TCONS_00012109 (transcript) - C. hemisphaerica

Overview
NameTCONS_00012109
Unique NameTCONS_00012109
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length3715

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00012109 ID=TCONS_00012109|Name=TCONS_00012109|organism=Clytia hemisphaerica|type=transcript|length=3715bp
GAAAATGACATAGTTTGGAGTCgatgtaaaaacaaaaaagcaatATGTAT
AACGGTATTGGAGTGCAGACTACTCGTGGTACTGGTACTAATGGTTATGT
AACACGTAACCTATCACATATCAATCATTCACGAAAAGACAATAAACCCA
CCTATGATTACAATGATACAAGTCTGCTTGGAGGATTTGAATCATCATTA
GTGAAGAAGCCAAATAAAGATATCCTTGATCATAACAGGAAAAGAAACAT
TGAAGTCAAATGTCTCGAACTCCAAGAAGAACTGGAAGAAGAAGGcGGTC
TAACAGCTGAAGAAATTGAGACTAAAGTTTCAGAATACAGAAAAGAGCTG
ATGGATAAAGCAGGACTGTCAAAACAAGAGGAAGTTCAGCCAAGTATGTC
TGGATCGCACGAAGTAGCCGAGGCTAACGAAGCAAAGAATTCAAAGATGA
GAGATGCCTTTGGTATAAAGAATGATTTTACGGAAGGAAGTTCATTCAAT
GAAGAGCATCAAAAGCAAAGACGTGAAGAAGAGGAAACTGCCAGAGAAGA
aaagtataaagaaaaacaattgaGAAGGGAAGAAGAGAGGAAACGTGAAA
GAGATAGAGACAGCGAACGGGACAGGAGAGATAAACGGAGAGATGATTCT
GAAGAAAGAGAGTCGCGTTCAAAACGCCGACGAAGAGATCACTCGCGCGA
GCGCTCTCAAAGCGGCTCAGacaaagaaaacgaaagtagtaggtccaaaa
agaaaagCGAGCGACGGAAATCAACATTAGTGGACGATTATGCATCGTCA
GCAGAAGAAAAGTCGCCCCCAAGAAATAAAAGTCGCAAAGATGTGGAGCC
TGGAGATATGAGCGATGAAGATTACGCAGAACGCAGACGAAAGCAACGTC
GAAACAGTCGACATTCCGAAGAAAGGGAGAGAGACGAacgaaaagaaaag
aagaggtACGAAGAGGAGAAAGAGGAACAACGCAGAAACGAAAAGAAGAA
ATCCAAACGACACGACAGTGAAGATGAGGCCGAAGAGACGAAGAGTCGTG
ATAAAGAGGAGAGAAGAAAAAGTCGCCATTCTGCTGTTGAAGAGGAGGAC
AAAGAATCTCGACGTGAACGGCGCAGAACGCGAGACGAACGCAGCGACGA
CGAACGAATTGAACGAAAACGCTCGAGAAAAAGTCGAGATGAGCGAGAAG
AAGACCGAGAATTAAAATCCcgcgacgacgaacgaaaagaACGTCGTAAG
GAACGAGAACGCGAAGTGGAGCGACGTAAAGAACGGCAGATGGACGACGA
TAGCGACACAGAGAAACATCGCCGTAGACGAGAACGTCGAGAGAGACAAC
AGAGCCCGGCTGAAGTGGATGATAGTAGAAGTCGCGAGAGAAATCGAGAA
AGAGAGCCGGACCGAAAAACGGAGAAGAAACGAGAACGTAGCCGAGAAAG
AGAAAGAAGTCGTAGCCTTGATCGATCGCGTAGAGAAAGAAGTCGAAGCG
AGGACCAATCTCGCCGTGAAAGAAGCCGTAGCAATGAGCGTACCCGTCGA
GACAGAAGTCAAAGCAACGAGCGATCTCGTCGCGAACGGAGCCGAAGTAA
CGAACGCGTAAGTCGTCGTCGTTCAAGAAAAGAAGGTTCGGTTGACGAAT
TTGGTCGTTCCAAAGATCGAAAGCAAACAgaggaaagaaagaaaagaaat
gttGAAGAGGACGATCCGAAACAAAATGGTCATCACGAAGAAGAGGTTGA
ACGTTCTCGTTCAAGAAGAAATCGTACGGAGCGTGATGCAGATGTTGATT
CTGCTGATGACAGCAAAAAGTCACGAAGACGTAAAGAACGCCACGAAGAA
GAGAACGTTGAAGAACGCCGAGAACGTAAGAGAAAAACGTCAGTCAGTGA
AGACACAAGACGTGAGAGAAGACGTAGATCTCCGGAAAGTGAAGTTAAGA
GGAATCGTTCACCTGCGGAAGATGACGAGAGAAAGCACAGACGCCGTAGA
TCACCTTACGAAGAGCCCCAAAGACATCCCAGGTCGCCTTCCGAGGAGCC
ACCAAGACGTACCCGAGAACGTGACGCATACGAAGACAGGGAAGAGAATC
TTAACTCACGACGTCGTAGTCCAGAAGTCACGAAAGACGAATCTGAGCTT
TACGGACAAGATTTGCCGGTACGCGAGTTTGGTTACGACGGTTATGCAGA
GAAAAGAACCAAAGGGGAAGGTAAAAAGACATCTCTTCTTTACACTGACG
ATATGATTCCACCTGTCGAAGATGTAGTGCAGACTCTTGAGGACTATGAT
ACTTTATTAGCCAGCAAAGAAAACTCTGACATGGACATATCCGACGCTGA
CGTACCGGCTACGAAGTCCCCAAGCCAGATATCATTACACGCTGATGATA
GCCCTAGCCGTGCGATTGAGGAAACGAGAGACCGCTCGCGAACCAAATCT
AAACCAGATAGTAAGAAGCAGAAGGATGGAGTTGAGAAAAGCAGTAAGAG
ATCATCCACAGGTAAAGCTGGCAAGGAGAAGAAGAAACGTGAGAATTCCG
