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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00012227 ID=TCONS_00012227|Name=TCONS_00012227|organism=Clytia hemisphaerica|type=transcript|length=1373bp
CCACATTTTTATGGGCCTAACCGAGACATGGCTATCATCTTCGCACAAGA
AAGCAGAGCTTGAAATTGAGGGATACGAGCTTTTTCGTAAGGATAGAAAT
CACATCAAATCCAAATATGGAAGACATAGCGGAGGTGTCGCATTTTATCT
TTGAAGCGACGTATCTCCAATGTTTGAGCCAAtacttgaattttcaaatg
gTGTCAATGAAGCTCTACTACTTCATTCAAAAAACCTTAACCTTATTCTT
GGTGTCATTTATAGACAGCCAACAAATATTCTGCACAAATCAACGGCTCC
GGAATTCTTGGACCTTATCTCAGCAATGCAGGACatcatcgaatcaatcg
aaggaAATACCCCCGATATATATCTATGTGGTGATTTCAATATACCCCAC
ACCATAAAAAATGACTCTTACATACCATCAATTAGTTGCAACAAACAACT
TCTAGatgttttaaacaattttaCTTCAATTTTAAACTTGAACCAGATGA
TCCATAAGCCTACTCATTCTAATGGCAATATATTAGACTTCTTACTGACT
AATAACTCTGCCCAATATGACAGGCGGATTTTAAtgcgaaaaagaaagaa
actgagaaaaagatttcaaaatcttaaaactacagaaaaacttgttgaaa
ttgaagtgCTACTTCAAAAATCCTTTGCTCAAGAGAGGAAACAGAAAGAA
GCTCAAGCAACCTCTAAAATCAAATCCAATCCAAAATTCTTTTACTCGTA
CGCTAATCGCTTCTCAAAATCTAAACCAAAAGTTGGACCCTTAATCGATC
CAGACACTAACAAATTGACTAATGATCCCCTGTTGATGGCCAATATCCTA
CAAAACCAATACAAGTCTGTCTTCACCCAACCTCTTCAAAACTACGACCT
TCATCCGCTTGAGTCCCAAATACCAACACTCGAAGATATCAATCTGACTA
TCGAggaatttgtcaaagaaatcgGTACACTGTCACCAACTTAAGCACCT
GGACCTGATGGTTTTCCAGCTATTCTTCTGCTAAAAACTAAAGATAACAT
TGCTCTACCACTTTCAATCATCTGGAGAAACATACTTAACAAAGGAATCa
ctccaaaacttttaaaaactggACATATATCACCAGTTTACAAGAAAGGG
AATCAGGGACTTGCTGAAAACTATAGACCCGTTGCCCTCACATCCCACGT
TTCAAAAgtctttgaaaagattgtacGAGCCAAGATACAGAATCATCTAG
AAGAAAACAATCTGTATAATAATAATCAACATGGCTTTAGGAAAGGCCGC
TCATGTCTTAGTCAATTGCTTCAACACACCGAAAGACTGATCCATTACCT
AGAGAATGGAAACAACATTGANN Run BLAST on NCBI protein sequence of TCONS_00012227-protein >TCONS_00012227-protein ID=TCONS_00012227-protein|Name=TCONS_00012227-protein|organism=Clytia hemisphaerica|type=polypeptide|length=274bp
MFEPILEFSNGVNEALLLHSKNLNLILGVIYRQPTNILHKSTAPEFLDLI
SAMQDIIESIEGNTPDIYLCGDFNIPHTIKNDSYIPSISCNKQLLDVLNN
FTSILNLNQMIHKPTHSNGNILDFLLTNNSAQYDRRILMRKRKKLRKRFQ
NLKTTEKLVEIEVLLQKSFAQERKQKEAQATSKIKSNPKFFYSYANRFSK
SKPKVGPLIDPDTNKLTNDPLLMANILQNQYKSVFTQPLQNYDLHPLESQ
IPTLEDINLTIEEFVKEIGTLSPT Run BLAST on NCBI transcript from alignment at sc0000141:163317..164689 Legend: exonthree_prime_UTRCDSfive_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00012227 ID=TCONS_00012227|Name=TCONS_00012227|organism=Clytia hemisphaerica|type=transcript|length=1373bp|location=Sequence derived from alignment at sc0000141:163317..164689 (Clytia hemisphaerica)
NNTCAATGTTGTTTCCATTCTCTAGGTAATGGATCAGTCTTTCGGTGTGT
TGAAGCAATTGACTAAGACATGAGCGGCCTTTCCTAAAGCCATGTTGATT
ATTATTATACAGATTGTTTTCTTCTAGATGATTCTGTATCTTGGCTCgta
caatcttttcaaagacTTTTGAAACGTGGGATGTGAGGGCAACGGGTCTA
TAGTTTTCAGCAAGTCCCTGATTCCCTTTCTTGTAAACTGGTGATATATG
TccagtttttaaaagttttggagtGATTCCTTTGTTAAGTATGTTTCTCC
AGATGATTGAAAGTGGTAGAGCAATGTTATCTTTAGTTTTTAGCAGAAGA
ATAGCTGGAAAACCATCAGGTCCAGGTGCTTAAGTTGGTGACAGTGTACc
