgtagacagaccgtctcactttttagacctaACGAGGACgtgaaatga
agatatttgtgttGGCGCCTTATACGTTTCTTCTCGATACTTTACTTTGG
TTGCAGGCTGCGCTGCGCAAGAAGAAGCAGCAACATTGAATATTTGGTAC
GCACAATAGTGTAGATACATTATCATGTTGAAACGTATGATAGAATATCA
TTGACACAATGGCTGTATATTAGACTTTTTCCTCATCACAATGTTGTTGT
TTAACCAAGAACTCTAGAACAATGAtaagcaaaattaaaaatacactttc
actttattttcc
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_006786XLOC_006786Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00012075-exon-sc0000136-1491911889:122825..123636TCONS_00012075-exon-sc0000136-1491911889:122825..123636Clytia hemisphaericaexon
TCONS_00012075-exon-sc0000136-1510915933:122825..123636TCONS_00012075-exon-sc0000136-1510915933:122825..123636Clytia hemisphaericaexon
TCONS_00012075-exon-sc0000136-1575043694:122825..123636TCONS_00012075-exon-sc0000136-1575043694:122825..123636Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000136supercontigsc0000136:122825..123636 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
2.72532	2.61902	2.66042	1.96324	4.11832	2.79342	0.859234	1.23045	0.656817	2.10648	1.50451	1.36477	1.58344	1.62714	1.76631	1.86727	2.25666	2.20064	4.57591	5.86784	4.81714	4.4931	4.6005	4.74426	2.1748	1.88795	4.38648	4.863	15.4021	15.7962
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00012075 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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