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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00012184 ID=TCONS_00012184|Name=TCONS_00012184|organism=Clytia hemisphaerica|type=transcript|length=1024bp
TGATGGGTTTTCAATATACACCTGGCTCATTGTTTTGACGCAGtaaAAGT
TACACACAAAATGACCAGTTATCAAAAATCAATACACCATTATTCAAACT
TCAAAGTTCTTGAAGATAAAGGAACATTTGGCTCCCCATTTACACAGAGA
GCCAAAACTaccaaaaagaaaacagaacCACCCACATTGAAAAAGAAGAT
CTATTGTGTTACGGGTACCGCTCCGGCACCCTGTAAAGACTTTTTCGAAC
TAGTCGTTCACGTAGATGAAGTAATATTTCGGAAATGGCGCGTCAAGTTT
AATAAAAATGGTAAAAGTGGCGTCCCATCAGAAGATCGTATGAACCATGA
GCGGTTTTTAGATAGTGATGTCGTTCAGGGTGAAATTGAACGTAATCTAG
GCGGTGACGCCCTACATATGGCGGTCGGTCATATCACTCAAGATTGGTTG
CCAAGGTTACCTATCAAAGCATTGACAAACATTACGTCATATTTGGAACT
GTCCGATATTTCAAGATTGCACCAGGTGTGTTCAGTGTTCAATAAACGTC
TCCAACAAGATGAAATATGGAATGATCTTCTGTCacttcattttgaaata
attgtGGACGAAAATCTACGCGCGAAAAATCCTCGAAAATCACTGAAATG
GATATACAGACAAGAACTCATTAAAATGAAGGAAAACGAAATTGATTGGG
ATAACATCTGAGAACTGTTTTTTCAAATCGAATTGAGTATACAGTCaatt
ttctctaattcgaacctctactattcgaatttttctataatttgaactaa
AGTATTGGTCAGTTTAGCTGGAAAGTAgtatacatttttttaataagcaa
ccgAGTTGTTAAGTTGCTAAGGCTCCAGCCCTGagaatggccaaaatatt
aagcaACTTTGCCTTAGCAACCTAGAAAATCgaggttgcttataaaaaaa
tgtgtatgaaATAGTCTCTGTAATTTGAAACTTTCGAAGAGAATTCTTCT
GCCAACTGTAATCTTGATTATTNN Run BLAST on NCBI transcript from alignment at sc0000141:67880..75683- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00012184 ID=TCONS_00012184|Name=TCONS_00012184|organism=Clytia hemisphaerica|type=transcript|length=7804bp|location=Sequence derived from alignment at sc0000141:67880..75683- (Clytia hemisphaerica)
TGATGGGTTTTCAATATACACCTGGCTCATTGTTTTGACGCAGGTATACA
ATGTCACAATTCTTTACTATGATTCATTAAATCATGGCCTCAATATGCTC
TTTTTCGTGTAAACAAGCTCATTGGTGCAAATTAATGTCCTTGAGCTTTC
GTCCTTTATCTCCATAAGGTTTTTCAATCATTTTTTTATCTCTTGCATTT
CGATTCATACTTTTTAGGCACTGAATGGACTTCTTATCTCCCTAATAATG
AAGTATCTCAGCAATATCGTGCGTCTATTCATGATTGCGTCATCTATGCT
ACTGACCACACTTCTATCAAGTGTCATCTTTGGTTACAAGCCAGATATCT
