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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00012226 ID=TCONS_00012226|Name=TCONS_00012226|organism=Clytia hemisphaerica|type=transcript|length=1688bp
cATCTTTCTGTATTTCTTATTACATCAGTCTTCAAGAAGActcattcagc
atgtagcttgtctttcttatgtttttagaattcaaatataaacatcaaaa
taatgctTGGGGAGGATGATCACAACGACCTTGATAATGAACCAATAAAT
GCAGAAGATTTATTTGGAGATGATTTAGGACTGGATGGGAATGAAAATGA
ACCGGCTGCAGATACCGGGGATCCTGATGGCGCACCTGCTGCAGGAAGTG
AAGACCCTTCAACAGGAGCTGCAAAACCAGCaacaaaaaagcgtgtaatc
aaTAGGTTACCAAATTTGAATGATCAATGGCTGATTGATTCAAAACGTGA
AAACATACGCCAAGTTAatggttattttgaaaaaataaaattcaaaaaag
gaaaaggtcaagagcgtgaaaatttaaaaatgattttacaaCGTTATGag
tattttggtcaaaattgttaTCCTAAGTtatgttttaaagattttgttga
aaaagttgaatttgtgaGTGGAAAGTCCAGAATCAAGCATGTTCTACAAG
ATATACGACTTGACCGGAATATGAATCCAGGGGGctcagatgatgatgat
gataatggaGAGGAGCAAGCAATGAACATTGAAGATCCTGTTCCAAATAC
AATGCCAATGAATGATGACCACCAGTCAACAACATCTCCAGCACGAGAGT
CAAGTCCTCCAAACTCTCCTCCCCCTCCACCTCCTAAACCAATGACAGAt
gaaatgagagaaatgatacGCAAAAAGAGGGAAGAAGCTTTAgcaaaacg
taaacaaaaaatGGATGAATCGATGAATAAATCGATCACTAATGAAAATG
ATGAGGAAAGTACTGATAATGAACAACTTATTGAACAAAGCCAAACAAAT
GAAAACAGCAAaagtgaaaatagaaaaaatgaagtcGACGCAAACTCCAC
TctgaaagaaaatgaagaaaacctAGTAAATGAGGAGAAAAACCTTGAAT
CCAATGGATCTAGTGAGACAAAGgagcaagaaaacaaaaaaaatgaaaat
gagaatGAAACTGACTTTGAAATTGATTTAGAAAAAGCTTCAACACAAGA
AAGtgtaattacaaaaaacaatgaaCAAGAAGAGATGAACAAAATCGCTG
AAGAAAGTAAAATggatattgattgattgatgcaTTTTTGATGCCATTAT
Tgaagttttattgtttttatttttattaactaacaaaaagaaaaatttct
tcagTTTTTAATGTTTTAGCTAAAAGAGGTCTAAATATTTGTAGCTTCAA
ATGGACTACAGTTGCTGTTGGTGGTGGTCCATttttaaaattggcaaaat
aCTGTTAGTACACCCAAAAACAGGTGGTATGCTTGGCGATTAACAGCAAA
TTTTGTGTACTAACTGTCAAGAATCAAGcttttttggctaaaaaaatttt
gattttgaggaaaaagttttaatttttttctttcaaaattctgaaaaatt
tttcaatcttaggcgaggccaatttaatttgttgttctacgggcccgacc
gactctatttttgctaaaatcaaaaaaataataaaatatcgaaTTTCTAC
TATactatattttacacactagttatttgtaagaattaaacttgaataaa
gctgaaaattaattcaagaaattgaaaaatcataaaaa Run BLAST on NCBI protein sequence of TCONS_00012226-protein >TCONS_00012226-protein ID=TCONS_00012226-protein|Name=TCONS_00012226-protein|organism=Clytia hemisphaerica|type=polypeptide|length=357bp
MLGEDDHNDLDNEPINAEDLFGDDLGLDGNENEPAADTGDPDGAPAAGSE
DPSTGAAKPATKKRVINRLPNLNDQWLIDSKRENIRQVNGYFEKIKFKKG
KGQERENLKMILQRYEYFGQNCYPKLCFKDFVEKVEFVSGKSRIKHVLQD
IRLDRNMNPGGSDDDDDNGEEQAMNIEDPVPNTMPMNDDHQSTTSPARES
SPPNSPPPPPPKPMTDEMREMIRKKREEALAKRKQKMDESMNKSITNEND
EESTDNEQLIEQSQTNENSKSENRKNEVDANSTLKENEENLVNEEKNLES