TTGACGTGGACGCTACTGAAGAAGTAGAGAAGACGCAACAACGTATCGCC
GAACTGGAAGAAATGTTGCGACTTGAACGACTGAAGAAGTCCAGTGGTAA
GAAGACAACTTCACCAAAAAAGAAGAAGCGATCTTCTAAAGGAGAGGAAG
AGGAAAAAGCGAGCAAAGGGAAATCaaagaagaaacaaaagaaagaggaa
TCAAGTTCTGACTCAGAATCTGAAGATGATTCTAAGAAGAAGAGTAAATC
GAAGAAAACACCATCGAAAGACAAACGCCGAAAAGCTGCTGAATCTTCAG
ATTCTAGTGATAGTGAATCAGACGAAAGTGGTCGCGAGTCACGCAAAAAG
AAAGCATCTTCCTCAAGCAAAAAGGTcgtaaagaataaaaagaaagatgA
AGAAGTTGACGCTAAATCcagcaaaaaacgaaaacaaacaCAAAGTGACG
ATGAGGACGAAGCCAAAAGCAGTAAAAATAAATCCAAAGCTAAAGCAAAG
AAACCAAGTCAAAAGAGTAAAGCATCAAACCGTAAGAAGCGAGACGACAG
TTCAGATGACGATGAAGAAGAACGTCCAAAAAAATCTTCAGCCtcaaaac
gaaaacgaaagcgaaagtactCATCAAGTTCATCATCGAGCAGTTCAAGT
GAAGATTCATCCACAGAATCTAGTTCGTCATCCGGTGAATCCAGCAGTTC
CGAATCGGATTCATCTTCGTCCGATTCTGATTCATCAAGTTCTTCCAGGA
GTCCGACTCCGGAAAAGAAATCACGGAAATCAGGATCGTCAAATAAGAAA
AATCGCAAAAGGAAATCCTAAGAGGAGATCATGAACCACCTTTAACGATA
GAGATTGTGAagacaatgtttttattttggtcTATGCCAAGTTGTGGATA
ATGATTTGGCAATGAAGATGGCTCTTGGAGAAATGAATTCCTTTGCTATG
AAAACATTCAACCTCAAAAAGAGACTTTTTAGAGacttgttttttaaaga
ttatccATGTATatacgaagaagaaaaaagattgGATCCAGACTAACAGA
CTTGATGAAGTCGATAAAATCTAAcatgaatattttgtttttaaattgac
aaTGTACAACTTTTATATCTTTTTGGGAAAGGATCAGGTTTATTACTCTG
AATAATCTAATAATG
Run BLAST on NCBI

transcript from alignment at sc0000137:66496..78635-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00012109 ID=TCONS_00012109|Name=TCONS_00012109|organism=Clytia hemisphaerica|type=transcript|length=12140bp|location=Sequence derived from alignment at sc0000137:66496..78635- (Clytia hemisphaerica)
GAAAATGACATAGTTTGGAGTCGAGTGAGTATTCGATCACTGATAAAATC
AATATATTTATCAATCATCATTGATTTCTTCAATCACAATTGAACGTTCG
ATTAGTACCGTCTGGTCTAGTAATCCAGGAGTATTGAATCGCCATTTTGT
TGTGTTCAATTTATTTCCTCTTTCTGTTTTCTCTCAAACAAGATTGTTTT
TAAAAACTTGCCTTATAAGTTGGTCTAAAATGTGTCAACATCCCTCTTCT
AATTTCAACATATCCCTCTCTTAACACTTTTTAGACCTTCCTATTATTCC
TATCTCTAAAAAAGGGTGATGAAATGTTGACATTACATAGGTTCAGCCCC
CCCTCTTATTTTTTTTTTTTGGGGGGGGGGCTAAGAAATATTTTGGCCTT
TAAAGAGCCTGGGGGCTAAAATTACCAAAATATTTGGGGGGACCTAGATT
GTTGGGGGAGCCTAGATGATCTGACTGAGACTGTGGGGACTGTTCAGTTA
AATTCAAAAGATATCTTATCTTACTATTAAATCAAATACAAAAAGCAAAC
AAAACAAAAAGACTTGTAAACATAAATATTCAAACAAGTAAAATTTAGTT
TTCATTTATCAGTACTGTACTTGCATATATTTTTTATTGACTTCTCTCTA
CGGGGGCAGGAGAACAATGTTTTTTTTGTTTTTGTTTATCTTGGGACCTG
AAGTGTTAGGGGACCTGAAGTGTTAGGGGACCTAGCACAAGGCAATTTTT
TAGGGGGGAGCTAAATTGTCGGGGGGACCTTACTTTGTTGGGGGGAGCTA
GAAACCTGGCTGAAGCTATGCATTAGACAAACTTACAGTACTCTAGATCT
TTACTTTGTTTATAAACGGAAGAATTCAGGGGCAATAAAGGTTGTTCTAC
CTATTCTGATTGTAAACATTTGATAATAGACCAATCAAATCATGGAGTTA
ACAATGATTAGCAGCTTGTTTGTCCTAATGGTCACAGTTAAAGCTTTCTT
TTACCTAGCCTTGACCATAATATTTAAAGATCTCAAAGTGTAGTGGCATA
GCGTATTAGCCTTGATGATATACATCCTTATAGTATGGACATCAAGTATG
GCATTTGTGTAACTAACACCAAAGATCTTTGGCGTGAGAGACAAACCCTT
TTTGGCGTATCAGCGTGTAGCTTAATAAGGAAAGCTAAGGTCGACGTAAA
AAATATACTTTCGGGCATGAAAGTTAACAGTACTCCTTACTCCAGTGATC
CAAAGTCCTCATCCATAGTAACACTATGATTTTTAACTCATTTTGCTTTG
CATCGATGAATATTACCCACCTCAATATCTAATGATATTCCATGCAATAT
CTGCTTGATATAGTCAAAATATAAGTCTAAGGAATTTATTATCTTAAAAT
