TCONS_00012230 (transcript) - C. hemisphaerica

Overview
NameTCONS_00012230
Unique NameTCONS_00012230
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length324

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00012230 ID=TCONS_00012230|Name=TCONS_00012230|organism=Clytia hemisphaerica|type=transcript|length=324bp
GGTCGCGGCATGACTACGTCTACGGCTGACGATCGCCTGATATGTATTGT
TTTTAGAGTCCAGGCTATCAAATTCTTGTTTTCCGAAAAGATGGCGTacc
aaattttatgaaatctCATCAAAGCCATCGCAATTTTGGCTTAAGTAAAG
ACACTTTCAAGACAAGGACGCTTCATAATTGCTGTGAAAGGAACAGCAAT
GCTATTTGGAAGAAATAGTTTATTTATAATTATAAATGTGTTGTTGGAAT
ACCATGAAGAAAGCGATTTCGTCTACATCGCCAAATAGCAGCAATAGAAG
TGAAATTCAAAAACTCTATCGGTA
Run BLAST on NCBI

transcript from alignment at sc0000141:263283..263606

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00012230 ID=TCONS_00012230|Name=TCONS_00012230|organism=Clytia hemisphaerica|type=transcript|length=324bp|location=Sequence derived from alignment at sc0000141:263283..263606 (Clytia hemisphaerica)
TACCGATAGAGTTTTTGAATTTCACTTCTATTGCTGCTATTTGGCGATGT
AGACGAAATCGCTTTCTTCATGGTATTCCAACAACACATTTATAATTATA
AATAAACTATTTCTTCCAAATAGCATTGCTGTTCCTTTCACAGCAATTAT
GAAGCGTCCTTGTCTTGAAAGTGTCTTTACTTAAGCCAAAATTGCGATGG
CTTTGATGagatttcataaaatttggtACGCCATCTTTTCGGAAAACAAG
AATTTGATAGCCTGGACTCTAAAAACAATACATATCAGGCGATCGTCAGC
CGTAGACGTAGTCATGCCGCGACC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_006883XLOC_006883Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00012230-exon-sc0000141-1491911889:263283..263606TCONS_00012230-exon-sc0000141-1491911889:263283..263606Clytia hemisphaericaexon
TCONS_00012230-exon-sc0000141-1510915933:263283..263606TCONS_00012230-exon-sc0000141-1510915933:263283..263606Clytia hemisphaericaexon
TCONS_00012230-exon-sc0000141-1575043694:263283..263606TCONS_00012230-exon-sc0000141-1575043694:263283..263606Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000141supercontigsc0000141:263283..263606 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
8.32896	6.91878	12.574	12.3017	81.9525	54.5693	67.422	79.4565	21.056	24.1493	45.0046	19.9283	20.7212	21.7322	19.9688	20.3017	18.9891	28.2455	18.3636	14.7553	31.9134	34.042	22.6366	27.0112	30.4705	58.5267	22.4183	20.7655	23.6248	25.1165
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00012230 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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