gatttctttgacaaattccTCGATAGTCAGATTGATATCTTCGAGTGTTG
GTATTTGGGACTCAAGCGGATGAAGGTCGTAGTTTTGAAGAGGTTGGGTG
AAGACAGACTTGTATTGGTTTTGTAGGATATTGGCCATCAACAGGGGATC
ATTAGTCAATTTGTTAGTGTCTGGATCGATTAAGGGTCCAACTTTTGGTT
TAGATTTTGAGAAGCGATTAGCGTACGAGTAAAAGAATTTTGGATTGGAT
TTGATTTTAGAGGTTGCTTGAGCTTCTTTCTGTTTCCTCTCTTGAGCAAA
GGATTTTTGAAGTAGcacttcaatttcaacaagtttttctgtagttttaa
gattttgaaatctttttctcagtttctttctttttcgcaTTAAAATCCGC
CTGTCATATTGGGCAGAGTTATTAGTCAGTAAGAAGTCTAATATATTGCC
ATTAGAATGAGTAGGCTTATGGATCATCTGGTTCAAGTTTAAAATTGAAG
taaaattgtttaaaacatCTAGAAGTTGTTTGTTGCAACTAATTGATGGT
ATGTAAGAGTCATTTTTTATGGTGTGGGGTATATTGAAATCACCACATAG
ATATATATCGGGGGTATTtccttcgattgattcgatgatGTCCTGCATTG
CTGAGATAAGGTCCAAGAATTCCGGAGCCGTTGATTTGTGCAGAATATTT
GTTGGCTGTCTATAAATGACACCAAGAATAAGGTTAAGGTTTTTTGAATG
AAGTAGTAGAGCTTCATTGACAccatttgaaaattcaagtaTTGGCTCAA
ACATTGGAGATACGTCGCTTCAAAGATAAAATGCGACACCTCCGCTATGT
CTTCCATATTTGGATTTGATGTGATTTCTATCCTTACGAAAAAGCTCGTA
TCCCTCAATTTCAAGCTCTGCTTTCTTGTGCGAAGATGATAGCCATGTCT
CGGTTAGGCCCATAAAAATGTGG Coding sequence (CDS) from alignment at sc0000141:163317..164689 >TCONS_00012227 ID=TCONS_00012227|Name=TCONS_00012227|organism=Clytia hemisphaerica|type=CDS|length=825bp|location=Sequence derived from alignment at sc0000141:163317..164689 (Clytia hemisphaerica)
TTAAGTTGGTGACAGTGTACcgatttctttgacaaattccTCGATAGTCA
GATTGATATCTTCGAGTGTTGGTATTTGGGACTCAAGCGGATGAAGGTCG
TAGTTTTGAAGAGGTTGGGTGAAGACAGACTTGTATTGGTTTTGTAGGAT
ATTGGCCATCAACAGGGGATCATTAGTCAATTTGTTAGTGTCTGGATCGA
TTAAGGGTCCAACTTTTGGTTTAGATTTTGAGAAGCGATTAGCGTACGAG
TAAAAGAATTTTGGATTGGATTTGATTTTAGAGGTTGCTTGAGCTTCTTT
CTGTTTCCTCTCTTGAGCAAAGGATTTTTGAAGTAGcacttcaatttcaa
caagtttttctgtagttttaagattttgaaatctttttctcagtttcttt
ctttttcgcaTTAAAATCCGCCTGTCATATTGGGCAGAGTTATTAGTCAG
TAAGAAGTCTAATATATTGCCATTAGAATGAGTAGGCTTATGGATCATCT
GGTTCAAGTTTAAAATTGAAGtaaaattgtttaaaacatCTAGAAGTTGT
TTGTTGCAACTAATTGATGGTATGTAAGAGTCATTTTTTATGGTGTGGGG
TATATTGAAATCACCACATAGATATATATCGGGGGTATTtccttcgattg
attcgatgatGTCCTGCATTGCTGAGATAAGGTCCAAGAATTCCGGAGCC
GTTGATTTGTGCAGAATATTTGTTGGCTGTCTATAAATGACACCAAGAAT
AAGGTTAAGGTTTTTTGAATGAAGTAGTAGAGCTTCATTGACAccatttg
aaaattcaagtaTTGGCTCAAACAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00012227-exon-sc0000141-1491911889:163317..164689 | TCONS_00012227-exon-sc0000141-1491911889:163317..164689 | Clytia hemisphaerica | exon |
| TCONS_00012227-exon-sc0000141-1510915933:163317..164689 | TCONS_00012227-exon-sc0000141-1510915933:163317..164689 | Clytia hemisphaerica | exon |
| TCONS_00012227-exon-sc0000141-1575043694:163317..164689 | TCONS_00012227-exon-sc0000141-1575043694:163317..164689 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000141 | supercontig | sc0000141:163317..164689 . |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR005135 | Endo/exonuclease/phosphatase |
Blast
The following BLAST results are available for this feature:
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