TCONS_00012102 (transcript) - C. hemisphaerica

Overview
NameTCONS_00012102
Unique NameTCONS_00012102
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length3792

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00012102 ID=TCONS_00012102|Name=TCONS_00012102|organism=Clytia hemisphaerica|type=transcript|length=3792bp
GCTTAggcaaaaaataaacaaaacaaaacacaatgAAGATTAACGTGGTA
ATAATGACCTTGATGACGTTCTATTTTACCGTCGCAGCAACAAGAGTGTA
CAATGATGCTGGTGACGTACTGGAACGTCAAATAAATGCCAAAAATACAa
aaCGATACGGTACATTTTGTGATGAATCAAAGACCGTTTGTGGATTTCGA
CATTGGGGTAAAAGACAGATGGTTCGTGGAGGATTTTGTAATTCCGATCG
CACTATCTGCAAAATCTTTGGCAAACGTGCTCTTTCcaatcatcttcaaa
tttgTTTGAATAAATGCGGACGTCAGCTATATATGGTCTTTCCAAACTGC
GTCAAAAACTGTCTAGCAGCTGGCATGAAACTATGATTCGTTTTGATAAT
GCTGATTTAACCTaggaatagacgatatcggcttcacatgaaaagtcaga
tttgacccccgataattccccacaatgctttgtgcgggaaaaatttcacc
gtgaacttttttccgccaaagcattgtgggcaatattcgggggtcaaatc
tgagttttcacgttaagccaaTGTCGTCtattattatacactggattaCA
AGTAGCTGATATTTGcagatttctcatgttctagctatgtccgcagtaat
gatagtTCACTCTCCTTTCCCTCAACAAAGgatttttcaaagcattttaa
ttgcttttttatcgaaattcaatcaatcaattcaaTCCCAAAAGAGCGCT
TGGCAATGGCAATGAGTCGgttatccagtgtctataataattcttTGATT
TAAATAACacgcccttctcacagacttgGTGGGACCCCctcccattggaa
aaattggccaaactATCGTCCCCCGGTGGAAAATAATACTCaatagttcc
atttatactgagatggaaaaatcgtctgagacgTGATCTGTGGAGaagat
cctatttattgaaacataaatggaaagtacactcttccataatgctcatt
ttctaaattgctcgtctcagaGAAATTattcgtctcagtataaatagaac
taaTACAATTTTTCCCcgctaaaaataatcaaataaaaaaatcccttcat
tgcaaaatattgtgctatatTTTGATATCtcaactgattttttttttact
tcggAAAAGTGGAATTGAAaccaataaaaaactttcaaaaaaaccttctc
acagacccgatcGGATTAGTGGGGATAAACTCAGATTGGaaattcccata
ttttttatggctggggatttcaattcttttattctaaagtcagaaaattc
attggggataggaaaaatagcataatatatTTGCAGTGAGGGCTGGTTTA
ATTGATTCAGTATGGACAATAATTAGAGGAtcattttccaccggggacga
tatttcggccaatttttccagtgggtctgtgagaaggaggtgtcaTTAAA
GAATATGGGAATATAAATCTCTACTGAGTTACAGTCAGCAACACTGGGTG
AAAAACCCTACCAGGACTGTGAGAAGGGTCGTGTTTACTAACAGTATTTT
CATCATAAAGAAGTTTGAAATCATAGATGGGAATGGAATAGAGGGAACCC
TTGAAATGAAACTGCTGTCAAATTTTAAGAGCTACGAAATTTGAATAGTG
GAATAAAATGAATAGTGGATATTTTAAGGTGCgacttttgacaaaataaa
tatatacaatttaaaaaatttcatggtTCACATTTATATACAGACCTCAA
ATCTCAAATAACtctaaaatttcaactttttttaaagattgaatGAACTA
GACCCTAAATTAATTCTTAACAGAGAATATTTAAATCTAACATTATTGTA
TGACTGACTttaaattgtgtgtgcttaatACCCTAGAGCGTTATCATTGT
TCAGAAATGaacggagaaattttttttctaatactTTTCCTGCGCTTTCA
AGCATTCATCAgttagttaaaaaaaaactttttacaaacgACATTCCTAA
TGTATGAGTTCGATATACTGTATGAAAAAGTTTCTCCGTTCATTTCTGAT
CTATAAATCTAACATTTAAACATGCCAAAGAGACAAACTTTTGGATAGTG
