|
|
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00012247 ID=TCONS_00012247|Name=TCONS_00012247|organism=Clytia hemisphaerica|type=transcript|length=228bp
atttgtagaccggggttttttataatgactatggtaaAAGaaaaagtCAA
CCAAAATGTATTTGTTacaatttctttttggattgatGGTTTTTATCCAG
TTGCCAACTTCAACATCCAGTACAGGCAACACAAAGACAGCCGAAGAGAT
GGATACAGCATTAGCCAAAGCTTTCAAGGAAATTATCGCCACAAGCAATG
AACCAGTTAAAGCTCAGAAGATTACTAA Run BLAST on NCBI transcript from alignment at sc0000143:44963..47282+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00012247 ID=TCONS_00012247|Name=TCONS_00012247|organism=Clytia hemisphaerica|type=transcript|length=2320bp|location=Sequence derived from alignment at sc0000143:44963..47282+ (Clytia hemisphaerica)
atttgtagaccggggttttttataatgactatggtaaAAGGTacttattt
atttttgtgtttaaGTCTGTTTAAGTTGGCTTCAAGCATTTTGTTAACTC
GTGAGAACATTTACAGTAGAAAGCGCACTTCAGTggtcttaaagggacat
aaaagtagtaaaatgtaaacattgcgcgaaccacgtgtcattaaagagaa
caattaaaatcacgtttccaaaacaaacttgtaaaacaaNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNtatttggtttgattttttatt
ttgacatgtgacatttgttttgattttgtatccgctgcatacagtttgtt
tacaaatttcgcaagtactgttatgtccctttaaacgcGTTTATTTGTCA
TTTAAGCGCACTTTGAGATGAATTTTGAACATGATTGGAAACTtggttgg
tttttttttttataaggaacacgtttataaggaactcgaggttgaaaatg
gttcaaaaaataaggaattgttaaggaactgctcaggctgagcataagtg
gatttgaaaataatgtaccttattgggactaatttgaccaaattttgatc
tttcaaggggcaaaaagttcaaaatttcctatgtagtaaggaactcgaNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNaaggaactcgataaggaactttgagactgaaattctctgtaa
aaataaggaactccaggctcagagcaaagttaaggttccttataaaaaaa
aaacgtgtaatttgatTGACTTTTTCTGATTCGTAACATAGTGATTAGAG
NCTGTATTATTTCCAAGGCAACACAAAGACAGCCGAAGAGATGGATACAG
CATTAGCCAAAGCTTTCAAGGAAATTATCGCCACAAGCAATGAACCAGTT
AAAGCTCAGAAGATTACTAAAGAGATCACTGAGAAATCGGGTGAAGTGAC
GACAGCACTACAAGTATGTCAAAGAGCTTTGTTTTAACTgaaatttttgg
caattttcacaCCAGcaaatttttggcaattttcagtTCTGAAAAATTCT
CGATGTGCCAAATTGTGCTACCTTCTTTAACAAGTGAGGTCCAAAAGCTG
ACTTTTATATAAGTGTTTTGTTAGCCAATTCAATTAACTTAGTTTGTTCT
AAATTTTGATGTCCTTACataattgttttgttagaaAAGTGTCTAAAAGT
TCTAGATTTCTATCCTATATCcacataaaacatcaattttatcTCCCTAT
CAAAATGTATCTCTTGAAGTTTGATTTCTTTTCNTTTCGCATTTTTGTCA
GGatttagtagtttttgctgccttttagGTGATTTTATTGGTGAAATTCT
acatttacttttattttttcgccgactgaccgaccctcttttttgggtag
cttggcccgtaaagcaacaaattaaattggcctcgccttacACTATAGAG
ATTGTTTAGTTTTCTTGACTTGTTCCTCTTTTACGTATTTTTCTATGTAC
GAAATTTTCGGCTACAcatttttttgtatgtttttttcttagaaaaagtC
AACCAAAATGTATTTGTTacaatttctttttggattgatGGTTTTTATCC
AGTTGCCAACTTCAACATCCAGTACAGGTACTTATGGACTTGATTTTTGC
CTCGGTCCTTTTTTATATATTCTTCTATTTTACCTTATACCTATTTTATT
TACCTCGTACCCTCGGGTAGACAGCTTAAAAAAGGGAGTCCTCGACAGCG
GTCGGCAAACTCAAttattagtagggggaaatttgttcgttttttttagg
tcgctcgatttttttagtcaaagtacttgttatacatttttagaaagcta
taaggggtaggggaatcaaaataacaatatcgattttacaaatttcaccC
TACCATATGAGTGTACAGTTAAAAACAAATAGACTTTATTTCGTTTTATT
TCTGTATTATTTCCAAGGCAACACAAAGACAGCCGAAGAGATGGATACAG
CATTAGCCAAAGCTTTCAAGGAAATTATCGCCACAAGCAATGAACCAGTT
AAAGCTCAGAAGATTACTAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00012247-exon-sc0000143-1491911889:44963..45002 | TCONS_00012247-exon-sc0000143-1491911889:44963..45002 | Clytia hemisphaerica | exon |
| TCONS_00012247-exon-sc0000143-1510915933:44963..45002 | TCONS_00012247-exon-sc0000143-1510915933:44963..45002 | Clytia hemisphaerica | exon |
| TCONS_00012247-exon-sc0000143-1575043694:44963..45002 | TCONS_00012247-exon-sc0000143-1575043694:44963..45002 | Clytia hemisphaerica | exon |
| TCONS_00012247-exon-sc0000143-1491911889:46755..46839 | TCONS_00012247-exon-sc0000143-1491911889:46755..46839 | Clytia hemisphaerica | exon |
| TCONS_00012247-exon-sc0000143-1510915933:46755..46839 | TCONS_00012247-exon-sc0000143-1510915933:46755..46839 | Clytia hemisphaerica | exon |
| TCONS_00012247-exon-sc0000143-1575043694:46755..46839 | TCONS_00012247-exon-sc0000143-1575043694:46755..46839 | Clytia hemisphaerica | exon |
| TCONS_00012247-exon-sc0000143-1491911889:47180..47282 | TCONS_00012247-exon-sc0000143-1491911889:47180..47282 | Clytia hemisphaerica | exon |
| TCONS_00012247-exon-sc0000143-1510915933:47180..47282 | TCONS_00012247-exon-sc0000143-1510915933:47180..47282 | Clytia hemisphaerica | exon |
| TCONS_00012247-exon-sc0000143-1575043694:47180..47282 | TCONS_00012247-exon-sc0000143-1575043694:47180..47282 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000143 | supercontig | sc0000143:44963..47282 + |
Blast
The following BLAST results are available for this feature:
|
