TCONS_00012251 (transcript) - C. hemisphaerica

Overview
NameTCONS_00012251
Unique NameTCONS_00012251
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length826

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00012251 ID=TCONS_00012251|Name=TCONS_00012251|organism=Clytia hemisphaerica|type=transcript|length=826bp
TTAATGTTCTCttggtttggtgtttttgtaaacattaaGGTCTTGTTCCA
CTTAGCTTTTTTGAGCCGCCGAACAATGCGCACGGCTTAATTATTGTATA
AATTAAGCTGTCAAAGCTGTTCGCTTTGAACGCAAtgagcttttttgaaa
gttgaaaattttcaactttgtgCGCAAAGCTGTATATACagctcttttat
ttttattttttggccaaCCGATCAgaatggataatttttttttgagtggc
gtttgcaaaaataataaacaaaagtATGAAATCAAAAAGTGCTACACCTG
TGACATTTCTTTTAAATGAGTGGAAGGATAAAAACGTCCAGCGTTCAAAG
CGCACGAGCCGTGCGCGATGTTCGGCGGCTCAAAAAAGCTGAGTGGAACA
CgacttttatgaaattcttCAAACAGCAAGCTTATTAAACAGAATTTTCT
GAAGTCTTCATCAAAGAAAATGCTGCATGCAATAACCACTGGATATTTAT
TACAAGGAAATTTACTTTCAGaagctaTAATCAAAATGGCAAGCAGCAAG
GAAAGATAACATAAAGGAGAGCTACCCAGGCAGATACCCGAGttaCGCAT
TGAACGTGTCTTGAAACGGCCGGATAAGAACTATCGTCACGCTGGACAAC
CATACGTTTACGAACAAAGAGAGACGGGCCACAACCAGCACCCTTGTttt
cgtgggtcaaaattcaGGGCTTATAGACGTCCTTATTTTACCCAGATACT
ATCTCACTTAAAAGAATTTTATATAGAATTTTCTTCAGTTTGCTATGGTT
TTCATCAAAGTATAGCTTGAAATGTC
Run BLAST on NCBI

