TCONS_00012114 (transcript) - C. hemisphaerica

Overview
NameTCONS_00012114
Unique NameTCONS_00012114
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1300

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00012114 ID=TCONS_00012114|Name=TCONS_00012114|organism=Clytia hemisphaerica|type=transcript|length=1300bp
GACAATTTTTTTAGCATAATATTCATTATTAAGTAAACTAGATAATTAGA
ATACCAAAAAGAATGGAGCAAAATCAAATTCCAGATGTTTCTAAAGACGC
TGTTCTTGTGCAGAGTGTCAAAATGCCCGATGATGCACCACAAGTGAAAG
GCTATGATTTCAACGAAGGATTGAATTACGAAAAGTTAATGAAATCGTAC
TATTCCACTGGTTTTCAAGCGTTACATTTGGGACAGGCTTTTGAGGAGAT
CAATAATATGCTAAAATGTAGAGATCTTCCTCTTGAGAATGTTAGTCAGC
ATACAGATGAAAAGTTGCGTCCCAAGACAAATTGCACCATTTTCTTGGGT
TATACATCGAATATGGCCTCAGCAGGGATCAGAGATGTGATCCGTTTTTT
AGTGCAGCACAAGCTGGTTGATGTAGTTGTCACTACAGCAGGAGGGATAG
AGGAAGATTTCATTAAGTGTATGGCACCTACATATCTTGGTGATTTTAAA
TTGAAAGGTGCTACTTTACGTAAACAAGGCTTGAATCGTACTGGTAATCT
GATTGTTCCCAATGATAATTACTGCACTTTTGAAAATTGGTTTCAACCTA
TATTGGATCAAATGCTAAAAGAGCAAAATGAGAATGGTACTAACTGGACA
CCGTCAAAAATGATTGCACGAATGGGTAAAGAAATTGATAATGAAGAGTC
CATTTACTATTGGGCATACAAGAACAGTATTCCAGTTTTCAGCCCAGCTA
TAACTGACGGTTCAATTGGTGATAATATTTATTTCCATAGTTTCCGTAAA
CCTGGATTAAGAATTGACATTGCAGAGGATATTACCTACATTAATAATTT
GTCAGTTAAATCTAAAAATACTGGGCAGGTCATTATTGGTGGCGGTTTGA
TCAAACATCATATCTGTAATGCCAATTTGATGCGTAATGGTGCAGATTAC
AGTGTTTATGTTAATACAGCGGGAGAATTTGATGGCTCAGATGCAGGGGC
CGCACCAGATGAGGCTGTTTCttggggaaaaattaaaatgactGCAAAAC
CAGTCAAAGTTGTCGCAGACGCTACTCTTGTATTTCCATTGATTGTAGCG
GAGACGGAGACATTTGCTAAATATCATTATGCAAAGAAAGAACAACAGAT
GTAAAGCTGGTCGGCTTTTCGATTTTGTTCTTTCTGTAATATAGGCAGAT
CCTTGATATAGCGAATGCATAATAGGTATATGATTTCAAGGgcatttaca
aattttttttttattttgatatcatTTAGGCTATGCCATATCTTTGAAAC
Run BLAST on NCBI

protein sequence of TCONS_00012114-protein

>TCONS_00012114-protein ID=TCONS_00012114-protein|Name=TCONS_00012114-protein|organism=Clytia hemisphaerica|type=polypeptide|length=363bp
MEQNQIPDVSKDAVLVQSVKMPDDAPQVKGYDFNEGLNYEKLMKSYYSTG
FQALHLGQAFEEINNMLKCRDLPLENVSQHTDEKLRPKTNCTIFLGYTSN
MASAGIRDVIRFLVQHKLVDVVVTTAGGIEEDFIKCMAPTYLGDFKLKGA
TLRKQGLNRTGNLIVPNDNYCTFENWFQPILDQMLKEQNENGTNWTPSKM
IARMGKEIDNEESIYYWAYKNSIPVFSPAITDGSIGDNIYFHSFRKPGLR
IDIAEDITYINNLSVKSKNTGQVIIGGGLIKHHICNANLMRNGADYSVYV
NTAGEFDGSDAGAAPDEAVSWGKIKMTAKPVKVVADATLVFPLIVAETET
FAKYHYAKKEQQM
Run BLAST on NCBI