NGSSETKEQENKKNENENETDFEIDLEKASTQESVITKNNEQEEMNKIAE
ESKMDID Run BLAST on NCBI transcript from alignment at sc0000141:108379..110066 Legend: exonthree_prime_UTRCDSfive_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00012226 ID=TCONS_00012226|Name=TCONS_00012226|organism=Clytia hemisphaerica|type=transcript|length=1688bp|location=Sequence derived from alignment at sc0000141:108379..110066 (Clytia hemisphaerica)
tttttatgatttttcaatttcttgaattaattttcagctttattcaagtt
taattcttacaaataactagtgtgtaaaatatagtATAGTAGAAAttcga
tattttattatttttttgattttagcaaaaatagagtcggtcgggcccgt
agaacaacaaattaaattggcctcgcctaagattgaaaaatttttcagaa
ttttgaaagaaaaaaattaaaactttttcctcaaaatcaaaattttttta
gccaaaaaagCTTGATTCTTGACAGTTAGTACACAAAATTTGCTGTTAAT
CGCCAAGCATACCACCTGTTTTTGGGTGTACTAACAGtattttgccaatt
ttaaaaATGGACCACCACCAACAGCAACTGTAGTCCATTTGAAGCTACAA
ATATTTAGACCTCTTTTAGCTAAAACATTAAAAActgaagaaatttttct
ttttgttagttaataaaaataaaaacaataaaacttcAATAATGGCATCA
AAAAtgcatcaatcaatcaatatccATTTTACTTTCTTCAGCGATTTTGT
TCATCTCTTCTTGttcattgttttttgtaattacaCTTTCTTGTGTTGAA
GCTTTTTCTAAATCAATTTCAAAGTCAGTTTCattctcattttcattttt
tttgttttcttgctcCTTTGTCTCACTAGATCCATTGGATTCAAGGTTTT
TCTCCTCATTTACTaggttttcttcattttctttcagAGTGGAGTTTGCG
TCgacttcattttttctattttcacttTTGCTGTTTTCATTTGTTTGGCT
TTGTTCAATAAGTTGTTCATTATCAGTACTTTCCTCATCATTTTCATTAG
TGATCGATTTATTCATCGATTCATCCattttttgtttacgttttgcTAAA
GCTTCTTCCCTCTTTTTGCgtatcatttctctcatttcaTCTGTCATTGG
TTTAGGAGGTGGAGGGGGAGGAGAGTTTGGAGGACTTGACTCTCGTGCTG
GAGATGTTGTTGACTGGTGGTCATCATTCATTGGCATTGTATTTGGAACA
GGATCTTCAATGTTCATTGCTTGCTCCTCtccattatcatcatcatcatc
tgagCCCCCTGGATTCATATTCCGGTCAAGTCGTATATCTTGTAGAACAT
GCTTGATTCTGGACTTTCCACtcacaaattcaactttttcaacaaaatct
ttaaaacataACTTAGGAtaacaattttgaccaaaatactCATAACGttg
taaaatcatttttaaattttcacgctcttgaccttttccttttttgaatt
ttattttttcaaaataaccatTAACTTGGCGTATGTTTTCACGTTTTGAA
TCAATCAGCCATTGATCATTCAAATTTGGTAACCTAttgattacacgctt
ttttgttGCTGGTTTTGCAGCTCCTGTTGAAGGGTCTTCACTTCCTGCAG
CAGGTGCGCCATCAGGATCCCCGGTATCTGCAGCCGGTTCATTTTCATTC
CCATCCAGTCCTAAATCATCTCCAAATAAATCTTCTGCATTTATTGGTTC
ATTATCAAGGTCGTTGTGATCATCCTCCCCAagcattattttgatgttta
tatttgaattctaaaaacataagaaagacaagctacatgctgaatgagTC
TTCTTGAAGACTGATGTAATAAGAAATACAGAAAGATg Coding sequence (CDS) from alignment at sc0000141:108379..110066 >TCONS_00012226 ID=TCONS_00012226|Name=TCONS_00012226|organism=Clytia hemisphaerica|type=CDS|length=1074bp|location=Sequence derived from alignment at sc0000141:108379..110066 (Clytia hemisphaerica)