TTTTTCAGTGTAAAAACAAAAAAGCAATATGTATAACGGTATTGGAGTGC
AGACTACTCGTGGTACTGGTACTAATGGTTATGTAACACGTAACCTATCA
CATATCAATCATTCACGAAAAGACAATAAACCCACCTATGATTACAATGA
TACAAGTCTGCTTGGAGGATTTGAATCATCATTAGTGAAGAAGCCAAATA
AAGATATCCTTGATCATAACAGGAAAAGAAACATTGAAGTCAAATGTCTC
GAACTCCAAGAAGAACTGGAAGAAGAAGGGTATGAAACACAGATATATCT
TATTCAAAACACTAGAAAGGTTACTCTGTCTTTTCAAAACCACATCATTT
GAAGTAAAATAATTTGCCAACATTACAAAACAAAGTAGAGACCTCAATTT
GGTGCTAGCAATTCGTGCAATCAAAACATTATCAAGTCGCTTTCTTCCTA
ACTTTTAAGAGTGTTTCTACGCTCACTTTTATTAACTTACCTCTTTCTCT
ATTACTGTAACGAGTTGTACCAAGGCCACGTTTATCTATTTGCTTTCTGT
GTAACTTTCAAAAGCTAGCTTCTTAACGAGGTTAGAAAATATATTCTGAT
AGTTACTGATTGATAACTAACAATCAATAGAATACTGTACTGGTGAGAAG
GAAACTCTGTTGATTTTTGGCGCTACTTCAAAACCTCATGTTTATGTTTT
TTCCTAAATTTTGATTTATAGCGGTCTAACAGCTGAAGAAATTGAGACTA
AAGTTTCAGAATACAGAAAAGAGCTGATGGATAAAGCAGGACTGTCAAAA
CAAGAGGAAGTTCAGCCAAGGTACATCTTTTTTTTCACAACAAGCAAAAA
TATATATACATGATGCATTTACTCATTGTATTGTGATGAATTTGCTTTTA
AGATACGTTTGGTCAAGAAGTTGTCAAGTTGTGAAAACTTGAAATTACAA
GTGATTTTCCAAAAGTGTAAAAATAAGGGTATCAAATTATTTGCTAGTTA
TTTTGGGGAATTTCATCTGTTGCTACCCGGTAATATATCACAATGAAATG
TTTTCAACTTTGCAAAACAAATTTTGATTTCAAAGTTTTCTAAAACCACT
GGAATAATCCGAATCCACGGAATAAGGAAGAAAAAAACTTTAAACTCCAT
TATCTTTTCTTTTCAAGTATGTCTGGATCGCACGAAGTAGCCGAGGCTAA
CGAAGCAAAGAATTCAAAGATGAGAGATGCCTTTGGTATAAAGAATGATT
TTACGGAAGGAAGTTCATTCAATGAAGAGCATCAAAAGCAAAGACGTGAA
GAAGAGGAAACTGCCAGAGAAGAAAAGTATAAAGAAAAACAATTGAGAAG
GTGAGAGTCTCTTAGATTTGATTTGGTATTATTTTGATTTATCTTTTTTA
AGATTTTCTTGAGTGAACAATTATGAGCTAAATATTAATGATATGCACCA
TTGCAATGTCTTCCACGAACGATTGGTTGAAAGTGACGTATTGACTGATT
TTACGTCACTTATTCATGATATGCACCATTGCAATGTCTTCCATTCCACC
CAATAGCTGATTGGTTAAAAGTGACATATTGACTGATTTTACGTCACTTA
CAACCAATGAGCTATTGGGTCCATGATGTAATGTCAGAAGACATTGCAGT
GGTGCATATCATGAATAAGCAATCAGCTATTGAAGACATTATGAATTGAG
TATTTCCAACGTTACTTTTTGTTTTTACCCATTCTACTTGATATTGAATG
ATTAAATTGACTCATGACAAAGGTACATGTATCATAATTGATTCTTTCTG
TTTGGTTTACTTAGATAACCTAACAGGTAAGTAGAAAGGTAAGTTCTTAT
TTAAGAACGTAAGTGACCCTGGGGACAGCCCCAAAAGCACAGTAGGAAGT
AATATGCTGTATACCTTTTCCTTGTCCTCTATTTTTCACTATTCATCCTC
CAATGAGCGTAAAATAAAAAATAATTGAAAAACAGAAGAATTGAAGAAGA
AAAACTGTTTATTTCTTCTAACATAGATTTGAAAAGAACAGTGCCTTTTT
AAATAAGGGCAACACTCTTAAGCGACACCTAGAATCTTGAAAATTTAAGA
GCACCACATGACTAATTGAACGTTCTTATTTTTAAAGTACCGAAGCTTAT
TTCATCTCCGAGGAGGGCTTACACTTATGGTTTTTTAAATATTTATTTAT
TGAAAATTGATCTATATACACAGACAGTCAGAAAGTTTATCATAGCATCT
TGGTAAAAAGAAAATTTGAAATGCTGCATAGTGTACAAACAATTTAAATT
TTCTCTAATTTTCTTTTTACCCTGGTACTCTATAATCCAGATAGAAAAAT
ATAAAACTTATAGACTACTATAAAAGATTCAGAATTCCCAGTTCTCTTCC
CCAAGTGTTTTAAAAGTCGTTGCTTAGTTTTGAGCCCAATGTACACTCCT
TTCTAAAAGATATTAACCTGAATATGTCATTTTTTCAGCTATGAACATGG
AAAAGAAAATCTCTTCTTAAAATGCAATGTGTTATTGATGTGAAAGAACA
AATGAGAAAACCATTGTTGGCTGTTGTTGTTGTTGTCTTTCCTCTGTTTT
CAACGCTCAATCCCCTGATAAAGGGCCTATGTTTTTCCTAACCATCTATC
AATCGGTGAGTTGATTATTCCTTATGCTTTTGCTTATAAAGTTAGGCAGA
AAATTATTTCATAGTTGAAGTTTTAGTAGATTGAGTTCTTCACTAGGCTT
GTTCTTTATAAATTTGGATGATCATTTTGCAAGATTCCTCGAAGCACCAT
AAAAAAATGTAATACTTTTGGTGTTTGCTCATATTCTACAAAAAAAGCCT
TGATTCTAAAAAATTCCCGCTATTTCTGTCAACAAAAAAGGTCGAGTGAT
