TCONS_00012121 (transcript) - C. hemisphaerica

Overview


Name	TCONS_00012121
Unique Name	TCONS_00012121
Type	transcript
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	877

Sequence

The following sequences are available for this feature:

transcript sequence
transcript from alignment at sc0000137:332226..337532-

transcript sequence

>TCONS_00012121 ID=TCONS_00012121|Name=TCONS_00012121|organism=Clytia hemisphaerica|type=transcript|length=877bp
AAGGGTTTTTGCTTAGCAACTCACGTGTTTACATTCAAAAGGACAgcttt
caaatcaaaacaaactttacattttatattttattttgcatTGGTTCAGA
TCATTACTGATTACGGTGGTGGCTGGTGCTCctccttttttaattttttt
atagagCTTTTTAGTATCAAATATGCCTCGTGATCCTTACCCTTTTCCAA
AATTCGAAAATGACAATGACTTTTCATCGAGCTCGCAACTGCAGGCTCAA
AACCAAAACAATGTGATGGATTCATCTGACCAATGGAATAGACTTTATGA
GAAAAAGACTTTAGCAAGCTCAAGGCGTGAGGTTTTCCATCATGACCCAC
AGGCACCACGTGATAGTTTAGATTTCGTCATCAAATCGATCTACGATCAC
CATTCAGAATTTCTTCAATCCAGCGCTGAAACACTTTACCAACCTGAAAC
TCTGGGCTTACCACACGGACGTAAGTTGAAGAATCGAACTACACCAAATA
CAGAAAAAATGACCGACATCAAAAAAGACAAACTCAAAATTACCGTGTCT
GAAAAACGCGAAAATATCGACAGCGTCAAAGGAGCTATACcAAGCCATCA
CAGTGCAGCTACCAACAGAGGTTATTCGCGTAAACACGATGGGGGATTTT
ATGGTTGTTGACTTGACATACTACAAAAccaaatatttgtttatataaTT
CGAATAACATATGAAATAATAACATAAATTAtgctgtaattttttttcta
attctctttttttgtttttctttgcattTATTATCTATTCAGTATCGGTA
ATTTTACTCTGAGCTGAAATCTCAAATATCTTATATCATATTTCTGATTA
ATCGAGATTATCATTTGCGTATTTAAC

Run BLAST on NCBI

transcript from alignment at sc0000137:332226..337532-

Legend: exon

Hold the cursor over a type above to highlight its positions in the sequence below.