tcaatcaatatccATTTTACTTTCTTCAGCGATTTTGTTCATCTCTTCTT
GttcattgttttttgtaattacaCTTTCTTGTGTTGAAGCTTTTTCTAAA
TCAATTTCAAAGTCAGTTTCattctcattttcattttttttgttttcttg
ctcCTTTGTCTCACTAGATCCATTGGATTCAAGGTTTTTCTCCTCATTTA
CTaggttttcttcattttctttcagAGTGGAGTTTGCGTCgacttcattt
tttctattttcacttTTGCTGTTTTCATTTGTTTGGCTTTGTTCAATAAG
TTGTTCATTATCAGTACTTTCCTCATCATTTTCATTAGTGATCGATTTAT
TCATCGATTCATCCattttttgtttacgttttgcTAAAGCTTCTTCCCTC
TTTTTGCgtatcatttctctcatttcaTCTGTCATTGGTTTAGGAGGTGG
AGGGGGAGGAGAGTTTGGAGGACTTGACTCTCGTGCTGGAGATGTTGTTG
ACTGGTGGTCATCATTCATTGGCATTGTATTTGGAACAGGATCTTCAATG
TTCATTGCTTGCTCCTCtccattatcatcatcatcatctgagCCCCCTGG
ATTCATATTCCGGTCAAGTCGTATATCTTGTAGAACATGCTTGATTCTGG
ACTTTCCACtcacaaattcaactttttcaacaaaatctttaaaacataAC
TTAGGAtaacaattttgaccaaaatactCATAACGttgtaaaatcatttt
taaattttcacgctcttgaccttttccttttttgaattttattttttcaa
aataaccatTAACTTGGCGTATGTTTTCACGTTTTGAATCAATCAGCCAT
TGATCATTCAAATTTGGTAACCTAttgattacacgcttttttgttGCTGG
TTTTGCAGCTCCTGTTGAAGGGTCTTCACTTCCTGCAGCAGGTGCGCCAT
CAGGATCCCCGGTATCTGCAGCCGGTTCATTTTCATTCCCATCCAGTCCT
AAATCATCTCCAAATAAATCTTCTGCATTTATTGGTTCATTATCAAGGTC
GTTGTGATCATCCTCCCCAagcat
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00012226-exon-sc0000141-1491911889:108379..110066 | TCONS_00012226-exon-sc0000141-1491911889:108379..110066 | Clytia hemisphaerica | exon |
| TCONS_00012226-exon-sc0000141-1510915933:108379..110066 | TCONS_00012226-exon-sc0000141-1510915933:108379..110066 | Clytia hemisphaerica | exon |
| TCONS_00012226-exon-sc0000141-1575043694:108379..110066 | TCONS_00012226-exon-sc0000141-1575043694:108379..110066 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000141 | supercontig | sc0000141:108379..110066 . |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR012923 | Csm3 |
Vocabulary: Biological Process
| Term | Definition |
|---|
| GO:0006974 | cellular response to DNA damage stimulus |
| GO:0007049 | cell cycle |
| GO:0048478 | replication fork protection |
Vocabulary: Cellular Component
| Term | Definition |
|---|
| GO:0005634 | nucleus |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| biological_process |
GO:0007049 |
cell cycle |
| biological_process |
GO:0006974 |
cellular response to DNA damage stimulus |
| biological_process |
GO:0048478 |
replication fork protection |
| cellular_component |
GO:0005634 |
nucleus |
Blast
The following BLAST results are available for this feature:
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