GATCCATTTTATCTAACAATCCATTTTAATTTAATAATAATGTGGCCGTT
ACTACTACTAAAAGCAATATCGATTTTTTTTCAAATTTTTGAAAAACACT
GTTATATTTTGTAAGATTTTCTCTATAAAGTTTAATTTAAAGCGGGACTC
GTGTTTTTATAATATGTTTTACTGTTAATACTACCTGCGATTTGTATAGA
AAAATTAGTCAGACTGCAGACTATATGATTTAGTGCATTAAATGGTAGTA
AAAGCGAGTTATTTATAAAACCAAAGCTATGCAGCAAAATAATTCGTTTT
CACTACCATATGATGTATTTTCGTGTAAGGATTGCAGAGTTAAGTTATTT
GGTTTCATTGAAAATTTTAACCCGCGATTTACTATTTACCCTCTTTCGGG
CTAATTTTTATGATTGTGTTTTTTTTATGAAAGGTTTAGGGTGTCATGTC
TTGAAATACTTAGAATTTTCATATAAAAGATAAGTTGTTTCAACAAATGA
CTTAAAATCCAATGCCCTTTAAGTTTTAATGATTGATAAAATCTAGCTGG
AGCAAAGAAAACAGGTCGAAAACAGGTCGAAAACAGATTTCGTTTTCTGC
ATAGGCATACAAATTATACGTCGTTTTGTATATCAGTCCATTTATAGGTA
TGCTTGACAAGAAAATGCTTCATGACTTTGTCAAGATATGTTTAAAAAGT
CACTTGAACGGGTCTTAAAAGAGTTTGCTAGTTTACTGCCTTGATTTTTG
AATGGTTTTAGATAACTTTGAAAAACTTTGCTGTTTGAAAGGATTGATAC
TATGTAAAAACTCTTTTTGTTTCGTTATAGGGAAGAAGAGAGGAAACGTG
AAAGAGATAGAGACAGCGAACGGGACAGGAGAGATAAACGGAGGTATTTA
TTTCTCATCACAAAAGTGTTAGTTTTCTCATTATGTTTAATAGTACACTA
TAAATCATGGGATCACTCCTTGTAAATCCTCCTTTAGCTAGACATCCATT
ATTTGGCTTTGGGGGCAAACAAAAAATTACCATCTTAATTGGGGGATTAT
GTTGCATTATAAAGGACTAAAATTAGTACGGTATTATTTGGCGGAGAGTA
CTGACCAACCTAGATTTTAGAGAGTATAGTCCAGAGAAAGTGTGCTAAAA
ATGAATACAATTGTGCATTTTTGACTAGAAAGCATGAAATTTGGTACAGT
GGTACCTTAGGGGGTAAGAAACATTTTAAGCCTCTGACCCACTTCCGAAA
CACCTGTTTGTGTATTTTACAGACCAGAATGCCTCCCAGCCAAGAAAAAA
AGTATTGTCTTCAAAACATGTCATATGATATATCGTTGGAAAGGTTTTCT
CACACTGATTCTAAAAAACATCACAACATATATCTGAAAATGGACTGGGT
CCGAGTTATGATATGCAAAAAAGCCATAGGAGTAATTTACAGACCGGAAC
GGCTCCCGGGCATACAAAAAATATTTTTATCTCCAAAACATGTCATGTAA
CAACATAAACATAACAACATGTATCTGAAAATGGACTAGGCTCGAGTTAT
GGGCCAGGAGCCATTCTGGTCTGTAAAATACTCCCATGGCCTATAACTAA
ATACCAAATTTCATGCTTTCTAGTCAAAAACGCACAATTGATGCACACTT
TCCCTGGACTAAATAGCTCTTACAAATAGAACGATTTACAGTTATTTTTA
AATACTTTTTGCCTGACGTAAGGATTAAAAGATACATCCTTTTTGTCTGT
CCAATTTTTTTCATCCATTAAAACTCTTATTGGAGATTTGGAGTGTTGAT
TGACAGTGTGTTTACTAAAGCATGGTCTGAAAACTAACACTTGAAATTTA
AAAGTATTCAACAGAGTTTCTAATAAAGAAGTATTTTTTGACAATAGCTA
TGTTCATTAAGGACGGCCTTGCTAAGGCACACTTCTTCTAGATTTATCAA
ATTATACTAGAAAAGTGAACCTCTTCAGTGATACCTTCCCTTTTAGAGGG
TGTTCTGAAATGATGACTCACATTAAAACTAATATGGCAAATAATAGTTA
AAAAATAGTCGCCGAGTAGGGATAGTACTCGGACGGGGGACCGCCCGAAA
ACTGACGGTGTCGTAGACTTTTCATGATTTTTTCCCATCTGTGGTTTATC
CTTTCATGAGTAGAGCCCAACTATCACTTGTAGTTTATCATTTTACATAA
CACATTTTATTTGGGATTTTCTAGAGATGATTCTGAAGAAAGAGAGTCGC
GTTCAAAACGCCGACGAAGAGATCACTCGCGCGAGCGCTCTCAAAGCGGG
TGAGTCGATTTTCAATTTGATTTAAATACAGGGTTTATCAAAATCATAGA
TATTATATGATCTCAACTCCTATCAGAGTCTGAGAGAGCTTGAAAAAAAA
TATTCTCTAAGAAATTTAAGAAATATGCCTTTTAATTGAGGAATATTCTA
TTGACGTTTTGATAGACCCTGTAGCAAACCACAGGTAAGTCAACAGATTC
TTTCAAATTTATGGTAAGCGTCCTCATGACGCCATCAAGATCCGGTAAAC
TGAGTTTGAGTAAAAATAGTTATGCGTAAGCAAGTGTAAGTATGCTTTAC
CAATAAAAAGAATCTTCAACGGTAGTTCAATCTTTATTAATTCCAATTTT
TGATTTTTGTTTTCCAGCTCAGACAAAGAAAACGAAAGTAGTAGGTCCAA
AAAGAAAAGGTATGTTTTTTTTGTTTCAATTTACTGCTGTCATTTTAGTT
GTTACAAAAAAGCATCTTTTCCCTAAAGTTCANATTTTTTCTTTCAATCA
ATTTACCGCTGTCATTTTAGTTGTTGCAAAAAGGCATCTTTTCCCTAAAG
