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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00012117 ID=TCONS_00012117|Name=TCONS_00012117|organism=Clytia hemisphaerica|type=transcript|length=867bp
TTTGAATATATGTAATAAGTTACACGAGTAAGATTATTTTTGAGCGCATT
TCTTGTCACAACACAACTATGGTGACGAGTATACATTAGATTATTTTTAC
CGATGCTTGTTCTATTAATACTATTTGGATTTTCTTGCACACCTCAATCA
GCTAGACCAGCTATTGTTGTTTCGACGTCTGACTTTGGGTCGTTAAAGTC
TATTGttcatcaaaatctttgttatAACCTTATTTGGAGAAAGTTATATC
ATGACACGTCGCTTTCTAAATATCATGCAAATGAGGTCTATTGTTTTTCC
AATGCCAGTGATTTTTCGACTATTTAAAgcgaatttttgatattttaaaa
tcaCTCATCACCAGAACTCACTAGCATCAGCACTTACTCAAAGCATATTT
GgtTACAAGCAGAAATGATGAATATGAAATTTGCATTCGCCGTCTTCTTG
ATGGTTGCATTTATCAATACAGAAGTTGAAGGCAAATCAAAAGCAGATAA
AAAAGCTGCAGGAGAGGAGATCGAACGCCTCGTCGCGATTGGCCAACGCA
ATGATGTCGAGATGGGAAGAATTTCCAAACAAAAGGATTCTTTGGACAGC
CAATTGCAACGAATGAATGCGAAGAGAGATTCTATCAAAGCTCAAATAAC
AAAAATTCTTGATGACAATCTTCCAATCAAACgCATAAGCTCCCGTCGAG
ATTATTCATTTAGTGAAGATGAGAAGGAAATGACTCTAATATGTTGTCCA
TGGGTCATCTGGTGTTGCATTGTATAATTGACTTCGTGATAGAAGAGGGA
AAACCTGTCTTTTATTAAGACACTTTAGTTTATCTTGTAGAAAAAAAGTA
TACTTTTGGGACTTGGA Run BLAST on NCBI protein sequence of TCONS_00012117-protein >TCONS_00012117-protein ID=TCONS_00012117-protein|Name=TCONS_00012117-protein|organism=Clytia hemisphaerica|type=polypeptide|length=120bp
MMNMKFAFAVFLMVAFINTEVEGKSKADKKAAGEEIERLVAIGQRNDVEM
GRISKQKDSLDSQLQRMNAKRDSIKAQITKILDDNLPIKRISSRRDYSFS
EDEKEMTLICCPWVIWCCIV Run BLAST on NCBI transcript from alignment at sc0000137:159601..164660- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00012117 ID=TCONS_00012117|Name=TCONS_00012117|organism=Clytia hemisphaerica|type=transcript|length=5060bp|location=Sequence derived from alignment at sc0000137:159601..164660- (Clytia hemisphaerica)
TTTGAATATATGTAATAAGTTACACGAGTAAGATTATTTTTGAGCGCATT
TCTTGTCACAACACAACTATGGTGACGAGTATACATTAGATTATTTTTAC
CGATGCTTGTTCTATTAATACTATTTGGATTTTCTTGCACACCTCAATCA
GCTAGACCAGCTATTGTTGTTTCGACGTCTGACTTTGGGTCGTTAAAGTC
TATTGTTCATCAAAATCTTTGTTATAACCTTATTTGGAGAAAGTTATATC
ATGACACGTCGCTTTCTAAATATCATGCAAATGAGGTCTATTGTTTTTCC
AATGCCAGTGATTTTTCGACTATTTAAAGCGAATTTTTGATATTTTAAAA
TCACTCATCACCAGAACTCACTAGCATCAGCACTTACTCAAAGCATATTT
GGTATGTAATTTAATTTTTCTTTTTTTCAAACACTTTTCTTTGTTTGGGG
TCTTAATCAGAGATTTATAAAGCCCGAAGGGCTAGACTTTGTGTGCTTTA
AGCTCTTTGACGCAAAAAAAAAGAATATTGCAAAAAATTATTGTTGCTAT
TGTTTTTGAAAATCCAGGAGGCTTCTGATTATTCAAGGGCTAAAATTCTA
TTGTAATGTCACATAACGTAAGTAGGATTTCCTATCAAGATATGGCACAT