ACTTTGCTTTGGCCTTTCTTTTGGTTATATTCGCCCTCTATATATATCAT
TTTGATGGTTCACAATCTGGTATCAAAACGAACAAGAAAACAGTGAAAGA
CATTTGAAGATGAAATAAGAAGAAGATAATTTTTATTGGAGGTACACATT
AGTTTATAAGAACATCCAGAATTTTTAAAGCTTTTGGATGTTCTTAACTT
CTTCTTATTTTCACCATGTTTTAGAGTCTGCAAAGCCTTAAAATGTTCTT
AGCTGGGCCTTCATGTAGGTTCTGCTTCTTGTTTTAGCTTTAAAAGCTGA
TGGAAGAGGCCCCCAAGCGGTTTTCGTTAAGACGTAATAGCGACTTTTTT
GCAGCGTGATAACGTGATTTGGAATTTTTTTCTTCGTGATTGCGTGATGA
GAAGTCAAAACGTGATCGTGATTTGAAAAATCACCACCCCGATACACGAG
TTAGACTTTTTCAAAGGGATGCGTGATTATCCAAGTTTTTTGTTGTTTTG
TCTGATCGTGATTGAAGGCAAAAAATTGCGTGAGATATCGTGATCAGAGT
TACCGCTGGGCTGGGCCTCTATGGAACACGGTGAAATAAAGGAACATGAG
AACAGGAATGACCCTGTGGATATTGATTGTACCGAATTTTAATACTGTAA
TGAACAAAATGATTTATGAATTAGATATTTTTCTAAACATTTTATATACA
TTTATAAGACTTATTTATTTGCACTTTTTTTATCAAAAGAAAAATCTATT
CGTCCATTCAAAGAAATTTATGCATGATTTTTCATTTCATTCACCTCAAG
TAATTTAACAGAAACTCCCTTCGCCACCTATCGCTTAGATATTGGGGTAT
GCCAGTAAGACTGTTGATGTTCTCACCCTTATAAAATTGGTAAAAATTAT
ATTTTGTATTTATCGTGTAAGCCTTTCTACTCTACACGTTTTTTTTATAA
GAACATCCAAAAATTTTTAAGCCTACGGATGTTCTTAACTTTTTGGATGT
TAAGCCTGAAAATGTTCTTAAAATGTTCTTATTTTCTCCATTTTGTGACC
ATTTTTACCCATTTTTCTAAAAGATCGGGTGTTTTCGAATCTGAAAAAAT
GTGTTCTTCTTCTTATGTTCTTATATAGTTTGTTCTTATAAAAAAAACGT
GTACGTTAAGAGTAAAAGCATCAGCGAGATATCAAACAAAAGATTTCATT
TTGACCTAAAAAAAAAAGCTCTTTTGTGAAAAAATGCTTTTAAATGTTTG
CGAAATTCTTAATTAAGACCATGAGCAATTTAATCTTAATTAGGGAAAGA
ATATTATTTAATTCTTTCGATTTCCCACAGCAATAATGATTTCTTTTTGA
AATTTTGAAATATCAAAAATTCCGTTTTTCTTCTTTATCATGATTTTTCC
ATGTTTCGCATCTTGTTGTTAGGTTTGCAGAAGGAAAACTTCAAAGTTGA
TGGATGAGGTATTTACATTTTTATCACTTTTACAATTTTCATATTTTTAA
AATTCCACGATTGTGTAGTGAGTTTCAGGAATATTTCACGTGCATAAAGT
TTTCAAAGAAGAACATCCAAAATTTTCGAAGCCTTCAGATGTTATTAACT
TTTGGAGTTTTAAGCCTAAAAGTGTCTTAAAATGTTTTTAATATTTTAAC
CATCGGAGCCTTGTGTTCTTATGTAGTTTGTTCTCGTAAAAAAATAGAAG
AACATTATAAGGTATTATATAGAGGTATTATTTATTAAACCTAAAATTCA
TTAGTTTTGCCCTAGAAACTGCAACAAGACAACAAGGCTTAAAGTTCCAA
AAAAATGAGATTAGCCATGCCTCATCAATCAGAGTGTAGCTGAGTCTAAA
TATAACCAAGGACCAATGAGTGTTCTGCTAAGGTCCCGGGGGGGGAGCAC
TCAAGGTAAATGACCTACCAGACGTTCGGCCCTTAAGGGTAGGTTTTTCA