>TCONS_00012121 ID=TCONS_00012121|Name=TCONS_00012121|organism=Clytia hemisphaerica|type=transcript|length=5307bp|location=Sequence derived from alignment at sc0000137:332226..337532- (Clytia hemisphaerica)
AAGGGTTTTTGCTTAGCAACTCACGTGTTTACATTCAAAAGGACAGCTTT
CAAATCAAAACAAACTTTACATTTTATATTTTATTTTGCATTGGTTCAGA
TCATTACTGATTACGGTGGTGGCTGGTGCTCCTCCTTTTTTAATTTTTTT
ATAGAGCTTTTTAGTATCAAATATGCCTCGTGATCCTTACCCTTTTCCAA
AATTCGAAAATGACAATGACTTTTCATCGAGCTCGCAACTGCAGGTATGA
AATATTTTCTTAATTTTGTTTTCCTTTATATTATTTATTTTATTTGACTA
TTCACTTATCTATTTGGGGAGAATAATAGTTTTTGTGGTTTGATTTGGTC
TCAAAACAGCTTAAAATAGTAACTCTTAAAAACGTATGACATGGTCGATA
CCAAAAAGTGCCGGGGGGCGGCCATGGACCATGGACTAAAGTGTATACAG
ATAAATAAGGGTGAATGTCACTAGTCCGACAGTAAAAAATAGTCCGAATC
TATAAAATAAATTTAGAATTTAGAAGTGTTTTTTACCGACGTCACTTTTG
TCCGAAAACGAAAGAATTTAGAGTGTCAAATGTTGAATACTAGGGTTTTT
CACTGAGATAATATTAATAATAATTCATTTTAGCAGCATTTTGACATAAT
TAGAAATAAAGGACCAATCAAATTTGCGCAAAGATAATTTATAGCAAAAA
GAATGCACCGTCTTTAAGGGTCCCTTTTTGCATGTTCAGCGAATTATGTT
ATAAATAAGGGTTGTAAACCACAAACTTTAATTCCAGCCCCCCCCCCCTA
AAGAAGGGTCGTAAAAACAGCTAAATCCAATTTCTTGACTCTTAAAAGCC
TAATCCTAATAAGCTTCCCAAAATTTAAGAAAAGTTGGGTTTAGGGACCC
AACCTCAAAGTCGGAGCTTTGGATTTTTATAAGAACGTGGTTGCTTATAA
AAGATGTGCTTCCTCTTCGGCGATTCATATTTTGTTTTTGACTCGTTGTC
GGACAAAAGTGTTGTCGGAATACTGACGACCTCCTGATAATAATTGGCAG
TGGAAATAAGAATGCCTGTAACTTTTGATAGTCAACTATAATTATGAAAA
TATTTTTTGCTTGTTTTAGAGAATCAAAAGCACTAAATTTTAAATGTATA
ATTTTTTAATTAATAATTAATTCCGGATTACAGTATTAGCGGTTACTGTA
AATTTGTGATTGCAAAAATTAAGCTTTTTTTCTACTTATGCTACAACGTT
TATTTGTACACCAGTGGTAGTTCAACCTTAGATAAAGAAGGTTGTCAAAC
TTCAAGGCAAACAGAAACTTCCTTTGGAAGATATCAGAGTCGAAATACCC
CTTGGTAGCACTTTTCTGTGAAATATCAAAGTGCAGTTCTCTGTGTAGCC
AAGGTGTCCAGGTTTCAATTTCGATTAATTGAGAGAGTAAGTAATATTTC
AAACCAGATGGTATATGGTATTGTATGAGAAGACAGAAAACCATTTAATA
GTTAGTTAGGGTTAAAGTCATTTGGTTGATGACCATGGAGAAATAAAAGA
TACTCTTGCTGTTTTTCAATGTGCAAGCATTTTGAATTTTCTTTCTCTTC
CAGGCTCAAAACCAAAACAATGTGATGGATTCATCTGACCAATGGAATAG
ACTTTATGAGAAAAAGACTTTAGCAAGCTCAAGGCGTGAGGTTTTCCATC
ATGACCCACAGGTAATTTATTTTGCAAGCCATTAGATGAATTTGTAAATT
CATTACGTTTGGTGTTATCCAAGTAAACCAAATATGGATATCCACTGAGT
TGATAAACTCGAACTTGTTTAGATTGATTCAATAAATGTAGACTGAGTAT
CTACTTCTATTAATTTTCATGATTTCTAGTTGTGAAAATTCTAGGAGTAT
CTATCAAAATCTATCTTTAAGTTGTTTGAAATTTCCTGGTCGCAACAATT
AAGGAAGCCTTGCTAAACTTAACAACTTATTTCATAAGTCAATTTCAAAC
ACATGTTAAAGATCGAATTTTACACTCTAAACAAAAATTTTGTATCCAAA
CCCCCTGTTTGGCTGAAATTGCCACACTAAATAGTAAAGCCTTAATCTGC
GAAAGAGGCTGCACTTTTGGTGCAATTTGTTGAAAATAGAAATTACAGAG
CAATCCAGACGAGTACTTTATTTTTATTATCAATTTACATATAAATTAAA
GTTGAGATTATAATTGTTTGATACTCAAAGTTTCACGCAACTTTTCGTTA
CGATCTTCAGTCAAAAAATCTAATATTATCAAAATATTATCAATTTGCAA
ATTATAATTTTATGAAATCANGCAATCCAGATGAGCTGATTTATTTTTAT
TATCAATTTACAAATAATAATTTTATAATATCCTCTTTTTAAGGCACCAC
GTGATAGTTTAGATTTCGTCATCAAATCGATCTACGATCACCATTCAGAA
TTTCTTCAATCCAGCGCTGAAACACTTTACCAACCTGAAACTCTGGGCTT
ACCACACGGGTAAGTCACTTCAATATACAGATTTCGAATTATATTTTTGC