CTGACCTGTCGGGGGCATAATCTTTGGGAGGTGTAAGAAGTGAGTTAAGC
TTTAAGTACAATTAGCTTTACCAGAGCTGAAAAGTGTATCATAAATAGTT
GACTTTATAGTTGAAAAAAATTACTAAGTTTTATTTTGATTTTTAATTTT
AATACTAAAAGTTCTGCACCACAATTCGTGACTTAAGTCACTGTTCGAAT
ATTGTTAAAATTGTTGAAAATTTGGGACTGACTTTAATTTTCTTTCAGGT
TACAAGCAGAAATGATGAATATGAAATTTGCATTCGCCGTCTTCTTGATG
GTTGCATTTATCAATACAGAAGTTGAAGGTGAGAGATTTTGTAAATTTTT
ATAATTATTAGAGTCTATTCGCTTTGTTAAATGTGTAATAACTAATAATG
TAATTAACTTGAAGGAACCCTTAAATTCAAAAGTTTTCGAATACCATTTT
TATTAAAGTTTATAATAGTACTCGGAAACATCTTTTGAACCATAGCAAGG
TACCAAAATTGCGAATCATATTGGTTGAGAAATAATACATAATAAAGGAA
TTAATGCCCACTTAAAACAAAAGAATCTTTTCAAGGGTTTATCTACCAAG
AATTTCGACCTGCTTTCAGAATATTAAGCATAAATTTTTCGGTAAAAAAA
AAATAACAAACTGATAGAAAAAAATTCTAACAATGCCTCTTGGTTTAAAT
TCTTCACATATAATTAAATCAACCACTCTTTTTAATTTTTAATAATTACT
TTAATGATTTATATTAAGGCAAATCAAAAGCAGATAAAAAAGCTGCAGGA
GAGGAGATCGAACGCCTCGTCGCGATTGGCCAACGCAATGATGTCGAGAT
GGGAAGAATTTCCAAACAAAAGGATTCTTTGGACAGCCAATTGCAACGAA
TGAATGCGAAGAGAGATTCTATCAAAGCTCAAATAACAAAAATTCTTGAT
GACAATCTTCCAATCAAACGTAGGTCACCCCTTTAATTTGATAGAGGATA
GAGCGATTCACGAGAAGTAATCTCTTACGTGTTAATTGACTGAACTCAAT
TTCGCACATTAACAAGATTTAATTCGAAGAAAGCACTTTTGTTGAATTTT
GCCAGTCAAAAATACCAGTAAAATAATTCAGCCGTCTCTAATAAGAGTTC
GCCAAAATTGTGAAATTTTTCTCGATGTAAAAGTTTCTGACATTTCTTTC
TGTGGTTCTTTCTTTGATTAAGAGTTTGGAAACTATTCTAGTTGCGAGTT
AGGGAGTTGCTAGTTTCGAGTTGGGAGTTAAAAGATTACCGGCTACCGAA
AAAGAATAACATACATCAAAAGTACGATTTTGAAAGTAAATGTAATATGA
GGGTAATATATAACACATATAATACGTATAATACATATACCACCTGTAAT
ATGCTTATTTGCCTTAAACACGTGCGCTGAGAGCATGGAAAGCTATTTTC
TACTGTCAATGCATATCCATTAGAGACTTTCCGCAGTCACAACGAGAACG
GCAACGACAACGGCAAAACTTGTGAAATAACATATAGGTGTGAAAAATAG
AGAAGTTGCCTGTTGTGGCTCATTTTTGATTCCGCCTATCATTTTTTAAA
AATAACGAAAAACGAAAAATCCTGGAGAAAATCTCGAAGCTTTTCTTTTT
CAAAGCAAACTAAAAATACTGTAATGATCAGAATTATTTTGTAAAGTTAT
TATAGTAACGAGATTAACAAACTGAACAAATTTAAAATCAGGACTTCAAA
AATTCAATACGGAAACTTACACATCTAGCACAAGAAAAAAAGCTAAAAAA
TGATAAAAAGTTTAAAGAGGCCCCCCCCAGCGGACCCTCAATTCACGCAA
TCACGCAATTTTTTTTCGAAATTCACGCATTCACGCAAATTTTCCTCGAG
TTTCACGCAATAACCCGATTTTTCAGAAATCGGAAAATTCTTTGGGAAAA
ATCGGGGAAACATTGGAAAATCGGGAAAACTGCACATAATCGGGGGAAAA
AGGGAAAATTCACGTATTCACGCACAATATAGCCCAGACTCACGCATTCA
CGCAATCAAAAAGTACATTTTCACGTTCACGCAAGTTTTTTTAATTCACG
CATTCACGCATTTTTTTTTCAATTTTCACGCATTCACGCAATCAAAAAGT
ACATTTTCACGTTCACGCAAGTTTTTTTAATTCACGCATTCACGCATTTT
TTTTTCAATTTTCACGCATTCACGCAACCGAAAATGCCCATTCACGCAAT
CACGCAAACCGCTGAGGGGGCCCTTTAAAGATTCTGAAATATGATTTTCA