transcript from alignment at sc0000137:101631..103582-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00012114 ID=TCONS_00012114|Name=TCONS_00012114|organism=Clytia hemisphaerica|type=transcript|length=1952bp|location=Sequence derived from alignment at sc0000137:101631..103582- (Clytia hemisphaerica)
GACAATTTTTTTAGCATAATATTCATTATTAAGTAAACTAGATAATTAGA
ATACCAAAAAGAATGGAGCAAAATCAAATTCCAGATGTTTCTAAAGACGC
TGTTCTTGTGCAGAGTGTCAAAATGCCCGATGATGCACCACAAGTGAAAG
GCTATGATTTCAACGAAGGATTGAATTACGAAAAGTTAATGAAATCGTAC
TATTCCACTGGTTTTCAAGCGTTACATTTGGGACAGGCTTTTGAGGAGAT
CAATAATATGCTAAAATGTAGAGATCTTCCTCTTGAGAATGTTAGTCAGC
ATACAGATGAAAAGTTGCGTCCCAAGACAAATTGCACCATTTTCTTGGGT
TATACATCGAATATGGCCTCAGCAGGGATCAGAGATGTGATCCGTTTTTT
AGTGCAGCACAAGCTGGTTGATGTAGTTGTCACTACAGCAGGAGGGATAG
AGGAAGATTTCATTAAGTGTATGGCACCTACATATCTTGGTGATTTTAAA
TTGAAAGGTGCTACTTTACGTAAACAAGGCTTGAATCGTACTGGTAATCT
GATTGTTCCCAATGATAATTACTGCACTTTTGAAAATTGGTTTCAACCTA
TATTGGATCAAATGCTAAAAGAGCAAAATGAGAATGGTACTAACTGGACA
CCGTCAAAAATGATTGCACGAATGGGTAAAGAAATTGATAATGAAGAGTC
CATTTACTATTGGGCATACAAGAACAGTATTCCAGTTTTCAGCCCAGCTA
TAACTGACGGTTCAATTGGTGATAATATTTATTTCCATAGTTTCCGTAAA
CCTGGATTAAGAATTGACATTGCAGAGGATATTACCTACATTAATAATTT
GTCAGTTAAATCTAAAAATACTGGGCAGGTCATTATTGGTGGCGGTTTGA
TCAAACATCATATCTGTAATGCCAATTTGATGCGTAATGGTGCAGATTAC
AGTGTTTATGTTAATACAGCGGGAGAATTTGATGGCTCAGATGCAGGGGC
CGCACCAGATGAGGCTGTTTCTTGGGGAAAAATTAAAATGACTGCAAAAC
CAGTCAAAGTTGTCGCAGACGCTACTCTTGTATTTCCATTGATTGTAGCG
GAGACATTTGCTAAATATCACTATGCAAAGAAAGAACAACAGATGTAAAG
CTGGTCGGCTTTTCGATTTTGTTCTTTCTGTNCAAGGCTTGAATCGTACT
GGTAATCTGATTGTTCCCAATGATAATTACTGCACTTTTGAAAATTGGTT
TCAACCTATATTGGATCAAATGCTAAAAGAGCAAAATGAGAATGGTACTA
ACTGGACACCGTCAAAAATGATTGCACGAATGGGTAAAGAAATTGATAAT
GAAGAGTCCATTTACTATTGGGCATACAAGAACAGTATTCCAGTTTTCAG
CCCAGCTATAACTGACGGTTCAATTGGTGATAATATTTATTTCCATAGTT
TCCGTAAACCTGGATTAAGAATTGACATTGCAGAGGACATTACATACATT
AATAATTTGTCTGTCAAATCTAAAAATACTGGGCAGGTCATCATTGGTGG
AGGTTTGATCAAACATCATATCTGTAATGCCAATTTGATGCGTAATGGTG
CAGATTACAGTGTTTATGTTAATACAGCGGGAGAATTTGATGGCTCAGAT
GCAGGTGCTGCACCAGACGAGGCTGTCTCTTGGGGAAAAATTAAAATGAC
TGCAAAGCCAGTCAAAGTTGTCGCAGACGCTACTCTTGTATTTCCATTGA
TTGTAGCGGAGACATTTGCTAAATATCATTATGCAAAGAAAGAACAACAG
ATGTAAAGCTGGTCGGCTTTTCGATTTTGTTCTTTCTGTAATATAGGCAG
ATCCTTGATATAGCGAATGCATAATAGGTATATGATTTCAAGGGCATTTA
CAAATTTTTTTTTTATTTTGATATCATTTAGGCTATGCCATATCTTTGAA
AC

