TCONS_00012149 (transcript) - C. hemisphaerica

Overview
NameTCONS_00012149
Unique NameTCONS_00012149
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length673

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00012149 ID=TCONS_00012149|Name=TCONS_00012149|organism=Clytia hemisphaerica|type=transcript|length=673bp
gttctttagaaaaagtaataagattgttttattacatcttaacgtcCAAC
CAAATCAcgtaagagcttgtaaaaactccagcttgtcccaaagcTTTACA
TTCTACCTGTTAACAAATTTCCATTAAATTTAAATGAAGGTTGTGGAAGT
AAAACTCAAGGGACCTTGATGCTGTAAACtcaatttattatttaattgAA
TGCTGATCTAATTGAAACcttcttgaaaaattaaatactgttttgacaaa
ttgttttttcatttctctccatccataaaatattttattgttctgaagaa
ttttctccgtcagcagCATCAGCCATATTTCTTTCGTCATTCTGCACGGC
TATTTTTGCAGTTTCGTTCTGAAGATTTCGAAGGCTTTTATCTTCTTCCA
TGCACCGTTCAGCAGATTTCATTCCAAACAAACCGGTCATCACAAAATCA
AGATGGTTTCTTCTCTTGATGATCACATCTGTTTTCTTCACAATGATTTC
TGTCGCATTCTTTGCCAGCGCAAACGAATTTTCTACCATTACTACAATCA
TATTATTCTCCATTTTGACTAGCGTGGTTTCAAATATTGTTCAACCCTTT
TGCTTCTATGGTTAGTTTGAGACTGGCTATAAATAAAGTTATCCAGGAGG
TTTCAAtcgtatatttatatttt
Run BLAST on NCBI

transcript from alignment at sc0000137:320481..321153

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00012149 ID=TCONS_00012149|Name=TCONS_00012149|organism=Clytia hemisphaerica|type=transcript|length=673bp|location=Sequence derived from alignment at sc0000137:320481..321153 (Clytia hemisphaerica)
aaaatataaatatacgaTTGAAACCTCCTGGATAACTTTATTTATAGCCA
GTCTCAAACTAACCATAGAAGCAAAAGGGTTGAACAATATTTGAAACCAC
GCTAGTCAAAATGGAGAATAATATGATTGTAGTAATGGTAGAAAATTCGT
TTGCGCTGGCAAAGAATGCGACAGAAATCATTGTGAAGAAAACAGATGTG
ATCATCAAGAGAAGAAACCATCTTGATTTTGTGATGACCGGTTTGTTTGG
AATGAAATCTGCTGAACGGTGCATGGAAGAAGATAAAAGCCTTCGAAATC
TTCAGAACGAAACTGCAAAAATAGCCGTGCAGAATGACGAAAGAAATATG
GCTGATGctgctgacggagaaaattcttcagaacaataaaatattttatg
gatggagagaaatgaaaaaacaatttgtcaaaacagtatttaatttttca
agaagGTTTCAATTAGATCAGCATTcaattaaataataaattgaGTTTAC
AGCATCAAGGTCCCTTGAGTTTTACTTCCACAACCTTCATTTAAATTTAA
TGGAAATTTGTTAACAGGTAGAATGTAAAgctttgggacaagctggagtt
tttacaagctcttacgTGATTTGGTTGgacgttaagatgtaataaaacaa
tcttattactttttctaaagaac
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_006837XLOC_006837Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00012149-exon-sc0000137-1491911889:320481..321153TCONS_00012149-exon-sc0000137-1491911889:320481..321153Clytia hemisphaericaexon
TCONS_00012149-exon-sc0000137-1510915933:320481..321153TCONS_00012149-exon-sc0000137-1510915933:320481..321153Clytia hemisphaericaexon
TCONS_00012149-exon-sc0000137-1575043694:320481..321153TCONS_00012149-exon-sc0000137-1575043694:320481..321153Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000137supercontigsc0000137:320481..321153 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.0764607	0.0745612	0.173145	0	4.02135	2.68884	5.40662	7.54641	12.3065	8.06074	3.33099	4.22656	1.72895	1.00339	0.130251	0.046593	0	0.0588318	1.05663	0.085053	0	0	0.175337	0.159406	6.56739	7.32655	0	0.111891	0.594058	0.0864644
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00012149 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
back to top