TCONS_00012235 (transcript) - C. hemisphaerica

Overview
NameTCONS_00012235
Unique NameTCONS_00012235
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length667

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00012235 ID=TCONS_00012235|Name=TCONS_00012235|organism=Clytia hemisphaerica|type=transcript|length=667bp
GATTGGTGAATTGTGTTCAATTCATTTTCACGACCAACGAAGTTTGGGTT
TTCGATCGGAAGTTGATAAATGAAAGTTGGTGACAGAGGCTTGAGATCTT
GTGGAGGACATCCTAAAGCGATTAAAGGTTTACTCATCCGATTGTAGATT
CTCTTATATTCTGCTTTAGTAATCTTTCGGTTTGCTTTATGGTTAAGTTG
GTTACGTTCAATCTTTAGAATGATACAATATGCGATGTCTGAAGTATCGG
TAGGGTCCGGTTCCGCATCCCAACCTGTCCGTGGTTTTTTATATCCGCAT
AAAGTACGGATCATAAAGAACGtcaaagtgacgtcaaaaagtgAGGAGTC
AGTCCTCTGACATGCTGGATAAATCAAATCATATTGATCTTGTTTCAAAT
TCCGTTGATTAAGAAGTTGTTTCAATTTCCTTTTATGTAGTAACAAAGCA
TTGTATAAATCAACTGGATTGCGTGGAAAATGTTTGTGAAAAACATTGAG
GAGGTATTGCTGAGATTTTTCTTCGAGAATATCAACATTATGACGATTCT
TGTGTTCTTGTGTGAAATATTTGACTGGTGAAGTTTGTGTTCCCGATGCG
GCTGTTGccatttcgaaacttttgcttCTTCATGACATGACAAATTTTTC
TCTACCACTAACTTCGA
Run BLAST on NCBI

protein sequence of TCONS_00012235-protein

>TCONS_00012235-protein ID=TCONS_00012235-protein|Name=TCONS_00012235-protein|organism=Clytia hemisphaerica|type=polypeptide|length=203bp
MATAASGTQTSPVKYFTQEHKNRHNVDILEEKSQQYLLNVFHKHFPRNPV
DLYNALLLHKRKLKQLLNQRNLKQDQYDLIYPACQRTDSSLFDVTLTFFM
IRTLCGYKKPRTGWDAEPDPTDTSDIAYCIILKIERNQLNHKANRKITKA
EYKRIYNRMSKPLIALGCPPQDLKPLSPTFIYQLPIENPNFVGRENELNT
IHQ
Run BLAST on NCBI

transcript from alignment at sc0000141:384452..385118

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00012235 ID=TCONS_00012235|Name=TCONS_00012235|organism=Clytia hemisphaerica|type=transcript|length=667bp|location=Sequence derived from alignment at sc0000141:384452..385118 (Clytia hemisphaerica)
TCGAAGTTAGTGGTAGAGAAAAATTTGTCATGTCATGAAGaagcaaaagt
ttcgaaatggCAACAGCCGCATCGGGAACACAAACTTCACCAGTCAAATA
TTTCACACAAGAACACAAGAATCGTCATAATGTTGATATTCTCGAAGAAA
AATCTCAGCAATACCTCCTCAATGTTTTTCACAAACATTTTCCACGCAAT
CCAGTTGATTTATACAATGCTTTGTTACTACATAAAAGGAAATTGAAACA
ACTTCTTAATCAACGGAATTTGAAACAAGATCAATATGATTTGATTTATC
CAGCATGTCAGAGGACTGACTCCTcactttttgacgtcactttgaCGTTC
TTTATGATCCGTACTTTATGCGGATATAAAAAACCACGGACAGGTTGGGA
TGCGGAACCGGACCCTACCGATACTTCAGACATCGCATATTGTATCATTC
TAAAGATTGAACGTAACCAACTTAACCATAAAGCAAACCGAAAGATTACT
AAAGCAGAATATAAGAGAATCTACAATCGGATGAGTAAACCTTTAATCGC
TTTAGGATGTCCTCCACAAGATCTCAAGCCTCTGTCACCAACTTTCATTT
ATCAACTTCCGATCGAAAACCCAAACTTCGTTGGTCGTGAAAATGAATTG
AACACAATTCACCAATC

Coding sequence (CDS) from alignment at sc0000141:384452..385118

>TCONS_00012235 ID=TCONS_00012235|Name=TCONS_00012235|organism=Clytia hemisphaerica|type=CDS|length=609bp|location=Sequence derived from alignment at sc0000141:384452..385118 (Clytia hemisphaerica)
atggCAACAGCCGCATCGGGAACACAAACTTCACCAGTCAAATATTTCAC
ACAAGAACACAAGAATCGTCATAATGTTGATATTCTCGAAGAAAAATCTC
AGCAATACCTCCTCAATGTTTTTCACAAACATTTTCCACGCAATCCAGTT
GATTTATACAATGCTTTGTTACTACATAAAAGGAAATTGAAACAACTTCT
TAATCAACGGAATTTGAAACAAGATCAATATGATTTGATTTATCCAGCAT
GTCAGAGGACTGACTCCTcactttttgacgtcactttgaCGTTCTTTATG
ATCCGTACTTTATGCGGATATAAAAAACCACGGACAGGTTGGGATGCGGA
ACCGGACCCTACCGATACTTCAGACATCGCATATTGTATCATTCTAAAGA
TTGAACGTAACCAACTTAACCATAAAGCAAACCGAAAGATTACTAAAGCA
GAATATAAGAGAATCTACAATCGGATGAGTAAACCTTTAATCGCTTTAGG
ATGTCCTCCACAAGATCTCAAGCCTCTGTCACCAACTTTCATTTATCAAC
TTCCGATCGAAAACCCAAACTTCGTTGGTCGTGAAAATGAATTGAACACA
ATTCACCAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_006888XLOC_006888Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00012235-proteinTCONS_00012235-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00012235-exon-sc0000141-1491911889:384452..385118TCONS_00012235-exon-sc0000141-1491911889:384452..385118Clytia hemisphaericaexon
TCONS_00012235-exon-sc0000141-1510915933:384452..385118TCONS_00012235-exon-sc0000141-1510915933:384452..385118Clytia hemisphaericaexon
TCONS_00012235-exon-sc0000141-1575043694:384452..385118TCONS_00012235-exon-sc0000141-1575043694:384452..385118Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000141supercontigsc0000141:384452..385118 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.399355	0.075538	0.844018	0.795452	1.50495	0.616175	2.08579	3.59138	1.17084	2.67269	1.59533	1.37256	3.99158	3.96605	1.88086	3.07189	1.97935	2.802	3.10388	8.86895	7.77046	7.59527	1.72288	3.40558	4.72613	4.7988	15.3267	11.5518	3.19303	2.61241
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00012235 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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