TTGTGGTGTAGCCACCACGAAATCAATATAAAATCAATCTGGTGTGATAC
TTAATCTGGGAAACACCTTTTACACACCTTTCATGGGTTATTTCATTTGT
TGTTTTGTGTGGTTTCAAGTATTGGAAATTTGCATTTTCAGCAGAAATTA
TTTGGGATATTGAGCGAATTCTTTTAAAGAAAGCCGTTATTCTaagcata
gtccgtataaaaaaaccCGGTCTGGAGGCCTTtcgtttctttccattgtt
tcttacttgaacttgcgttgataAAATAGTTTGTtatgctcactttttga
tcatgtaattaaattttaaaCTCATCCCTaagtacttggtaacgtgatca
aaaactgaggaaatcaattctcattttttgataataacaaaagaaaaagc
taacaaaaagttaaaacaaaatGCTTACAGACCAGTGTTTTTCATAAGGA
CAATGTTCAAAGTTATGGAAATATAAAGAGGGAAAAATttaatattatat
tataatatatttatTGCAATGTATAATTATGTTgataaaattcctttttt
tctttgttatttaCAATTTATAATTTACAATACTTTTAAATTTCATAATT
GTGGAGAAAATAAATATAGAATTCTCTAAACCCCTTTTAAAAATACGCAA
AAAAATGAGAGCATTGCTGCACCCTTACGAGTTTTTCGGGATAATgtacc
cctgtttcacagccccgtTGGAATTTTTCCCATAGTGGGGATTAGAATCC
CTATCGgagtcccaatggggatagaagttGTGAGGCTGATATATTCTTCA
GATCAGGGACAAAATtttatagatttataaagcccaaagggtcagatgtc
gtgctttggctgaaaagtgtgccgaggttaggtaggaaatcctacctagg
tcacgtaaTATtagaatagaatttcagcgcttgaccaataagacgcttca
catgttttcaaaaacaataacagcgatattttttgtgatattcacttttt
tttgcttgttgcTTGTAAGAGCTGAAAGCACAACATCTGTGCAGtgaata
ttccaaaaaaaaagaaatccatAAACCGTCTGTACTGTATTTGCCGTATC
GTTGTGTCTGTGCATAAAAACAATGTTGAAACAAAAAgctattttttata
aattcatAAATTACTTTGATGTTGAAATAGGTACGACCGCAATGAATCAT
GAAAAAACAGGAACGGTGGCGCTTGATCGTAATAACGTCTTTTTATCAGT
CAGTCAGTTAGACAAGAAAGCTCTGCAGAAATCCAGACGCAGAAGAAGCA
GTTATCAAAGACATAAGtttaaatggggggggggggggttgttgGTGTCA
GGTAAAGTGTTTTTGACACACCCATACCCACGCCCACTTCTTTCTCCTAT
GGGAATAATATTACTTTTTACGGGGTAATCAGAAAACAAGATGCTTACCG
CCTGCGTACTATATCCGCTTTGCTTTACTATCTGTTAATTTCTGATTTCT
TCGTGGGATAAGTCTGCCTTACTTTtgagttaaaggttttatttttaaat
aagagtgatattgtttgcttgctcatcaattttaatttacaagctttttc
acattgaattgacacagatgtggagcaatgttggtcagaaagaggaaagg
aaaacataacataacataatataacaataggcaaacACTGtt
Run BLAST on NCBI

transcript from alignment at sc0000137:432948..438753+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00012102 ID=TCONS_00012102|Name=TCONS_00012102|organism=Clytia hemisphaerica|type=transcript|length=5806bp|location=Sequence derived from alignment at sc0000137:432948..438753+ (Clytia hemisphaerica)
GCTTAggcaaaaaataaacaaaacaaaacacaatgAAGATTAACGTGGTA ATAATGACCTTGATGACGTTCTATTTTACCGTCGCAGCAACAAGAGTGTA CAATGATGCTGGTGACGTACTGGAACGTCAAATAAATGCCAAAAATACAG TAAGTTGTTTCTTTGTAATGAATCGTAACTTGAACGATATTGATTTCTCT CAACATTGTATCGACTGTAGATAACTTGTTTCCTTTCATAGAAAAAAACG CGTTTGGTCTCTCCTTAAAGATAtggtggagtctctataactcgaacagg CACGGGGAATGtaaattagttcgaattaaagaaaattctagttatggagt aaagtttataagacATTGTTGACTGAAAGGACGATGGaaaacttgttcaa