ATAGCTTTTGCTTTGATCCCATGTAATCTGCATGAAAAAAAGTTAAGTGA
ACAAAACAAAAAGCAGTTGTTAGACAAGCAATTTTAGCTCATTTTTTTAG
AAATAGAAAAACATTTTTTGAATGAATAAAAAGAGAAATAAAAACGTCTA
TAAACATTTTATAATGCATTTACACTTGTCGCTGATATTTGTTCGATTGC
GTAGTTTAATTTGAAACATAAAACACGAGTGCTACTTTTTAATGCCTTTA
ATTTTCGCAGATGAGATGGAATTTTTATAACATACTTTAATAATTTGTCA
TTTGAATTATAATAAAAATGATGCATTCTTTAGAAAAAGTAACAAAATTG
GTTAACGACCAACCAAATCCAATAAAAGCTTGTAAAAACTTCATGTCGTC
CCAATTTTCAACTTCACAAGATGCATTTATTTGGAATTTGTTTTGTGCTA
TAAGTTTTAATTTTCCCCCCCCCCCCTGGGTGTTTTTCCACTGGCGGCTT
AAGCTAACAGGGTTAGCAAAACGTCCAATAAAATGCTGAACAGCCAAAAA
CTATTCATATAAATTTGTGGATGAAAAGAGATGGTTACACGTCAATATGT
ACTTTCATTTCCCATTGCAACACAGGAGAAAAATCGAAAAATATTTTGTT
TTTCGTGATCCGCCTATCATCGCTCTTTTGTTCTTTCAAACATGCCCTCG
AGCATGTATCTAGTGGATTAGAAAATTCGTGCAAAATACAAAAGATTTAA
CGAATTTTCTCCTGTGTTTTTCTCCTGTGTTGCTTTGGGAAATACAATAT
TTTTCTGAAAAGAAAAAATTAACGTGCAGCCATCTCTTTTCATCCAAAAA
TTACATGAACAGTTTTGGGTGGGCTATTCATCGTTTTATCAAAAGTTTAA
TTCTGTTAGCTTAAGCTGTCAGTATAAAAACACCCCCTGTTATCAAAGTC
TCTTGGTAGATCGGTAAATAAGTAGGGGCAATTTCTAACAATGGTTTATA
GAATATTTATCTCAGCTCAAGTTCCAGTATTGATACCCTTGATATCAGGA
TCACCACAAGGAAGAGATCAGGGGGAATCTTTTATTGAATGCTACAGTAC
AGCGTCTGTTTTTTCATAGTCATTATAAAAAAACCCGGTCTGGAAGGCTT
TTGTTTCTTTCTATTGCTAACCGTTAGAGCTTGCGTACCTTAAATTGATT
TGTTTTACATAGTTTTTGATCATGTGATTATAAAATCATCCAATCCCAAG
AGTCGAAAATGGTAACGTGATCAAAAAGTATGCAAATTGCAACTTGTCTT
TCATTTACAACAAAGGAAAAATTGACAATAAAGCTTAAACGATACATTAC
CAGACCAGGATTTTTTATAATGACTATTGTTTTTTTAAGCTTAGAGAGCT
ACAAGACTTTCTTGAAAGGAGTACTGGCAACTATCAAAATATCTTCAATT
AAATTGTTCATTATTTTTAGACGTAAGTTGAAGAATCGAACTACACCAAA
TACAGAAAAAATGACCGACATCAAAAAAGACAAACTCAAAATTACCGTGT
CTGAAAAACGCGAAAATATCGACAGCGTCAAAGGAGCTATACGTAAGTTG
GTGCTATTGATACCTCTATTCATGATATGCACCACTTGAGAGTCTTCTGA
GAACTTTTTTGAGAACTTTTCCACCCAATAAGTCACATAAACAATAGAAA
AAGTGACGTATTAGGTGCAAAACAAAAGGACAGAAAAGTTGCATAATTTC
GTCATTGCAGTGTTGCATATCATGAATACCATTGATTTCAAAGCCGGGGG
GGAGGCTAGATCCGAAACTCCTGGATGGGAAATGAAGCCACATAAATCAC
ATCCAGAACACGTGACCTGTGTTTTTTTCAAACAAAAATTCCAAGTGCGG
GGAAAACATAAGTTTCACTTTTTCTTACTTTGGAAAGGTTGAAGTTTCCT
CTCTAGCCTCTTCGGGGCTTCAAACTCAATGCTCTATATCTTGTTATGGC
TTGCTTTTATAAGTCACTCAATGGGAATGAGAACTTTACGTGAAAAAAAT
AGTGGTTGAATTCAGGATACACTGTACACACCTGCGCATTTGCTTACACT
AGCCTGAGCAGCATCTCCATTTTTTAATCACCCGATCTTGTCTGGGCGAT
ATTAGGCTGCCCCTTCTGATATATTTTGAGGCTGCGTTTTGTGTACGAAA
TTCTCGTCTTTGTGTTTTTGAAGTTTGAGTTTTAAAAATTTGATTAGCTT
GATTAGTAATTTTTATACGAGAGATCATTAATTTTAATTAAATCTTTATG
GCTAGACGTTAATACAATCATTAAATTTCTGAAGCTTTTTAAGAAAATTA
AAAAAGGTCGCCTCAAAGTTGGGGTAACTCTTGGACGGGAATTTCATACG
CGATGCGCATCCCTTAGGACGATATGGGATCATCTGATTCTTCTCTGACT
CGCTTTTTCCTCTTTTTTAGCAAGCCATCACAGTGCAGCTACCAACAGAG
GTTATTCGCGTAAACACGATGGGGGATTTTATGGTTGTTGACTTGACATA
CTACAAAACCAAATATTTGTTTATATAATTCGAATAACATATGAAATAAT
AACATAAATTATGCTGTAATTTTTTTTCTAATTCTCTTTTTTTGTTTTTC
TTTGCATTTATTATCTATTCAGTATCGGTAATTTTACTCTGAGCTGAAAT
CTCAAATATCTTATATCATATTTCTGATTAATCGAGATTATCATTTGCGT
ATTTAAC