TAGTTCAGCTAGTGCACTGTAAGGGTAGGAAATTGTGATAAAAGGCATTT
TTTGGTAAAATTGGCACAAAATTGGTCAATTTTGGAGGAAAAATTCCACA
TTTTCTTGGAAAATTGCGACAAATTTTGAAACAGTGCACTTTAAGGGTAT
GATTTTTCATGGAAATTCACTGCACTGTAAGGGTCCGATTTTAGAAACCA
AATTTTGGGTCGAACGTATGGTTGTTTTCAGATCGAGTGCCCCCCCCCCC
CGGGGCTAAGGTTAGAGATTTCCAATAAAGGCCATTGGTCGTTGGAAATT
GCACACACGCACAACAAACAATACGTGCACGTTTTTTTATAAGAACAAAC
TATATAAGAACATAAGGACTCGATGGCCAAAATGTTAAGAACAAGTTTAG
AACATTTTGAGACTTTAGGACTCTAAAACACCCGATTTCTTAGAAAAACG
CACAAAAATACCCACAAAACGGCGAAAATAAGAACATGTTAAGAACATTT
TTAGGCTTAAATCTGAAAAAGTTAAGAGCAACTGGAGGCTTCAAAAATTT
TGCATGTTCTTATAAAAGAAACGTATATGGGAATTTGTGAAGGGTGCACA
GGCACAGGGTCTCTGGGTTTTGTACCCGTTTAGTTTCAGGGTATAACCCG
ATGACTTCTTACTCCGAAATATGAAGCTATTGGTTCATCTTTTAAAGTAA
TAATCACGTTCAAGCTAACAATATAAAAGATGGGGAAATTTTAGAAAGTT
TGAAATATGAGTCTCCAATATATTACTTTTCGAATAAGACACTCCTTTGA
AAATCATTTTAATCTGCAGTTCCTTTTCAAAAAAGTATGTTTTTTCATTT
TCTTTATTTCTCATTTTCACAACTATTTTTGGAGTGTGCCATTTTATATT
AAAGCGATTTCTACATTCTTAACACTTTATTTAAATTTGGTTTTGAGATT
TTAACTTCAACTTGATTTCCTATTTGCTAACCTTGAATGTAGTTTTTTGT
ATAGCTCTGACGGTGCTGACAAGTTGGTTGCAATTTGTAGCTTGACTTTT
CCGATAAATTAATATTTCCATAACTGTCTTTGAAGATTTTTGAGGATATT
TCTCGCTCTGTGTTTTCTAGGCAGTTCTGCTTTTTGGGTATTTCTTCTCG
GACCGAAATTGGGTCGAAGGATCATCCTTCTTAAATTTAACATACTTCCA
AAGGCTCATAATATACTACATGTGTTTTTATTAGTACACGTTTTTTAGTA
AGAACATCCAAAAATTTTGAAGCCTTCGAATGTTCTTAACTTTTTGAATT
TTAAGCCTAAAAATGTTCTTAGCATATTCTTATCTACGCGCCATTTTTTG
AGTATTTTTTGAGTATTTTTCTAAGAAATTAGGTGTTTTAGTGCCCGCGA
ATCCTTAAAATGTTCTTACTTGTTCTTAACATTTTGGCAATCGAAGCCTT
ATGTTCTAATATAGTTTGTTCTTATAAAAAAATGTGTAAAACCAAATTCA
TATAATGCTGCAGCTTTCCCGCCTTACCGGGGTTCATGAATTCGCTGGAC
GGCTTCCAGCGCTCCAGGTCCAACATTGCAGTACTTAGTTCTTGTGTTGG
ACATGTTTTTTTTCTTCATAAGAACAAACTATATAAGAACATAAGGGTTC
GACGGCAAAAATGTTAAGAACAAGTTAAGAACATTTTAAGACTTTATGGA
CTCAAAAACACTCGATTTCTTAGGAAATTGGATAAAAATGGTAAAAAATT
GGTTAAGATAAGAACATGTTAAAAACATGAAGGCTTCAAAAATTTTGGAT
TTTCTTATAGAAAAAATTATTAGTTTTCGTCCTGAGTATCCAAGCCATTA
CTTAGACTTCAGATTTCAATTTTATTTCTAAAGTGACTGTTTTTCTTGTA