gttaaggagatattcgagttatggaggttcgaATTAACCCGCAGAGCGGG TCCCTCTGGGACCGAACCTTACCGGGCTATATCTCTGGAACTAAGAGGTT TCCAGAACTTTCGTAGCTACCATAGTGCGAAacctttgaatgtttttttg tctgggactgaaagggttaaagaGACTACACTGTATCATTTGTTATGATC AATATAAAGAACGTCTCTATGCATGCTGGTTAGACAgaataaacaataga atttctagaAATTTGTGCTCGTCCGGCAAAGTCGTTCTTTCTTTGTTTGG AAATAATGTGGAAGCAATTTGCAGAAGATATATACGTTGGTTGATGTCCT TTAAGCTTCGTGTtcgtcaaaaacttcaaaaaaaacaagaaacatATGAA CAGAGTCGAAAGTTCTTTTGATATTCTGTGGATACTAGTTTTTTTGGCAG TAAATCCaaacaggggggtggacgaacatttccagggggtaaccaGAAAA GAATTACCAGGGGGTATAacaaagtattttttcatttttccagggagtAA Aaggttatttcaaaatttccagggggcaaaagactgattttagttcgtcc accctcacttttaagatatgaaaataattttccagaggttcttttgcaaa ttttgacattttctagGGGTATTTGCgcatttctaaaaatctttctttgt tttgataaggttggtccacccccctgtatggaaattttatggaatTACCC AATTTTGAAACTCATACTACCATTCAGAATTAATCCTAAACTGCCTTCTG atttgaaagaagaaatttAAGTAAAAAGATTTCATGGATTTTGCCATCAA AATATACCGAAAATTGTAATCATTTTAAacgaatttattttgttttagaa aCGATACGGTACATTTTGTGATGAATCAAAGACCGTTTGTGGATTTCGAC ATTGGGGTAAAAGACAGATGGTAGgtctaaaaaaacaaatttaagaAGTC TACGCAATTCTAATtttataacagatcatccattcttaGCACACTATGCC ATTCTTAATTTATGGCGAATATGATCTGACTTAGTTATTcaaccaaaaca ttcgaaaccgCGTTGCTTTAAACCGAAAACAAAAAGTGACTATGTTCTAA TGTtagggtcaagctggagtttttacaagttctttgatgactctgttggt cgttaaatgttgagacaaacgattttattactttttctaaagaaagcgtc atccctattgtttaaaaataaccaatcagttaagcatcttgtaaaaattc CAAGTCATCCCTAATGTTTATGTTCATGATTGACCTTTGTGATGGTAAGA TTGTTTTACTTAACCAAATCTCTGCAGTCAAAACTCATTTGATGTTTATA ACAAATCTGAATAGAAAACATAAAAGTGGTCTGCCAACCTGGACAGATTT TTTTTACGGTGCAATGGTCCTTAGAGTGAATATGTGTCAGCGTGGATTAA TCAGAATCTGCTCGTAAATGCGTTTAATAGCAAATAATGTTTCCttaggc tcttccagaaaattttcgtccatggggATGGATGGAGCATATATTTTCCG GAGGGGGTCAAATGATGTTTGTCTTGGGGCGGGGTAGATCTGTTGTCTat ggggtcaaaagtcacaatgtccaggggtaaatttccaaaaaattgtaTAT CACCACTCCCCGTATTCAAATCTTTTCTGGAAGTGCTCcttgcaaaaact tttaaaCCTACGGTTGGTATATAACTAAGTATTCAAATACGGAACagtat tttaaaaaattcctcgaCTTTTTCATCTTTCTCAGGTTCGTGGAGGATTT TGTAATTCCGATCGCACTATCTGCAAAATCTTTGGCAAACGTGCTCTTTC caatcatcttcaaatttgTTTGAATAAATGCGGACGTCAGCTATATATGG TCTTTCCAAACTGCGTCAAAAACTGTCTAGCAGCTGGCATGAAACTATGA TTCGTTTTGATAATGCTGATTTAACCTaggaatagacgatatcggcttca catgaaaagtcagatttgacccccgataattccccacaatgctttgtgcg ggaaaaatttcaccgtgaacttttttccgccaaagcattgtgggcaatat tcgggggtcaaatctgagttttcacgttaagccaaTGTCGTCtattatta tacactggattaCAAGTAGCTGATATTTGcagatttctcatgttctagct atgtccgcagtaatgatagtTCACTCTCCTTTCCCTCAACAAAGgatttt tcaaagcattttaattgcttttttatcgaaattcaatcaatcaattcaaT CCCAAAAGAGCGCTTGGCAATGGCAATGAGTCGgttatccagtgtctata ataattcttTGATTTAAATAACacgcccttctcacagacttgGTGGGACC