Coding sequence (CDS) from alignment at sc0000137:101631..103582-

>TCONS_00012114 ID=TCONS_00012114|Name=TCONS_00012114|organism=Clytia hemisphaerica|type=CDS|length=2184bp|location=Sequence derived from alignment at sc0000137:101631..103582- (Clytia hemisphaerica)
GGAGACATTTGCTAAATATCATTATGCAAAGAAAGAACAACAGATGTAAA
TGGAGCAAAATCAAATTCCAGATGTTTCTAAAGACGCTGTTCTTGTGCAG
AGTGTCAAAATGCCCGATGATGCACCACAAGTGAAAGGCTATGATTTCAA
CGAAGGATTGAATTACGAAAAGTTAATGAAATCGTACTATTCCACTGGTT
TTCAAGCGTTACATTTGGGACAGGCTTTTGAGGAGATCAATAATATGCTA
AAATGTAGAGATCTTCCTCTTGAGAATGTTAGTCAGCATACAGATGAAAA
GTTGCGTCCCAAGACAAATTGCACCATTTTCTTGGGTTATACATCGAATA
TGGCCTCAGCAGGGATCAGAGATGTGATCCGTTTTTTAGTGCAGCACAAG
CTGGTTGATGTAGTTGTCACTACAGCAGGAGGGATAGAGGAAGATTTCAT
TAAGTGTATGGCACCTACATATCTTGGTGATTTTAAATTGAAAGGTGCTA
CTTTACGTAAACAAGGCTTGAATCGTACTGGTAATCTGATTGTTCCCAAT
GATAATTACTGCACTTTTGAAAATTGGTTTCAACCTATATTGGATCAAAT
GCTAAAAGAGCAAAATGAGAATGGTACTAACTGGACACCGTCAAAAATGA
TTGCACGAATGGGTAAAGAAATTGATAATGAAGAGTCCATTTACTATTGG
GCATACAAGAACAGTATTCCAGTTTTCAGCCCAGCTATAACTGACGGTTC
AATTGGTGATAATATTTATTTCCATAGTTTCCGTAAACCTGGATTAAGAA
TTGACATTGCAGAGGATATTACCTACATTAATAATTTGTCAGTTAAATCT
AAAAATACTGGGCAGGTCATTATTGGTGGCGGTTTGATCAAACATCATAT
CTGTAATGCCAATTTGATGCGTAATGGTGCAGATTACAGTGTTTATGTTA
ATACAGCGGGAGAATTTGATGGCTCAGATGCAGGGGCCGCACCAGATGAG
GCTGTTTCTTGGGGAAAAATTAAAATGACTGCAAAACCAGTCAAAGTTGT
CGCAGACGCTACTCTTGTATTTCCATTGATTGTAGCGGAGACGGAGACAT
TTGCTAAATATCATTATGCAAAGAAAGAACAACAGATGTAAATGGAGCAA
AATCAAATTCCAGATGTTTCTAAAGACGCTGTTCTTGTGCAGAGTGTCAA
AATGCCCGATGATGCACCACAAGTGAAAGGCTATGATTTCAACGAAGGAT
TGAATTACGAAAAGTTAATGAAATCGTACTATTCCACTGGTTTTCAAGCG
TTACATTTGGGACAGGCTTTTGAGGAGATCAATAATATGCTAAAATGTAG
AGATCTTCCTCTTGAGAATGTTAGTCAGCATACAGATGAAAAGTTGCGTC
CCAAGACAAATTGCACCATTTTCTTGGGTTATACATCGAATATGGCCTCA
GCAGGGATCAGAGATGTGATCCGTTTTTTAGTGCAGCACAAGCTGGTTGA
TGTAGTTGTCACTACAGCAGGAGGGATAGAGGAAGATTTCATTAAGTGTA
TGGCACCTACATATCTTGGTGATTTTAAATTGAAAGGTGCTACTTTACGT
AAACAAGGCTTGAATCGTACTGGTAATCTGATTGTTCCCAATGATAATTA
CTGCACTTTTGAAAATTGGTTTCAACCTATATTGGATCAAATGCTAAAAG
AGCAAAATGAGAATGGTACTAACTGGACACCGTCAAAAATGATTGCACGA
ATGGGTAAAGAAATTGATAATGAAGAGTCCATTTACTATTGGGCATACAA
GAACAGTATTCCAGTTTTCAGCCCAGCTATAACTGACGGTTCAATTGGTG
ATAATATTTATTTCCATAGTTTCCGTAAACCTGGATTAAGAATTGACATT
GCAGAGGATATTACCTACATTAATAATTTGTCAGTTAAATCTAAAAATAC
TGGGCAGGTCATTATTGGTGGCGGTTTGATCAAACATCATATCTGTAATG
CCAATTTGATGCGTAATGGTGCAGATTACAGTGTTTATGTTAATACAGCG
GGAGAATTTGATGGCTCAGATGCAGGGGCCGCACCAGATGAGGCTGTTTC
TTGGGGAAAAATTAAAATGACTGCAAAACCAGTCAAAGTTGTCGCAGACG
CTACTCTTGTATTTCCATTGATTGTAGCGGAGAC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_006812XLOC_006812Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00012114-proteinTCONS_00012114-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00012114-exon-sc0000137-1575043694:102478..103582TCONS_00012114-exon-sc0000137-1575043694:102478..103582Clytia hemisphaericaexon
TCONS_00012114-exon-sc0000137-1575043694:101631..101825TCONS_00012114-exon-sc0000137-1575043694:101631..101825Clytia hemisphaericaexon
TCONS_00012114-exon-sc0000137-1510915933:102478..103582TCONS_00012114-exon-sc0000137-1510915933:102478..103582Clytia hemisphaericaexon
TCONS_00012114-exon-sc0000137-1510915933:101631..101825TCONS_00012114-exon-sc0000137-1510915933:101631..101825Clytia hemisphaericaexon
TCONS_00012114-exon-sc0000137-1491911889:102478..103582TCONS_00012114-exon-sc0000137-1491911889:102478..103582Clytia hemisphaericaexon
TCONS_00012114-exon-sc0000137-1491911889:101631..101825TCONS_00012114-exon-sc0000137-1491911889:101631..101825Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000137supercontigsc0000137:101631..103582 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
35.046	29.7734	16.9778	16.4524	8.19506	2.73559	17.094	20.1174	13.0619	9.68773	6.82141	7.6196	3.53246	8.95917	5.39408	5.36243	13.6611	5.84763	3.40979	2.15495	6.10728	7.70648	25.5729	24.7286	10.2453	11.4809	10.4399	5.06373	13.848	15.9878
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR002773Deoxyhypusine_synthase
IPR029035DHS-like_NAD/FAD-binding_dom
Vocabulary: Biological Process
TermDefinition
GO:0008612peptidyl-lysine modification to peptidyl-hypusine
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008612 peptidyl-lysine modification to peptidyl-hypusine
Blast
[Close]
BLAST of TCONS_00012114 vs. Swiss-Prot (Human)
Match: DHYS (Deoxyhypusine synthase OS=Homo sapiens GN=DHPS PE=1 SV=1)