AAACCTCACTCTTGAATTAAAACCTTTGGAAAATCCTTTTTATGAGTTTT
GAAAAATATACAATTTTTTATAAGAGCAATTAAATAAGAACACCAGCCTC
AAATGGGCGAACACCTAAGAACAAATTAAAAACGCTGCCAGCCTAAAATT
TCGGGTTATAAGATGTTGACTTAAGTGAATGAAGAATTGATTGGCTGAAT
GAAGAAAGTATATTTTATTCATTTAGCCTTGGAAAGATGAAATTGAAAGC
TGCGAAATTTACTGGGTTTCTTATAAAGAGCCTATATTAAGAAATATAAG
CTTTGTCTCACAGTAGCCCTGCTATTTATATATCTCAAAAACCAAGAAGA
ATTATACTTACAACTTGAAGTTTTCATATCTGAAAATATTTTTGACCTTC
TTATTACTTCAGAAGATGGCAAGTGTGGGATTACAATCAAATAGTGATTC
CTTATGTTACAATCATAGTCGAATTATATTGAGATTTTAGTGTATTTTAA
CGTTTATCAGAATTTAAAGAGAATTGCTATTTTAGCACTTCAACTTTCTT
TCATTGAATTTAAAACTCTATATTCCAACTGTAGTTTAACGCGCTTAAAA
ATCATTTGTGGTGTTTAAAATCTCGCAGGGAAATCGCATTTGTCTCAAAT
ATTTTGTCCATGATTGTAGTTATGTGAAAGGGTTATCAGATACATAGTGC
GCTTGGAGATACAGCTGAAGCTCTCTAATTCGACGTTTTACTACTCGATA
CGCTTCATTATTCAATCGAAAATCGAACTAAAGAGCGCGGAGTGTACGTT
AAAAATGTTATTTCAAACTGAGATAAAGTATAGTCTTTTTAATTCGAACC
TTTATAACTCGAATGTCTCCTTAAATCGAACAAGTTTCCTCGCCCCTTCA
GTTAACAATGTCTTATAAACCTTACTCCATAACTCGAGATTCCCTCAACA
TAGAACAAATTTGTGACCCCCGTTCGTATTGGAGTTATAGAGACTCTACT
GTATTTAGCATGTGGTTTCAAAATTTTGAAAAATAAGCTTCCACGTCAAA
TCTTTTTCGCGCAAAATAATTCAGATTCATTGAATTCAGCTTTTGCAAAT
AATTTAGAATTCTCAAAAAATCTCAAAAAGTTAAGAACAGTCAAAGGCTT
CAAAATTTTGGATGATACAGTGCAAGTATTCATTCACAACTTCCTAAAAC
GCTCATCCTTACAAAAGTGGGTCATCAAGTTAAACTGTAAACAAATGACG
TCACTTTTTGAGGGGTGAATTTGGTATCATTTAAAAAAAATAGACATTTT
TTCTTTTAATTCTGTAAGTTGACGTGGGTTAAATATTTACTCTGAAACTT
ATTACTTAACTTTGTGCCAAGTAAAATATAGTTTATATTAGAGAAAAGAA
GGGAAGAGTAATATAAGAAGTTTGGCTTGGAGTAGTATTTTTTTATCACA
ATCAGTAACGTTGGTTGGTCGAGGAAAGCTGGGGGAAGGGACAGTTTCGA
TAGTTGAGATTTTGGCGCCCTTTCTTAAAATTAAATTATCTTTGTAAAAT
GACGCGAGTGAAGTGAGCAAGAAAATGTTTGGGTGTTTTTTTTTCTCTTT
TTGGCTGAAAACTGCTAATTCTAAGGTGTAAAAAAGCAAAGGGGCGCCAA
AATTAGTAATCAGAGGCGCCTTTTCCTACCAGAAAAATCGGCCGTTGCCC
CCTTGCCACCACGCCACGCTACTGATCACAATCTTGTCGTAAAAATGGCA
CTTCAATCCCTATTCAAACTCGACTAGGGAGTTCTTTCTTACGAATTAAA
GTAGAGTGGAGTCTCAATAACTCAAACACGCACGGGGGACACAATAGCGA
GGTTAAGCACGGGTTTATTTTGACCGTAAAGTGCGATACCGTAGGCCTGT
ACATAACTTGCCAAAGCAAACCATGCAAGTGAAATCTTATGTACAGGCCT