TTCAAGGGCTGGGGTATTCTATGTATGGTTGAGAAACTCGGTGGTACGTT
GTGTATAGGATCTCCTACTCACAGACTCAAATGAAATATACCCAATGGAC
TTAACAAATTTTCACTTTTTGATATATGGTGGACAAAGTACATACTAACA
ACCTGCGAGCTTTTTTCTAGAGAAATCTATTCCTTTAGTTTTTGGTTAGA
CTTCGCTCATTTACATATCAGTATATTTTGGCTTCTCTTTTAGCGAGCGA
CGGAAATCAACATTAGTGGACGATTATGCATCGTCAGCAGAAGAAAAGTC
GCCCCCAAGAAATAAAAGTCGCAAAGATGTGGAGCCTGGAGAGTAAGTTA
CCTAGCTAATTTCCTTCTTAGTGTGCCAATTTCTTCCATCATAAGATGAG
CTCAAAAAGTGGCGTTTCTGTACTAAAATCTGAATAATCGAGTTGTTGTG
GCTGGTGCGCGAGATGGTCTTTCTCACATTTCGACCCTTTTAAAATATTC
CCCTTTTGACGCTCGAAATTACAAAAGAACTTCATAAATTAACTCAGTTT
TAACCAGAATAAAAGGTTTCGAACAATGACCGAGTGAAATTCCATCTAAT
ACGCTTAGTATGATGAAAATAGCAATTCTGATGACACCTTTGAAATGTCT
GATTAGATCTGATAGATCTGGAAGTCACAATTCGGAACTTCAAGTGTCGC
ATATCAGCCATTGATTATGTTATGTGAATGAACACTGATTTCAATGGTTT
AATGCTGAAACAGTAACAACTTTAGTCAATCTTTCCTCTCTAGTATGAGC
GATGAAGATTACGCAGAACGCAGACGAAAGCAACGTCGAAACAGTCGACA
TTCCGAAGAAAGGGAGAGAGACGAACGAAAAGAAAAGAAGAGGTACGAAG
AGGAGAAAGAGGAACAACGCAGAAACGAAAAGAAGAAATCCAAACGACAC
GACAGTGAAGATGAGGCCGAAGAGACGAAGAGTCGTGATAAAGAGGAGAG
AAGAAAAAGTCGCCATTCTGCTGTTGAAGAGGTTTTGTGTGTTTTCTGAA
AATCTTCTGCTCAGAAAAGCCTTATATTTGATTTTCATATCTAATTTTTC
TCCCTTTTATTTCTAGTACAAAGATGTTTTCATTTGATCCAGTGATACAC
CCTAATAACCTGGTATTACAACAAATTCGATTTACTTACATATTGATTGA
ACAAAAGTTTTACTTGTTTTTGCTTATTAGGAGGACAAAGAATCTCGACG
TGAACGGCGCAGAACGCGAGACGAACGCAGCGACGACGAACGAATTGAAC
GAAAACGCTCGAGAAAAAGTCGAGATGAGCGAGAAGAAGACCGAGAATTA
AAATCCCGCGACGACGAACGAAAAGAACGTCGTAAGGAACGAGAACGCGA
AGTGGAGCGACGTAAAGAACGGCAGATGGACGACGATAGCGACACAGAGA
AACATCGCCGTAGACGAGAACGTCGAGAGAGACAACAGAGCCCGGCTGAA
GTGGATGATAGTAGAAGTCGCGAGAGAAATCGAGAAAGAGAGCCGGACCG
AAAAACGGAGAAGAAACGAGAACGTAGCCGAGAAAGAGAAAGAAGTCGTA
GCCTTGATCGATCGCGTAGAGAAAGAAGTCGAAGCGAGGACCAATCTCGC
CGTGAAAGAAGCCGTAGCAATGAGCGTACCCGTCGAGACAGAAGTCAAAG
CAACGAGCGATCTCGTCGCGAACGGAGCCGAAGTAACGAACGCGTAAGTC
GTCGTCGTTCAAGAAAAGAAGGTTCGGTTGACGAATTTGGTCGTTCCAAA
GATCGAAAGCAAACAGAGGAAAGAAAGAAAAGAAATGTTGAAGAGGACGA
TCCGAAACAAAATGGTCATCACGAAGAAGAGGTTGAACGTTCTCGTTCAA
GAAGAAATCGTACGGAGCGTGATGCAGATGTTGATTCTGCTGATGACAGC
AAAAAGTCACGAAGACGTAAAGAACGCCACGAAGAAGAGAACGTTGAAGA
ACGCCGAGAACGTAAGAGAAAAACGTCAGTCAGTGAAGACACAAGACGTG
AGAGAAGACGTAGATCTCCGGAAAGTGAAGTTAAGAGGAATCGTTCACCT
GCGGAAGATGACGAGAGAAAGCACAGACGCCGTAGATCACCTTACGAAGA
GCCCCAAAGACATCCCAGGTCGCCTTCCGAGGAGCCACCAAGACGTACCC
GAGAACGTGACGCATACGAAGACAGGGAAGAGAATCTTAACTCACGACGT
CGTAGTCCAGAAGTCACGAAAGACGAATCTGAGCTTTACGGACAAGATTT
GCCGGTACGCGAGTTTGGTTACGACGGTTATGCAGAGAAAAGAACCAAAG
GGGAAGGTAAAAAGACATCTCTTCTTTACACTGACGATATGATTCCACCT
GTCGAAGATGTAGTGCAGACTCTTGAGGACTATGATACTTTATTAGCCAG
CAAAGAAAACTCTGACATGGACATATCCGACGCTGACGTACCGGCTACGA
AGTCCCCAAGCCAGATATCATTACACGCTGATGATAGCCCTAGCCGTGCG
ATTGAGGAAACGAGAGACCGCTCGCGAACCAAATCTAAACCAGATAGTAA
GAAGCAGAAGGATGGAGTTGAGAAAAGCAGTAAGAGATCATCCACAGGTA
AAGCTGGCAAGGAGAAGAAGAAACGTGAGAATTCCGTTGACGTGGACGCT
ACTGAAGAAGTAGAGAAGACGCAACAACGTATCGCCGAACTGGAAGAAAT
GTTGCGACTTGAACGACTGAAGAAGTCCAGTGGTAAGAAGACAACTTCAC
CAAAAAAGAAGAAGCGATCTTCTAAAGGAGAGGAAGAGGAAAAAGCGAGC
AAAGGGAAATCAAAGAAGAAACAAAAGAAAGAGGAATCAAGTTCTGACTC