HSP 1 Score: 476.093 bits (1224), Expect = 3.301e-166
Identity = 215/349 (61.60%), Postives = 281/349 (80.52%), Query Frame = 3 
Query:   69 QNQIPDVSKDAVLVQSVKMPDDAPQVKGYDFNEGLNYEKLMKSYYSTGFQALHLGQAFEEINNMLKCRDLPL-ENVSQHTD--EKLRPKTNCTIFLGYTSNMASAGIRDVIRFLVQHKLVDVVVTTAGGIEEDFIKCMAPTYLGDFKLKGATLRKQGLNRTGNLIVPNDNYCTFENWFQPILDQMLKEQNENGTNWTPSKMIARMGKEIDNEESIYYWAYKNSIPVFSPAITDGSIGDNIYFHSFRKPGLRIDIAEDITYINNLSVKSKNTGQVIIGGGLIKHHICNANLMRNGADYSVYVNTAGEFDGSDAGAAPDEAVSWGKIKMTAKPVKVVADATLVFPLIVAET 1106
            + + P  +  AVL  S  +P ++ QV+GYDFN G+NY  L++++ +TGFQA + G+A +++N M++ +  PL ++  QH D  +  RP T+CTIFLGYTSN+ S+GIR+ IR+LVQH +VDV+VTTAGG+EED IKC+APTYLG+F L+G  LR+ G+NR GNL+VPN+NYC FE+W  PILDQM+ EQN  G  WTPSKMIAR+GKEI+N ES+YYWA KN IPVFSPA+TDGS+GD I+FHS++ PGL +DI ED+  IN  ++ +K TG +I+GGG++KHHI NANLMRNGADY+VY+NTA EFDGSD+GA PDEAVSWGKI++ A+PVKV ADA+LVFPL+VAET
Sbjct:    6 EREAPAGALAAVLKHSSTLPPESTQVRGYDFNRGVNYRALLEAFGTTGFQATNFGRAVQQVNAMIEKKLEPLSQDEDQHADLTQSRRPLTSCTIFLGYTSNLISSGIRETIRYLVQHNMVDVLVTTAGGVEEDLIKCLAPTYLGEFSLRGKELRENGINRIGNLLVPNENYCKFEDWLMPILDQMVMEQNTEGVKWTPSKMIARLGKEINNPESVYYWAQKNHIPVFSPALTDGSLGDMIFFHSYKNPGLVLDIVEDLRLINTQAIFAKCTGMIILGGGVVKHHIANANLMRNGADYAVYINTAQEFDGSDSGARPDEAVSWGKIRVDAQPVKVYADASLVFPLLVAET 354
The following BLAST results are available for this feature:
BLAST of TCONS_00012114 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
DHYS3.301e-16661.60Deoxyhypusine synthase OS=Homo sapiens GN=DHPS PE=... [more]
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