ACGGTATCGCACTTTACGGTCAAAATAAACCCGTGCTCAACCTCGCTAAT
CTTGTTAGAGTATTTAAGAAAATTTCGAGTTATGGAGTATGGCTTATAAA
ATCATTAACTGGAGGGTAAAGAAAACTTGTTCGAGTTAAGGAGGTATCCG
AGTTATATTTTTTCCTCTTTCATGATATTTAACCTAGAAATTTTTTCTTT
TTTCTTTTCAGTAAAAGTTACACACAAAATGACCAGTTATCAAAAATCAA
TACACCATTATTCAAACTTCAAAGTTCTTGAAGATAAAGGAACATTTGGC
TCCCCATTTACACAGAGAGCCAAAACTACCAAAAAGAAAACAGAACCACC
CACATTGAAAAAGAAGATCTATTGTGTTACGGGTACCGCTCCGGCACCCT
GTAAAGACTTTTTCGAACTAGTCGTTCACGTAGATGAAGTAATATTTCGG
AAATGGCGCGTCAAGTTTAATAAAAATGGTAAAAGTGGCGTCCCATCAGA
AGATCGTATGAACCATGAGCGGTTTTTAGATAGTGATGTCGTTCAGGGTG
AAATTGAACGTAATCTAGGCGGTGACGCCCTACATATGGCGGTCGGTCAT
ATCACTCAAGATTGGTTGCCAAGGTTACCTATCAAAGCATTGACAAACAT
TACGTCATATTTGGAACTGTCCGATATTTCAAGATTGCACCAGGTAGATA
TAGGAAGCTTTTTTTGGAGTGAAGAAAATCCCTTCCTCACCGATTAAATC
TGATTTTACTCGTTAGACTAACAAACTAACCTATTGATCAATCAGGGCAG
AGGGTGGGAATAACTGGGCGGTTGAGCGGTCGTTTGTTTGACTAAAATAT
GAGCTACGTTGGAGAGCGAGGAAAAGTGGGCGAAATGTTGCTAATAAATC
GCTTTCAACCCATCCCACCGATAATTTCTCTTCGTACACTTGGCTAACTT
TTACTCTCACTTTTTCCGGGTGATATTGTTCTAGCCTCGATTCTAGGCCT
ACTGGCGTACCAGTCTAATTTGCTCGAGTTTCAACTTTTGGTGCGAGAGT
CTATAAAACTTTCTGAGATTTCGTATAGATAAAGCAATCCGATTTGATAG
TTATTATAAACATTTTCCGTATGATTTTTTAATATCCAACATCGATTTTC
TTTAGGTGTGTTCAGTGTTCAATAAACGTCTCCAACAAGATGAAATATGG
AATGATCTTCTGTCACTTCATTTTGAAATAATTGTGGACGAAAATCTACG
CGCGAAAAATCCTCGAAAATCACTGAAATGGATATACAGACAAGAACTCA
TTAAAATGAAGGAAAACGAAATTGATTGGGATAACATCTGAGAACTGTTT
TTTCAAATCGAATTGAGTATACAGTCAATTTTCTCTAATTCGAACCTCTA
CTATTCGAATTTTTCTATAATTTGAACTAAAGTATTGGTCAGTTTAGCTG
GAAAGTAGTATACATTTTTTTAATAAGCAACCGAGTTGTTAAGTTGCTAA
GGCTCCAGCCCTGAGAATGGCCAAAATATTAAGCAACTTTGCCTTAGCAA
CCTAGAAAATCGAGGTTGCTTATAAAAAAATGTGTATGAAATAGTCTCTG
TAATTTGAAACTTTCGAAGAGAATTCTTCTGCCAACTGTAATCTTGATTA
TTNN
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
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| TCONS_00012184-exon-sc0000141-1575043694:75641..75683 | TCONS_00012184-exon-sc0000141-1575043694:75641..75683 | Clytia hemisphaerica | exon |