AGAATCTGAAGATGGTATGTGATTTCATAGTTCGCTACACCTTTCTTCTT
ATTACCCACGTGTTTCAAATTTCCAAGTAATTCAGTGCGTAGTTAGTTCC
TTGCTAACTACTCTTAGATTCATTCATCTTGCCTGTCATGTCATCTTTAC
TACTAAATTCTCGCTCGGTGTAGTGCTAGTTTTTGATCGTGTCGCGATTT
CTTGTAACTGGGTTTACCTTGGTTCATTGAGAACGTAAAAACCTTTAGTT
CAATATTTCCTTTAGCCAAAACTATACTAATAAGTTCTCCAACGCTTTCA
ACGCAATGTAAATTTACATTACAACCGCCTGTATAATCTTATCACTATAA
ACTTTCAGTTTAAATGAAATGATCAAATAAAAATATACTCTTTCCAAACC
ATTGAATTTTAGATTCTAAGAAGAAGAGTAAATCGAAGAAAACACCATCG
AAAGACAAACGCCGAAAAGCTGCTGAATCTTCAGATTCTAGTGATAGTGA
ATCAGACGAAAGTGGTCGCGAGTCACGCAAAAAGAAAGCATCTTCCTCAA
GCAAAAAGGTTGGTACTGGTTGTTTTCTCAGAATATTCACTTTATCAGCC
CCTTTTATATCTGACTTTTATTGGTGTTATTTTGGACATGCATCGGAAAA
AAACCGGTGCAAAAAGGACTACCTCGCAGTTTTTACGCTTAATATTTTAT
TCTGAAATCTGGACACTTTCATCACATAAGATCTTTATTTTGCAGCCATG
TCTGTCATTTAAGTTTGCTCTCAGAAATCTAATTCGTCCTTCGATCTGAA
ATGGAGTTTCAGTTTATCTTATTCTGTCTTCTTCTGTTTTCGTCGTCACA
GGTCGTAAAGAATAAAAAGAAAGATGAAGAAGTTGACGCTAAATCCAGCA
AAAAACGAAAACAAACACAAAGTGACGATGAGGACGAAGCCAAAAGCAGT
AAAAATAAATCCAAAGCTAAAGCAAAGGTATAACAAGATGCTACTCGTTT
TCGTTTATCAAACTGTAATTTTTTGGCTCACTCGGAGAAAAGACTTTTTC
GAGAGACGGTCTGAGTGAACAAAGTCTAGAAAATTTTAAAGAAACTTACA
TCAAACCGCTCAAAATTACCTTCTCGACGAGGTATTACTTCTACAAGCTT
GTTCGAATTATATTGGGACTTAGTGTATTTTAACGTTTTTCAGAATTTAA
AGTTTGGGTGAGAATTGCTATTTTAACACTTCCACTTTCTTACATTGAAT
ATTTTGATTTTTGAGGGGTTCGGTGGCCTCTAGGCTATATTCCAAGCCTG
ATCGAAACAATTTTGAGCTTTGAAATCCTGCGATTGTAAGTCCGTAAGTC
TTAAGTTTCATGTTAAAACTCAGTTCAATTAGCTGAATACGCATTTGTGT
ACCTACCTTTTTCTCACTGTCTTAGAAACCAAGTCAAAAGAGTAAAGCAT
CAAACCGTAAGAAGCGAGACGACAGTTCAGATGACGATGAAGAAGAACGT
CCAAAAAAATCTTCAGCCTCAAAACGAAAACGAAAGCGAAAGTACTCATC
AAGTTCATCATCGAGCAGTTCAAGTGAAGATTCATCCACAGAATCTAGTT
CGTCATCCGGTGAATCCAGCAGTTCCGAATCGGATTCATCTTCGTCCGAT
TCTGATTCATCAAGTTCTTCCAGGAGTCCGACTCCGGAAAAGAAATCACG
GAAATCAGGATCGTCAAATAAGAAAAATCGCAAAAGGAAATCCTAAGAGG
AGATCATGAACCACCTTTAACGATAGAGATTGTGAAGACAATGTTTTTAT
TTTGGTCTATGCCAAGTTGTGGATAATGATTTGGCAATGAAGATGGCTCT
TGGAGAAATGAATTCCTTTGCTATGAAAACATTCAACCTCAAAAAGAGAC
TTTTTAGAGACTTGTTTTTTAAAGATTATCCATGTATATACGAAGAAGAA
AAAAGATTGGATCCAGACTAACAGACTTGATGAAGTCGATAAAATCTAAC
ATGAATATTTTGTTTTTAAATTGACAATGTACAACTTTTATATCTTTTTG
GGAAAGGATCAGGTTTATTACTCTGAATAATCTAATAATG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_006810XLOC_006810Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00012109-exon-sc0000137-1575043694:78612..78635TCONS_00012109-exon-sc0000137-1575043694:78612..78635Clytia hemisphaericaexon
TCONS_00012109-exon-sc0000137-1575043694:76957..77227TCONS_00012109-exon-sc0000137-1575043694:76957..77227Clytia hemisphaericaexon
TCONS_00012109-exon-sc0000137-1575043694:76416..76514TCONS_00012109-exon-sc0000137-1575043694:76416..76514Clytia hemisphaericaexon
TCONS_00012109-exon-sc0000137-1575043694:75886..76068TCONS_00012109-exon-sc0000137-1575043694:75886..76068Clytia hemisphaericaexon
TCONS_00012109-exon-sc0000137-1575043694:73443..73505TCONS_00012109-exon-sc0000137-1575043694:73443..73505Clytia hemisphaericaexon