AAATTGTCTTACTTTCTCACGTTGTCTGACAACGCCAAAATGAGTGATTT
GCCGTCGGGCACGAGAAGAGAAAACGACTAATTGGGGCTTACTCAGAGTT
TTGACAAGTTTTGACAGCTCAAAGGTGTGAGTTTGATGTTTTCACGTTCT
CCTTGTCGTACTCGTTGTGATTGTGGAAAGTGCTTATTTATATTTCCTGC
ACCACATTGAGTATAAATATAATTCTTGATTAAAGTGACTTTAGAACCAT
TGTATTTTATAATGTGATCAAAATTTTTATTAAAAAGTGTCAATTCCAAT
GATAAAATGACAAAAGAAAGTGTCATTATTTTTCTAGCTCTACGAGCTCT
ATCTCTACGAATTTTACGAGGCTAAGATGACTGTCAACTTATATCCTTTT
ATACAATAAGCATCACTTGCAGTATGATCACTATTTTTTGGGGAATTTGT
TTGACAATCATTGTATTTAAAGATTTTGTCAATATTTTTACAAGAACGTG
TCATGTTGTCAACATTATGACAATGACATAACAGTACTAAAGTCTGTCCA
AATATAATTGGCAGTGGAAACAAGAATGCCTGTAACTTTTGATAGTCAAA
TTTAATTATGGAAATTTTTTGCGGTTAAATTTGCGATTGCAAAAATTGAG
CTTTTTTTCTACTTATGCTATAACGTTCATTTTTACACCAGTGGTAAGTT
TCTTAAATTTCAAGGCAAACAGAAAAGTCCTTCGGAAGATATGGGACCCG
AAATACCCCTTGGTAGCACTTTTCTGTGAAATATCAAATCTCCAACTTAT
TGCTAAAAACGGGGGTAGTGATATTATTGATAAAACAGTTTTTCGATCAT
AACACATTTTACGATTTCTTTAATGACCTCATAGCCAAACTGTGTTTAGT
GTTTTGGGAATTAGCAAAGTTCTTTAATGACTTAAAATAACAAAGGCAAT
ATAAGTGCGTGCCTATCTTTTCAAAAGAAACAATTATACTGTGATTTCAC
TTCGTTTCGAAATATGATACCAATAATACCAATGCACCAACACTTAACAT
TTTAACTTAAACTTTTAATTGCACTGTTCCCCCCGTTTTTAGTAATAAGT
TGGTATTTCACAGAAAAGTGCTACCAAGGGGTATTTCGGGTCCCATATCT
TCCGATGGATTTTTCAGTTTGCCTTGAAACTTAACAAGCTTCTTAACCTA
AGGTTGAACTACCACTGGTGTAAAAATGAAAGTTATAGCATAGGTAGAGA
AAAAGCTCAATTTTTACAATCGCAAATTTAACCGCTAAAAATCGCAAATT
TTTCAACCAAAAATACATTCAAACATAGCGCTTTTGATTCTTTAAAACAA
GAAAAAAAAATTCTATAATTATATTTGACTATCAAAAGTTACAGGCATTC
TTGTTTCCACTGCCAATTATATTTGGACAGACTTTAAGTATTTTGGCTTT
GCTAGCCAGCACCTTACCATTTTCATGATCTTAAAGTCAATAATATGTTT
GGTACTGGCTAAATTGTACTTTTGGGCTACATTAGTTTAAATTAGGAANA
TTTGGTACTAGCTAATTTGTACTTTTGGGCTACATTAGTTAAAATTAGGA
AATTTTCGGTTGCCGTGATGTTTTACGAACTCCCCAACTCGAAACTAGCA
ACTCCCCAACTCCACAACTCACCAACTAGAACATTACCTAGACTCTTTGA
TTAATTTCCTCAGACGCAGTTTAAACATAGTTTTTAAATCTAACATGTCT
CACTTTGTTCTTTCTTTGTTAGCTGTAAAATTCAAGATTTACATCTTGTT
TATCGAATAAGGGAAATTTCCTACTTTTCACTAGGCCAGCGTGATTGATA
ATAATCCAATACTTCTTGACAATCGAATTAAATAGCACAAACTGTTATTG
AATTTTAATCATTTTTTCTTTACAGGCATAAGCTCCCGTCGAGATTATTC
ATTTAGTGAAGATGAGAAGGAAATGACTCTAATATGTTGTCCATGGGTCA
TCTGGTGTTGCATTGTATAATTGACTTCGTGATAGAAGAGGGAAAACCTG
TCTTTTATTAAGACACTTTAGTTTATCTTGTAGAAAAAAAGTATACTTTT
GGGACTTGGA Coding sequence (CDS) from alignment at sc0000137:159601..164660- >TCONS_00012117 ID=TCONS_00012117|Name=TCONS_00012117|organism=Clytia hemisphaerica|type=CDS|length=363bp|location=Sequence derived from alignment at sc0000137:159601..164660- (Clytia hemisphaerica)