Gene-mRNA-Prot

This transcript is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
XLOC_006815	XLOC_006815	Clytia hemisphaerica	gene

The following exon feature(s) are a part of this transcript:

Position

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
sc0000137	supercontig	sc0000137:332226..337532 -

Expression

Values :

    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
24.3854	26.1074	43.0272	44.2884	470.36	379.061	118.546	128.066	57.1537	85.0174	67.0015	86.8962	10.1715	13.3987	4.36897	4.89803	5.04076	5.20437	17.4769	14.901	7.5715	8.77046	8.58798	10.8229	45.7585	32.2266	24.4181	27.9505	5.11166	3.16519

Blast

[Close]

BLAST of TCONS_00012121 vs. Swiss-Prot (Human)
Match: CA194 (Uncharacterized protein C1orf194 OS=Homo sapiens GN=C1orf194 PE=2 SV=1)

HSP 1 Score: 90.8929 bits (224), Expect = 8.361e-22
Identity = 53/167 (31.74%), Postives = 94/167 (56.29%), Query Frame = 2

Query:  179 RDPYPFPKFENDNDFXXXXXXXXX----XXXXVMDSSDQWNRLYEKKTLASSRREVFHHDPQAPRDSLDFVIKSIYDHHSEFLQSSAETLYQPETLGLPHGRKLK---NRTTPNTEKMTDIKKDKLKITVSEKRENIDSVKGAIPSHHSAATNRGYSRKHDGGFYGC 658
            RDP+  P  +ND+ +    +   +    N  ++    + W+RL    T+ S RR+ ++ DP+ P+D LDF + ++Y+HH+   ++ +E L   +T    +  K++      TP T  +T +    ++  ++ K+E+I S++G+I S H+AATN GYSRK DGGF+  
Sbjct:    5 RDPFQQPTLDNDDSYLGELRASKKLPYKNPTHLAQQQEPWSRLNSTPTITSMRRDAYYFDPEIPKDDLDFRLAALYNHHTGTFKNKSEILLNQKTTQDTYRTKIQFPGEFLTPPTPPITFLA--NIRHWINPKKESIHSIQGSIVSPHTAATNGGYSRKKDGGFFST 169

The following BLAST results are available for this feature:

BLAST of TCONS_00012121 vs. Swiss-Prot (Human)

BLAST of TCONS_00012121 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1


Match Name	E-value	Identity	Description
CA194	8.361e-22	31.74	Uncharacterized protein C1orf194 OS=Homo sapiens G...	[more]

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TCONS_00012121 (transcript) - C. hemisphaerica