TCONS_00012109-exon-sc0000137-1575043694:72037..72111TCONS_00012109-exon-sc0000137-1575043694:72037..72111Clytia hemisphaericaexon
TCONS_00012109-exon-sc0000137-1575043694:71627..71668TCONS_00012109-exon-sc0000137-1575043694:71627..71668Clytia hemisphaericaexon
TCONS_00012109-exon-sc0000137-1575043694:71144..71242TCONS_00012109-exon-sc0000137-1575043694:71144..71242Clytia hemisphaericaexon
TCONS_00012109-exon-sc0000137-1575043694:70455..70692TCONS_00012109-exon-sc0000137-1575043694:70455..70692Clytia hemisphaericaexon
TCONS_00012109-exon-sc0000137-1575043694:68572..70255TCONS_00012109-exon-sc0000137-1575043694:68572..70255Clytia hemisphaericaexon
TCONS_00012109-exon-sc0000137-1575043694:68028..68173TCONS_00012109-exon-sc0000137-1575043694:68028..68173Clytia hemisphaericaexon
TCONS_00012109-exon-sc0000137-1575043694:67609..67734TCONS_00012109-exon-sc0000137-1575043694:67609..67734Clytia hemisphaericaexon
TCONS_00012109-exon-sc0000137-1575043694:66496..67160TCONS_00012109-exon-sc0000137-1575043694:66496..67160Clytia hemisphaericaexon
TCONS_00012109-exon-sc0000137-1510915933:78612..78635TCONS_00012109-exon-sc0000137-1510915933:78612..78635Clytia hemisphaericaexon
TCONS_00012109-exon-sc0000137-1510915933:76957..77227TCONS_00012109-exon-sc0000137-1510915933:76957..77227Clytia hemisphaericaexon
TCONS_00012109-exon-sc0000137-1510915933:76416..76514TCONS_00012109-exon-sc0000137-1510915933:76416..76514Clytia hemisphaericaexon
TCONS_00012109-exon-sc0000137-1510915933:75886..76068TCONS_00012109-exon-sc0000137-1510915933:75886..76068Clytia hemisphaericaexon
TCONS_00012109-exon-sc0000137-1510915933:73443..73505TCONS_00012109-exon-sc0000137-1510915933:73443..73505Clytia hemisphaericaexon
TCONS_00012109-exon-sc0000137-1510915933:72037..72111TCONS_00012109-exon-sc0000137-1510915933:72037..72111Clytia hemisphaericaexon
TCONS_00012109-exon-sc0000137-1510915933:71627..71668TCONS_00012109-exon-sc0000137-1510915933:71627..71668Clytia hemisphaericaexon
TCONS_00012109-exon-sc0000137-1510915933:71144..71242TCONS_00012109-exon-sc0000137-1510915933:71144..71242Clytia hemisphaericaexon
TCONS_00012109-exon-sc0000137-1510915933:70455..70692TCONS_00012109-exon-sc0000137-1510915933:70455..70692Clytia hemisphaericaexon
TCONS_00012109-exon-sc0000137-1510915933:68572..70255TCONS_00012109-exon-sc0000137-1510915933:68572..70255Clytia hemisphaericaexon
TCONS_00012109-exon-sc0000137-1510915933:68028..68173TCONS_00012109-exon-sc0000137-1510915933:68028..68173Clytia hemisphaericaexon
TCONS_00012109-exon-sc0000137-1510915933:67609..67734TCONS_00012109-exon-sc0000137-1510915933:67609..67734Clytia hemisphaericaexon
TCONS_00012109-exon-sc0000137-1510915933:66496..67160TCONS_00012109-exon-sc0000137-1510915933:66496..67160Clytia hemisphaericaexon
TCONS_00012109-exon-sc0000137-1491911889:78612..78635TCONS_00012109-exon-sc0000137-1491911889:78612..78635Clytia hemisphaericaexon
TCONS_00012109-exon-sc0000137-1491911889:76957..77227TCONS_00012109-exon-sc0000137-1491911889:76957..77227Clytia hemisphaericaexon