| TCONS_00012184-exon-sc0000141-1575043694:68841..69322 | TCONS_00012184-exon-sc0000141-1575043694:68841..69322 | Clytia hemisphaerica | exon |
| TCONS_00012184-exon-sc0000141-1575043694:67880..68378 | TCONS_00012184-exon-sc0000141-1575043694:67880..68378 | Clytia hemisphaerica | exon |
| TCONS_00012184-exon-sc0000141-1510915933:75641..75683 | TCONS_00012184-exon-sc0000141-1510915933:75641..75683 | Clytia hemisphaerica | exon |
| TCONS_00012184-exon-sc0000141-1510915933:68841..69322 | TCONS_00012184-exon-sc0000141-1510915933:68841..69322 | Clytia hemisphaerica | exon |
| TCONS_00012184-exon-sc0000141-1510915933:67880..68378 | TCONS_00012184-exon-sc0000141-1510915933:67880..68378 | Clytia hemisphaerica | exon |
| TCONS_00012184-exon-sc0000141-1491911889:75641..75683 | TCONS_00012184-exon-sc0000141-1491911889:75641..75683 | Clytia hemisphaerica | exon |
| TCONS_00012184-exon-sc0000141-1491911889:68841..69322 | TCONS_00012184-exon-sc0000141-1491911889:68841..69322 | Clytia hemisphaerica | exon |
| TCONS_00012184-exon-sc0000141-1491911889:67880..68378 | TCONS_00012184-exon-sc0000141-1491911889:67880..68378 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000141 | supercontig | sc0000141:67880..75683 - |
Blast
BLAST of TCONS_00012184 vs. Swiss-Prot (Human)
Match: FBX36 (F-box only protein 36 OS=Homo sapiens GN=FBXO36 PE=2 SV=2) HSP 1 Score: 78.9518 bits (193), Expect = 2.739e-17 Identity = 42/130 (32.31%), Postives = 65/130 (50.00%), Query Frame = 1
Query: 199 IYCVTGTAPAPCKDFFELVVHVDEVIFRKWRVKFNKNGKSGVPSEDRMNHERFLDSDVVQGEIERNLGGDALHMAVGHITQ--DWLPRLPIKALTNITSYLELSDISRLHQVCSVFNKRLQQDEIWNDLL 582
++ G P P KD+++L+V +VIFR W++ +S P E + HE FL++ +QG+ G L + D+L RL L I SYL+L DI+RL Q F K D++W ++
Sbjct: 9 LFETVGQGPPPSKDYYQLLVTRSQVIFRWWKISLRSEYRSTKPGEAKETHEDFLENSHLQGQTALIFGARILDYVINLCKGKFDFLERLSDDLLLTIISYLDLEDIARLCQTSHRFAKLCMSDKLWEQIV 138
The following BLAST results are available for this feature:
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