TCONS_00012090 (transcript) - C. hemisphaerica

Overview
NameTCONS_00012090
Unique NameTCONS_00012090
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length525

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00012090 ID=TCONS_00012090|Name=TCONS_00012090|organism=Clytia hemisphaerica|type=transcript|length=525bp
ATTCGCCGTCTTCTTGATGGTTGCATTTATTAATACAGAAGTTGAAGGCA
AATCAAAAGCAGATAAAAAAGCTGCAGGAGAGGAGATCGAACGCCTCGTC
GCGATTGGCCAAAGCAATGATGTCGAGATGGAAAGAATTTCCAAACAAAA
AGATTCTTTGGACAGCCAATTGCAACGAATGAATGCGAAGAGAGATTCCA
TCAGAGCTGAAATAACAAAAATTCTTGATGAccatcttccaatcaaacGC
ATAAGCTCCCGTCGAGATTATTCATTTAGTGAAGATGAGAAGGAAATGAT
TCCAAAATGTTGTCCATGGGTCATCTGGTGTTGCTTGTAGAAGAAAAGTA
TACTTTTGGGACTTGGAATATTGGATTATTTTGATTTACAGTATATTGAG
GTTAATTAGGATTATAGTGATAAAGTGGAAATAAAGAagatttaatttaa
aaagttcGTTGATTTACTCATTCTATTCGCCTTTTTCCTGGTCTCATCCT
TTTACATAAGATTTTTTTCCGATCT
Run BLAST on NCBI

protein sequence of TCONS_00012090-protein

>TCONS_00012090-protein ID=TCONS_00012090-protein|Name=TCONS_00012090-protein|organism=Clytia hemisphaerica|type=polypeptide|length=112bp
FAVFLMVAFINTEVEGKSKADKKAAGEEIERLVAIGQSNDVEMERISKQK
DSLDSQLQRMNAKRDSIRAEITKILDDHLPIKRISSRRDYSFSEDEKEMI
PKCCPWVIWCCL
Run BLAST on NCBI

transcript from alignment at sc0000137:143477..147002+

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00012090 ID=TCONS_00012090|Name=TCONS_00012090|organism=Clytia hemisphaerica|type=transcript|length=3526bp|location=Sequence derived from alignment at sc0000137:143477..147002+ (Clytia hemisphaerica)
ATTCGCCGTCTTCTTGATGGTTGCATTTATTAATACAGAAGTTGAAGGTG
agagattttgtaaatttttataattattagaGTCTATTCGCTTTAATTGT
GTATCAACTTGAAAAAACCcttaaattcaaaagtttttgaaacacctttt
ttatataaatttataaTGTAGTACTCAGAAACATCTTTTAAACAATAATC
ATATTGGTTGAGAAATAATGCGCAAAAAAGGAATTAATTCCCCCTTAAAG
TAAaagaactttttaatttttttatctacCTAGAATTTCGACCTGCTTTC
AGAATATTAAGCATAAATTTTACggtaaaaaaaataacaatatgaTAGAA
ATAAATTCCAATGATGCTACTTGGCGTAAATCTTCAGCATATAATTAAAT
CAACCGctcttttagatttttaataATTACTTTAATGATTTATATTAAGG
CAAATCAAAAGCAGATAAAAAAGCTGCAGGAGAGGAGATCGAACGCCTCG
TCGCGATTGGCCAAAGCAATGATGTCGAGATGGAAAGAATTTCCAAACAA
AAAGATTCTTTGGACAGCCAATTGCAACGAATGAATGCGAAGAGAGATTC
CATCAGAGCTGAAATAACAAAAATTCTTGATGAccatcttccaatcaaac
gTAGGTCACCCCTTTTATTTGATAGAGGATAGAACGATTCACAAGAAGAA
AAGTCTTACGTGTATTTTGCacatttcacttttttgaatattGTCGGTCA
AAAATGCCAGTAAAATAATTCAGCCGCTTCTCATAGTAGTTCACcgaaat
tataaaattttctcGATGCAAAAGTTTCTGGCATTTCTTTCTGTGGTTCT
TTCTTTGATTAATTTCGCCAGATGCAGTTTAAACATATCGTTTTTACACT
TTATTCTTTCTTCGTCAGCTGTAAAATTCAAGATTTACATCTTGTTTATC
GAATAAGGAAAATTTCTTACTTTTCACTAGGCCAACGTGATTGTTAATAA
TCCAATACTTCTTGACAATCGAATTACTCTTGTCcaaataagcagggggg
taggaaaatgTTCTAAATTCTNaaaggaaaacttttttttgtttagtCAG
CACAAAATCgaacacaatataacaataggaaacACCGGCCCGACAcaaaa
catgtgtctgatataaaacgggttttgtttttaaactagccatagctttc
actaaatgcccacgcagaagatcatgtcatgcacttataaagcttttaat
gctttaaagattaaagcattaaaaaaatcaggaataattgattgatttaa
ttattgaatgattgattagtTGATTGAGGCATATGCTTGATAGAAAAATA
TTCCATTAACACAATACTAGAAGAATTCgtgcagcttgataatttgataa
aatttaaggaaaagcttcaaaaatatatttaaaaaattatggtACATTAG
NTTAAcacaatacttgaagaattcgtgcagcttgataatttgataaaatt
taaggaaaagcttcaaaaatatatttaaaaaattatggtACATCAGCTCa
ctggttttcacatctcctgtttgtttttttctcccagtttctttcttaca
acaatatttgtcattattcacaatagaccttttctgataatgccgcagac
atcttagattgtaggcaaaatatatagcggtgaataaatcaagAAGGCAA
CCAATCAGAAATAGCTTGCTTTTTTCATTGGCTGCTATATTTcaacaatt
ctctattgctactttgcctaataaacaatagtcaagaaaatactacgtat
aaaatttatcaaaaagttctgcgccatcttaaattgggtgaaatgaaacc
aatcctagttaaggcccgacGGGCTCCTCTTGTGtgcgctgtgattgcac
ttctcaagctaaattttctatgttgttggtcaaaagaaaaataaaggaat
gccattgtggtctatTCAGACTTACAgttgagaaaagttgaaatgcgctt
taattttttttcaagtgcatagtactttttcatgatgcaatcttttctcc
aagctgaaaggatcgaagccattaagatgatcgcagtgcagacaatgaag
agacatgcctccaggaagctagactttttNNNNNNNNNNNNNNNNNNNNN
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NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCTTTTTTTCTTTACAGG
CATAAGCTCCCGTCGAGATTATTCATTTAGTGAAGATGAGAAGGAAATGA
TTCCAAAATGTTGTCCATGGGTCATCTGGTGTTGCTTGTAGAAGAAAAGT
ATACTTTTGGGACTTGGAATATTGGATTATTTTGATTTACAGTATATTGA
GGTTAATTAGGATTATAGTGATAAAGTGGAAATAAAGAagatttaattta
aaaagttcGTTGATTTACTCATTCTATTCGCCTTTTTCCTGGTCTCATCC
TTTTACATAAGATTTTTTTCCGATCT