ATGATGAATATGAAATTTGCATTCGCCGTCTTCTTGATGGTTGCATTTAT
CAATACAGAAGTTGAAGGCAAATCAAAAGCAGATAAAAAAGCTGCAGGAG
AGGAGATCGAACGCCTCGTCGCGATTGGCCAACGCAATGATGTCGAGATG
GGAAGAATTTCCAAACAAAAGGATTCTTTGGACAGCCAATTGCAACGAAT
GAATGCGAAGAGAGATTCTATCAAAGCTCAAATAACAAAAATTCTTGATG
ACAATCTTCCAATCAAACGCATAAGCTCCCGTCGAGATTATTCATTTAGT
GAAGATGAGAAGGAAATGACTCTAATATGTTGTCCATGGGTCATCTGGTG
TTGCATTGTATAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00012117-exon-sc0000137-1575043694:164260..164660 | TCONS_00012117-exon-sc0000137-1575043694:164260..164660 | Clytia hemisphaerica | exon |
| TCONS_00012117-exon-sc0000137-1575043694:163683..163762 | TCONS_00012117-exon-sc0000137-1575043694:163683..163762 | Clytia hemisphaerica | exon |
| TCONS_00012117-exon-sc0000137-1575043694:163042..163242 | TCONS_00012117-exon-sc0000137-1575043694:163042..163242 | Clytia hemisphaerica | exon |
| TCONS_00012117-exon-sc0000137-1575043694:159601..159785 | TCONS_00012117-exon-sc0000137-1575043694:159601..159785 | Clytia hemisphaerica | exon |
| TCONS_00012117-exon-sc0000137-1510915933:164260..164660 | TCONS_00012117-exon-sc0000137-1510915933:164260..164660 | Clytia hemisphaerica | exon |
| TCONS_00012117-exon-sc0000137-1510915933:163683..163762 | TCONS_00012117-exon-sc0000137-1510915933:163683..163762 | Clytia hemisphaerica | exon |
| TCONS_00012117-exon-sc0000137-1510915933:163042..163242 | TCONS_00012117-exon-sc0000137-1510915933:163042..163242 | Clytia hemisphaerica | exon |
| TCONS_00012117-exon-sc0000137-1510915933:159601..159785 | TCONS_00012117-exon-sc0000137-1510915933:159601..159785 | Clytia hemisphaerica | exon |
| TCONS_00012117-exon-sc0000137-1491911889:164260..164660 | TCONS_00012117-exon-sc0000137-1491911889:164260..164660 | Clytia hemisphaerica | exon |
| TCONS_00012117-exon-sc0000137-1491911889:163683..163762 | TCONS_00012117-exon-sc0000137-1491911889:163683..163762 | Clytia hemisphaerica | exon |
| TCONS_00012117-exon-sc0000137-1491911889:163042..163242 | TCONS_00012117-exon-sc0000137-1491911889:163042..163242 | Clytia hemisphaerica | exon |
| TCONS_00012117-exon-sc0000137-1491911889:159601..159785 | TCONS_00012117-exon-sc0000137-1491911889:159601..159785 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000137 | supercontig | sc0000137:159601..164660 - |
Blast
The following BLAST results are available for this feature:
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