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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00012268 ID=TCONS_00012268|Name=TCONS_00012268|organism=Clytia hemisphaerica|type=transcript|length=355bp
ttttgGCACCCCAAAAGCTTTCTTGAACACTTGCGCAGAAAGCGCTACTG
TCATTTTTTTTCGCAACCGAATTCAGGTCAGAAAGAAGCAAAGTTGTTGA
GGaaacttgaattaattttgaCACAAAATGGCTTCAAAATGTACTCAACT
TCTTCGACAGACATTGGGAAAGCAAGGAAATAATCCAGTACGATTACTTG
CTGGCGgttttcaaagaaattacaGTGATTCTGGTGTAAGTATATCGCTC
TATTCTNGGCGCTCAATGTCTTACAattagggtagatcgtcaactaccat
ttttagcatgatgtcaaaaaattcaaagtgtaatatttttttgtgaaaat
ttaat Run BLAST on NCBI transcript from alignment at sc0000143:336190..341572+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00012268 ID=TCONS_00012268|Name=TCONS_00012268|organism=Clytia hemisphaerica|type=transcript|length=5383bp|location=Sequence derived from alignment at sc0000143:336190..341572+ (Clytia hemisphaerica)
ttttgGCACCCCAAAAGCTTTCTTGAACACTTGCGCAGAAAGCGCTACTG
TCATTTTTTTTCGCAACCGAATTCAGGTCAGAAAGAAGCAAAGTTGTTGA
GGaaacttgaattaattttgaCACAAAATGGCTTCAAAATGTACTCAACT
TCTTCGACAGACATTGGGAAAGCAAGGAAATGTAAGTTGAtcgtattttt
tatttgaattgtgTTCTTTAAAGGCTTGTAAACTTAGACCGTAGGTGACA
GATGGAAGGCTATGAAACACTACTATCACTGcaataaaatgaattttaga
TTAGAAACTTTGCAGTTTAGAGTAACAAACAGCTACAGTActccaaattt
tagttgactgGCAGGTTCTTGTTTCAGGAGAGGTGCCtatcatgattttt
tgctaaaaagcctGGACTGGACGATCCAGATGAATAGCAAATAGCAAAGT
TTTAGGGGTCACGATTATCGTTCAACCTTTAGTAGTTTTTTAGATTACAT
TTTGGAGCTCTATTTTTTTAAGATTCTGTACAAAAGCCTCGCGCCATCTT
GTAACATCTCCATGACGGCACTATTAAAATCAATAgtgtttcacaaaaaa
aatatgCGTGGGAAGCTTGGGGCAAGAAGAGTATTTTTCTGTATGGCGAG
CCGTAGGCAGGGGTCATTAACTTTTTTATTAGCTTATACCATTCAGTTTA
GATGGAACTTTGATATTccaggattacgattttaccagctttttagctat
ttttcctcgctaacagttagtcacactagcttcccgccaaaatgtgtatc
aaagattaatgctgcgagtgcgctatatcgtttacttgactctcaagcaa
aaaaatgcgccccaaaacttctaaagggattcatgaaaaaataacccggc
gctttttaatgaaattaacattttcaaaaacttcgagaaattgcctaaaa
tttgagccatagatgaaaaaatttgagccaagccaaccttgaaaactaat
ttgaagatcaacttcccaagaaaaagatctacgggggagggggaacccac
ctagatccgtgcACCGCCGGATTGgctatttcccagaaattttgtcggac
ctcaaacaatgacccataatttacatgtgcggaattgtttttactttagc
gtataaactaggccttaaaaataaaagcgctgtctcgggaattgaatgac
aaattttggttggttgattttggctgctgcacgttttattttgtttcaaa
ctttcaagttttaattaattgtcttgCGAACTTGATTCAGGCAACTCTCA
TCCTTGTTGTtgcaaatacatcctgtagtgtgactaactgtcagtgatgc
tggaacttcgatttttgaggattacaattttaccagcttttcagCGAATT
TTGCcccgctaacccaaatctcgcaacctctttaccttaaggaaagatcg
aaattagagtttttcagcgctccgaaaaaaacgcatagcagaaatttttt
catcttcacaggatcgattgtcaacaacaaaatacatctgtTGGTCTttg
gtttgtttctgacgtttttccttcaaataatatcgatcactttccttttc
cccttgagagCGCGAGAAAAAATTGATTACCTCGTgttctcgcgcgggcg
aataaagatgaggcggtaatcttgcactgagggtgctacttagtttccgc
cctattttgcacccacgatagaatggtacaaatacgggggtatgccaaat
gataaactatgtcgttctgtacttgtgtttattttctgagagatacaaag
aGTGTATTGAATATTGTTAACtcatttatttaagtattttagagcgcaaa
tttaaatatatggttaaataaaaaacaaatgatagcagttctgttttttt
cctcaaacccccgggaaaagtttttttgacgacttagctattttacaaat
ctcggaaaagaactcccataggaattccgatgcataacctgattggttaa
tttcggaacggcttcaagaaagtcataatggtaggtaattttaaaagttt
ctgaggaaatgtgtgtaatttatcgaagTTGATGGCtcgttgattcttta
aagaaaaaagataacaggtatagctttttctaatcctggaatatcgaggt