CCctcccattggaaaaattggccaaactATCGTCCCCCGGTGGAAAATAA TACTCaatagttccatttatactgagatggaaaaatcgtctgagacgTGA TCTGTGGAGaagatcctatttattgaaacataaatggaaagtacactctt ccataatgctcattttctaaattgctcgtctcagaGAAATTattcgtctc agtataaatagaactaaTACAATTTTTCCCcgctaaaaataatcaaataa aaaaatcccttcattgcaaaatattgtgctatatTTTGATATCtcaactg attttttttttacttcggAAAAGTGGAATTGAAaccaataaaaaactttc aaaaaaaccttctcacagacccgatcGGATTAGTGGGGATAAACTCAGAT TGGaaattcccatattttttatggctggggatttcaattcttttattcta aagtcagaaaattcattggggataggaaaaatagcataatatatTTGCAG TGAGGGCTGGTTTAATTGATTCAGTATGGACAATAATTAGAGGAtcattt tccaccggggacgatatttcggccaatttttccagtgggtctgtgagaag gaggtgtcaTTAAAGAATATGGGAATATAAATCTCTACTGAGTTACAGTC AGCAACACTGGGTGAAAAACCCTACCAGGACTGTGAGAAGGGTCGTGTTT ACTAACAGTATTTTCATCATAAAGAAGTTTGAAATCATAGATGGGAATGG AATAGAGGGAACCCTTGAAATGAAACTGCTGTCAAATTTTAAGAGCTACG AAATTTGAATAGTGGAATAAAATGAATAGTGGATATTTTAAGGTGCgact tttgacaaaataaatatatacaatttaaaaaatttcatggtTCACATTTA TATACAGACCTCAAATCTCAAATAACtctaaaatttcaactttttttaaa gattgaatGAACTAGACCCTAAATTAATTCTTAACAGAGAATATTTAAAT CTAACATTATTGTATGACTGACTttaaattgtgtgtgcttaatACCCTAG AGCGTTATCATTGTTCAGAAATGaacggagaaattttttttctaatactT TTCCTGCGCTTTCAAGCATTCATCAgttagttaaaaaaaaactttttaca aacgACATTCCTAATGTATGAGTTCGATATACTGTATGAAAAAGTTTCTC CGTTCATTTCTGATCTATAAATCTAACATTTAAACATGCCAAAGAGACAA ACTTTTGGATAGTGTTGTGGTGTAGCCACCACGAAATCAATATAAAATCA ATCTGGTGTGATACTTAATCTGGGAAACACCTTTTACACACCTTTCATGG GTTATTTCATTTGTTGTTTTGTGTGGTTTCAAGTATTGGAAATTTGCATT TTCAGCAGAAATTATTTGGGATATTGAGCGAATTCTTTTAAAGAAAGCCG TTATTCTaagcatagtccgtataaaaaaaccCGGTCTGGAGGCCTTtcgt ttctttccattgtttcttacttgaacttgcgttgataAAATAGTTTGTta tgctcactttttgatcatgtaattaaattttaaaCTCATCCCTaagtact tggtaacgtgatcaaaaactgaggaaatcaattctcattttttgataata acaaaagaaaaagctaacaaaaagttaaaacaaaatGCTTACAGACCAGT GTTTTTCATAAGGACAATGTTCAAAGTTATGGAAATATAAAGAGGGAAAA ATttaatattatattataatatatttatTGCAATGTATAATTATGTTgat aaaattcctttttttctttgttatttaCAATTTATAATTTACAATACTTT TAAATTTCATAATTGTGGAGAAAATAAATATAGAATTCTCTAAACCCCTT TTAAAAATACGCAAAAAAATGAGAGCATTGCTGCACCCTTACGAGTTTTT CGGGATAATgtacccctgtttcacagccccgtTGGAATTTTTCCCATAGT GGGGATTAGAATCCCTATCGgagtcccaatggggatagaagttGTGAGGC TGATATATTCTTCAGATCAGGGACAAAATtttatagatttataaagccca aagggtcagatgtcgtgctttggctgaaaagtgtgccgaggttaggtagg aaatcctacctaggtcacgtaaTATtagaatagaatttcagcgcttgacc aataagacgcttcacatgttttcaaaaacaataacagcgatattttttgt gatattcacttttttttgcttgttgcTTGTAAGAGCTGAAAGCACAACAT CTGTGCAGtgaatattccaaaaaaaaagaaatccatAAACCGTCTGTACT GTATTTGCCGTATCGTTGTGTCTGTGCATAAAAACAATGTTGAAACAAAA