transcript from alignment at sc0000143:99454..102294+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00012251 ID=TCONS_00012251|Name=TCONS_00012251|organism=Clytia hemisphaerica|type=transcript|length=2841bp|location=Sequence derived from alignment at sc0000143:99454..102294+ (Clytia hemisphaerica)
TTAATGTTCTCttggtttggtgtttttgtaaacattaaGGTCTTGTTCCA
CTTAGCTTTTTTGAGCCGCCGAACAATGCGCACGGCTTAATTATTGTATA
AATTAAGCTGTCAAAGCTGTTCGCTTTGAACGCAAtgagcttttttgaaa
gttgaaaattttcaactttgtgCGCAAAGCTGTATATACagctcttttat
ttttattttttggccaaCCGATCAgaatggataatttttttttgagtggc
gtttgcaaaaataataaacaaaagtATGAAATCAAAAAGTGCTACACCTG
TGACATTTCTTTTAAATGAGTGGAAGGATAAAAACGTCCAGCGTTCAAAG
CGCACGAGCCGTGCGCGATGTTCGGCGGCTCAAAAAAGCTGAGTGGAACA
CgacttttatgaaattcttCAAACAGCAAGCTTATTAAACAGAATTTTCT
GAAGTCTTGTAAGTAGCTGCTGCGTTAACGATTGATATTTTGTTCTATGA
ATATTTGcttcttgataaaaaaaatcatttaacttCAAGCAAGGAAAGTT
TATGAACAACTTTTCTAATATATATTTTGACAGTTAAACCAAAAATTTGG
TTTACTGTTACTGGCCCTATTTTGGTTCTTTATATTTTAAACATTGTAAC
ATGTGGCATATGTGTAGTCATCTAGCATGCCAAACACATATCAGCATTAG
CCATTCAATTTGAGTGTCAAAATGTGGATGGTACTTTGTTTAAAACTAAA
GGACAAGCTTAAATTGTAATAACCGAATTGATACAAAATCTTGATAGCAC
TTTTATATCAGGTGTGCATGCTGTTAGTCATTTTACATGCCAAAACAGCA
TCATCAGTCAAAACATTCTAAACCATGTTTAAACTGTACAAATCATGATT
AATTGGACTATCATTTTTTTGTATTGTTTTGTTATTACTTTCTATAGCTT
TCAAAAATACTACTAGCTTGTGTACTCAACAAAATAGTTTACAAATTAAT
AAGATAAAAAATATGTATTGTTtgagaaaagttaacttttcaaaacaaaa
aatagtcGAATCCAGCTATcttaaagtttaaatttttttgttggtCTTAG
CTATTCTGTTTTAGACAGCTTTTGAAGTATGATCTCTCTCACAATGAAGT
GGTGAGGCAAGTTTTATTGTCGTACTCATTTTCAAGTTTCGTAATAATAT
GGGTTACTTATAATAGTCGAAGTGTTTTTCCATCAACCTTAATCATGCAA
CATTCCTTGTGGTACATATTACTTCATATTAAACATTGTCTTTGAAGAGT
GAGATGTAAAAAGTCAAAGTTTATTATTCATCAATGAGATCTCTTCATGT
ATGTCTATCTTTCTTCAGTGCAATGACTTTTtacaatgaaattttcaaac
ctgtcttgaattttttttgtcaagcCCGATATTAGAGATGGTAaattcct
tttcttctttttcttctagCATCAAAGAAAATGCTGCATGCAATAACCAC
TGGATATTTATTACAAGGAAATTTACTTTCAGGTAAGTTATTCCTCTCAG
GTTTTCCCTTTAAGAGAGATGATGTTTTGCTTTATACCCTAACCGTAGAT
CCTCCGCCTATATGGAGATgtctttttctctagaaattctcaatttttgt
aGACCGTCACAGTGCTACGGTGGCCTCAAAAGCTCACAGCATACTTGCAG
TTCTGGCACACTTccagttcacaaattttataagaactagaaCTGTCCTG
GGGTCAATGATGCAGAAGCATAAGACCCAGAAGGTTCAAATTACACACTG
CGCTACGTTTTATGGTGAATCTTACATGTTGTGcgttaaattttgtttca
gtttaatttgtttttcattttcagaagctaTAATCAAAATGGCAAGCAGC
AAGGAAAGATAACATAAAGGAGAGCTACCCAGGCAGATACCCGAGGTAAG
GAGTTCAAATTATTGTTTATGTACGAGTATTTTCAAGATAGCAGGAGTAA
CACATAGCATGCACCCCCTGAGCTTAAGGGAGGGGCTAATCCATTGTTGC
TTGATTTGGGCtgtactttttaaaaaataattagaatgttttaacccctc
ttataaaaataatttttttacctgCGGCGCAATAAATTTATTCAGAATTT
GCATGCTAAATTTGTTTTGTGAAGGTGGGGgctaagttttaaaaatttat
ctTGGGGTTATTTTCCTTACCTCCtcccctgaaaaatgctgagCGTTGAC
CCTTCTGCACACTATGTAACATTGGCTGACCCCGTGGAACTAAGTATTGT
AAAGATAAGAGTATATGATTCGTTGAGATTGCTCCCCTCTGAAatgtata
aaattttaaaatggaaATTTCTCTGGGACAAACTGTATAAATTTTAAATA
CACTTTATTTATCACTTTTCATACTTTTGATATCACAGGCATAGTTTTCG
ATGGCTTCATTATTGTCATTTGTACTACTTGGTTGAATATTGCCTGAAAG
AAACTTCTAAATTTCTACTAACCTTTTTAAGCTTAACCAGTAAAACAATC
CATACTGGTTAAAgccaaattcaattttaaattctgaacctgcttttcat
tttttagttaCGCATTGAACGTGTCTTGAAACGGCCGGATAAGAACTATC
GTCACGCTGGACAACCATACGTTTACGAACAAAGAGAGACGGGCCACAAC
CAGCACCCTTGTtttcgtgggtcaaaattcaGGGCTTATAGACGTCCTTA
TTTTACCCAGATACTATCTCACTTAAAAGAATTTTATATAGAATTTTCTT
CAGTTTGCTATGGTTTTCATCAAAGTATAGCTTGAAATGTC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_006901XLOC_006901Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00012251-exon-sc0000143-1491911889:99454..99911TCONS_00012251-exon-sc0000143-1491911889:99454..99911Clytia hemisphaericaexon
TCONS_00012251-exon-sc0000143-1510915933:99454..99911TCONS_00012251-exon-sc0000143-1510915933:99454..99911Clytia hemisphaericaexon
TCONS_00012251-exon-sc0000143-1575043694:99454..99911TCONS_00012251-exon-sc0000143-1575043694:99454..99911Clytia hemisphaericaexon
TCONS_00012251-exon-sc0000143-1491911889:100923..100985TCONS_00012251-exon-sc0000143-1491911889:100923..100985Clytia hemisphaericaexon
TCONS_00012251-exon-sc0000143-1510915933:100923..100985TCONS_00012251-exon-sc0000143-1510915933:100923..100985Clytia hemisphaericaexon
TCONS_00012251-exon-sc0000143-1575043694:100923..100985TCONS_00012251-exon-sc0000143-1575043694:100923..100985Clytia hemisphaericaexon
TCONS_00012251-exon-sc0000143-1491911889:101328..101398TCONS_00012251-exon-sc0000143-1491911889:101328..101398Clytia hemisphaericaexon
TCONS_00012251-exon-sc0000143-1510915933:101328..101398TCONS_00012251-exon-sc0000143-1510915933:101328..101398Clytia hemisphaericaexon
TCONS_00012251-exon-sc0000143-1575043694:101328..101398TCONS_00012251-exon-sc0000143-1575043694:101328..101398Clytia hemisphaericaexon
TCONS_00012251-exon-sc0000143-1491911889:102061..102294TCONS_00012251-exon-sc0000143-1491911889:102061..102294Clytia hemisphaericaexon
TCONS_00012251-exon-sc0000143-1510915933:102061..102294TCONS_00012251-exon-sc0000143-1510915933:102061..102294Clytia hemisphaericaexon
TCONS_00012251-exon-sc0000143-1575043694:102061..102294TCONS_00012251-exon-sc0000143-1575043694:102061..102294Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000143supercontigsc0000143:99454..102294 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.834862	0.732613	0	0.205816	6.46593	6.38119	2.24413	3.39181	3.55469	2.36759	4.67891	5.32166	8.23695	5.22926	15.3412	15.7326	14.1852	17.1964	7.61486	8.65576	7.5524	8.37767	9.06363	6.19774	2.02171	3.6904	5.42018	8.93294	21.1847	22.9304
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00012251 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
back to top