TCONS_00012109-exon-sc0000137-1491911889:76416..76514TCONS_00012109-exon-sc0000137-1491911889:76416..76514Clytia hemisphaericaexon
TCONS_00012109-exon-sc0000137-1491911889:75886..76068TCONS_00012109-exon-sc0000137-1491911889:75886..76068Clytia hemisphaericaexon
TCONS_00012109-exon-sc0000137-1491911889:73443..73505TCONS_00012109-exon-sc0000137-1491911889:73443..73505Clytia hemisphaericaexon
TCONS_00012109-exon-sc0000137-1491911889:72037..72111TCONS_00012109-exon-sc0000137-1491911889:72037..72111Clytia hemisphaericaexon
TCONS_00012109-exon-sc0000137-1491911889:71627..71668TCONS_00012109-exon-sc0000137-1491911889:71627..71668Clytia hemisphaericaexon
TCONS_00012109-exon-sc0000137-1491911889:71144..71242TCONS_00012109-exon-sc0000137-1491911889:71144..71242Clytia hemisphaericaexon
TCONS_00012109-exon-sc0000137-1491911889:70455..70692TCONS_00012109-exon-sc0000137-1491911889:70455..70692Clytia hemisphaericaexon
TCONS_00012109-exon-sc0000137-1491911889:68572..70255TCONS_00012109-exon-sc0000137-1491911889:68572..70255Clytia hemisphaericaexon
TCONS_00012109-exon-sc0000137-1491911889:68028..68173TCONS_00012109-exon-sc0000137-1491911889:68028..68173Clytia hemisphaericaexon
TCONS_00012109-exon-sc0000137-1491911889:67609..67734TCONS_00012109-exon-sc0000137-1491911889:67609..67734Clytia hemisphaericaexon
TCONS_00012109-exon-sc0000137-1491911889:66496..67160TCONS_00012109-exon-sc0000137-1491911889:66496..67160Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000137supercontigsc0000137:66496..78635 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.239057	3.91314	1.96811	2.60625	23.065	3.78704	31.9833	19.2588	8.71837	7.09763	15.4018	19.4428	14.0762	7.94341	3.74887	2.49781	8.58474	9.68627	2.35831	0.671779	3.44408	0.0039251	7.60093	1.86266	20.6079	17.3038	1.30875	2.27926	0.729106	0.230791
Blast
[Close]
BLAST of TCONS_00012109 vs. Swiss-Prot (Human)
Match: SRRM2 (Serine/arginine repetitive matrix protein 2 OS=Homo sapiens GN=SRRM2 PE=1 SV=2)

HSP 1 Score: 119.783 bits (299), Expect = 6.361e-27
Identity = 71/156 (45.51%), Postives = 104/156 (66.67%), Query Frame = 3 
Query:   45 MYNGIGVQTTRGTGTNGYVTRNLSHINHSRKDNKPTYDYNDTSLLGGFESSLVKKPNKDILDHNRKRNIEVKCXXXXXXXXXXXXXXXXXXXTKVSEYRKELMDK----AGLSKQEEVQPSMSGSHEVAEANEAKNSKMRDAFGIKNDFTEGSSFN 500
            MYNGIG+ T RG+GTNGYV RNLS +   R+  +P  DY     L   E++LVK+PN DILDH RKR +E++CLEL+E +EE+G    +  E KV+ +R  L++K     G  +    +P+++ +H++AE NE KN ++R AFGI + + +GSSF+
Sbjct:    1 MYNGIGLPTPRGSGTNGYVQRNLSLV-RGRRGERP--DYKGEEELRRLEAALVKRPNPDILDHERKRRVELRCLELEEMMEEQGYEEQQIQE-KVATFRLMLLEKDVNPGGKEETPGQRPAVTETHQLAELNEKKNERLRAAFGISDSYVDGSSFD 152
The following BLAST results are available for this feature:
BLAST of TCONS_00012109 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
SRRM26.361e-2745.51Serine/arginine repetitive matrix protein 2 OS=Hom... [more]
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