AgctattttttataaattcatAAATTACTTTGATGTTGAAATAGGTACGA CCGCAATGAATCATGAAAAAACAGGAACGGTGGCGCTTGATCGTAATAAC GTCTTTTTATCAGTCAGTCAGTTAGACAAGAAAGCTCTGCAGAAATCCAG ACGCAGAAGAAGCAGTTATCAAAGACATAAGtttaaatgggggggggggg ggttgttgGTGTCAGGTAAAGTGTTTTTGACACACCCATACCCACGCCCA CTTCTTTCTCCTATGGGAATAATATTACTTTTTACGGGGTAATCAGAAAA CAAGATGCTTACCGCCTGCGTACTATATCCGCTTTGCTTTACTATCTGTT AATTTCTGATTTCTTCGTGGGATAAGTCTGCCTTACTTTtgagttaaagg ttttatttttaaataagagtgatattgtttgcttgctcatcaattttaat ttacaagctttttcacattgaattgacacagatgtggagcaatgttggtc agaaagaggaaaggaaaacataacataacataatataacaataggcaaac ACTGtt
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_006805XLOC_006805Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00012102-exon-sc0000137-1491911889:432948..433096TCONS_00012102-exon-sc0000137-1491911889:432948..433096Clytia hemisphaericaexon
TCONS_00012102-exon-sc0000137-1510915933:432948..433096TCONS_00012102-exon-sc0000137-1510915933:432948..433096Clytia hemisphaericaexon
TCONS_00012102-exon-sc0000137-1575043694:432948..433096TCONS_00012102-exon-sc0000137-1575043694:432948..433096Clytia hemisphaericaexon
TCONS_00012102-exon-sc0000137-1491911889:434246..434317TCONS_00012102-exon-sc0000137-1491911889:434246..434317Clytia hemisphaericaexon
TCONS_00012102-exon-sc0000137-1510915933:434246..434317TCONS_00012102-exon-sc0000137-1510915933:434246..434317Clytia hemisphaericaexon
TCONS_00012102-exon-sc0000137-1575043694:434246..434317TCONS_00012102-exon-sc0000137-1575043694:434246..434317Clytia hemisphaericaexon
TCONS_00012102-exon-sc0000137-1491911889:435183..438753TCONS_00012102-exon-sc0000137-1491911889:435183..438753Clytia hemisphaericaexon
TCONS_00012102-exon-sc0000137-1510915933:435183..438753TCONS_00012102-exon-sc0000137-1510915933:435183..438753Clytia hemisphaericaexon
TCONS_00012102-exon-sc0000137-1575043694:435183..438753TCONS_00012102-exon-sc0000137-1575043694:435183..438753Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000137supercontigsc0000137:432948..438753 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values :
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.00995877 0.00974339 0 0 0.0139687 0 0.0780633 0.120618 0.440767 0.459873 0.223645 0.589487 0.0413281 0.0070953 0 0 0.06374 0.235818 0.0710917 0.142092 0.777621 0.635724 0.0597562 0.229908 0.0853225 0.154644 0 0 0 0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00012102 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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