Coding sequence (CDS) from alignment at sc0000137:143477..147002+

>TCONS_00012090 ID=TCONS_00012090|Name=TCONS_00012090|organism=Clytia hemisphaerica|type=CDS|length=339bp|location=Sequence derived from alignment at sc0000137:143477..147002+ (Clytia hemisphaerica)
TTCGCCGTCTTCTTGATGGTTGCATTTATTAATACAGAAGTTGAAGGCAA
ATCAAAAGCAGATAAAAAAGCTGCAGGAGAGGAGATCGAACGCCTCGTCG
CGATTGGCCAAAGCAATGATGTCGAGATGGAAAGAATTTCCAAACAAAAA
GATTCTTTGGACAGCCAATTGCAACGAATGAATGCGAAGAGAGATTCCAT
CAGAGCTGAAATAACAAAAATTCTTGATGAccatcttccaatcaaacGCA
TAAGCTCCCGTCGAGATTATTCATTTAGTGAAGATGAGAAGGAAATGATT
CCAAAATGTTGTCCATGGGTCATCTGGTGTTGCTTGTAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_006801XLOC_006801Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00012090-proteinTCONS_00012090-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00012090-exon-sc0000137-1491911889:143477..143523TCONS_00012090-exon-sc0000137-1491911889:143477..143523Clytia hemisphaericaexon
TCONS_00012090-exon-sc0000137-1510915933:143477..143523TCONS_00012090-exon-sc0000137-1510915933:143477..143523Clytia hemisphaericaexon
TCONS_00012090-exon-sc0000137-1575043694:143477..143523TCONS_00012090-exon-sc0000137-1575043694:143477..143523Clytia hemisphaericaexon
TCONS_00012090-exon-sc0000137-1491911889:143926..144126TCONS_00012090-exon-sc0000137-1491911889:143926..144126Clytia hemisphaericaexon
TCONS_00012090-exon-sc0000137-1510915933:143926..144126TCONS_00012090-exon-sc0000137-1510915933:143926..144126Clytia hemisphaericaexon
TCONS_00012090-exon-sc0000137-1575043694:143926..144126TCONS_00012090-exon-sc0000137-1575043694:143926..144126Clytia hemisphaericaexon
TCONS_00012090-exon-sc0000137-1491911889:146726..147002TCONS_00012090-exon-sc0000137-1491911889:146726..147002Clytia hemisphaericaexon
TCONS_00012090-exon-sc0000137-1510915933:146726..147002TCONS_00012090-exon-sc0000137-1510915933:146726..147002Clytia hemisphaericaexon
TCONS_00012090-exon-sc0000137-1575043694:146726..147002TCONS_00012090-exon-sc0000137-1575043694:146726..147002Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000137supercontigsc0000137:143477..147002 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.78308	0.63615	1.77967	0	0.226803	0	4.3169	2.78545	99.8225	19.4696	69.3467	120.093	2.01633	1.55525	27.3811	21.7275	0.195206	0.341347	0.703196	0	0.299973	0.635364	0.388271	0.706583	0.282527	0.832723	0.153946	0.328591	0.5959	0.492353
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00012090 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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