tccagctacattGCTattctgacaaaacatgggacggcaattcggctaCT
ATCtactatttcaccaaacctccaaagtcatttgatttgagttaatgaac
ggggtattaaaaaatacatgatttcttTTTCGCAACGAGTaagcttttaa
attgaaatatgaaaaaaatccatagtggaacacaaacgaagaagaccaaa
ttagtggcaataCGATGGAgtgtttgacgtcacttgcgcggcaagttaca
cactcgttatttgttaatcccatcgtgCAATAGGcagttactcttaggtt
ccaaataaacggcccccgtttgggcgttctctaattctccaaacGGCAtt
cggtcattttgaatgaaacaaaaaagttaaaaagtgcgcgctatcagtga
aagttatcgtggcATGTCATGACAGAAAGTAtggttgataaacttggtgg
agttatcataacaaatttgttgtcaaagagatttaacagtaagtgaaaat
atacAGGCCATATACCAATCCtcctaagttagagcagttgacagtacaaT
TTTATCATTTCTTTGCTATTGATTATTAAATTACTTATACTTGTACCGGG
TGACCCCAAAAGTTCAGACATTTCTCGACGTCTTGATGCCGAACAAATGT
ttcaaagtgcttggagtttagatatttagaaagtaaatatcctaacttaa
aatttgagctatcactttttaaatttgaccgatttgttctctacttatga
gcttttaaagtcaaaaaacacgtaaaaatctacaaaagcgccaattttta
taaaaactagtcttgttttaagcaaaaattacttttaaaggtgtttttat
taattattaatgtcataaaactcgttaaataggtcaatttgtaagtgatt
ttctaattgattgcataaatttgatacctcttttttacgtgttttttaca
ctttcctaaaagtgaattttgactttaaaagctcataagtagagaacaag
ttggtcaaatttaaaaagtgatagctcaaattttaagttaggatatctac
tttctaaatatcaaaactccaagcactttgggacatttgtttggcctcaa
gatgtcgggaaacgtctgaactttttcgtgggtcacccggtataagactg
gaaagagaatttaatttttgaaaggtcgtgagaaaatgaaattttacatC
ATACATGACtgaattttattgataaaaGTGTAACACAAATTGGAATGTCC
CAAAACAGCCAAATTCTGCCTCATGTTTTTAAACATGTTTCCGCCATCTT
TCAACATCTGCATGGCACTGAAATGGAAAGTGTTTTACAAAAGAATCTGC
GCAGGAAGTATGGGCCGAGAGTGTtttcatagtgtgcagaggggtccagc
ccccagcatttttcaggggggggggttaaggaaaatagcccccggctaaa
ttctagaaacatagcccccaccttcaaaaagcaaaatatcaaagaaattt
tgcatgcaaattcttgataaatttatttttaaatcttccggcagggaaaa
ttttttttcaagagggaTAACCCCCCCTAGCAAGCTGACCcccattattt
tttgaaaaatacaaaccTTATTCTTGTTAAAATATTAacattggtttaaa
aaaagtgtaaatttaaagtaaaaaattgcattttaagtGCATATTTCAAC
TTCCTGAAAAAAGTAGGATGCTCTAGTCAACAAACGTGGTATGTTTTGAA
AGCTTAACTATTACaatggaaaatgcaaaaaaagtcaGGCTAATAGCTGT
CTCCGGTGGCTAGGGCTTTTGATTTTAATAACCcccggtaaaataaaaat
aaaatttcagtgCCGTGAACAAGAAgtcaagaagtttgaaaaaagcgCAC
CTTTGAGtgctcattttcaaattttgaaagaatgaaaagacatataattt
tttttgcaaaagaaagctAAATAAATTCTCTTGAAGTTAGAAAAAACATT
TGTtctaaaaacttttctttcctGGAGTTATGcaagtttgaagatttttt
ttcaaaaatcctgtTTTTGTTACTGCCGCAGGCGCGAGTTTAGACCTccc
taccttaaaggaagatcaGAGTTAGAGTTTTTCAGGGTTCCTAAAAAAAC
GCATTGCCAAAATCTTTTCATCTttacaggatcgattctcaaccacaaaa
tacatcttttggtcaatGGGTTTTTTTCTGATGTTCTTCCTTCGAAGAAG
ATAtattactttcgttttcccttTGAACAcctgagaaaaaaatgattagc
tcgagTTCTCATAATGGAATATCTAAAAAACTACTCAAGGTTTAAAGATT
TAAGTGAACCCTAAATTTTTCTGATGATAAGGGTTTTTCATTCAACTTGG
TTTGACATTTTgcaatgagtttgaaattttgactgacCCTCCTAATTCCg
ttttgaagttcaatttttatgttttcatgaCAGCTTACTTTCAATGTAAA
AGTTTTGAAGATTCCATGTTTAAAGCTATTATTAAGGAGCTAGCTAGCAT
TAGTTTCGAACCCCATGCCTCTATTACATAATAGTTTAAGAACGGCTAAG
AAATGCTCAAACTTCGAATTTCTAGTCTGATTTCTGTTTAAGATCAACCT
TAAACCACTAAGAGAAATGTGATCTGTATTAATTGANCTAactcaaaaag
acaaaataaccccagcgagatcgctcaatgtttcaattttaggctaaaaa
ggctgattttctccgattctgggtagcaaaatgcatgaaagcggcatttt
tgaggacccacaacttttaaactttttaaggtacacacttgaaattttca
gcaatgaaacacttcagagaaagctccaggaaaaaNGCTCATTTTCATTT
GATTAAATTATTTCATTTCATAAAAAGGGTCTCTTGCACATTTGCACATC
TCTTATATTTAATTACTTTGGCTGACGTTTTCTGCTCTACCCTAACTTTT
TTATGTAATATTTAGTTGGattgtattttttgaatgtcctctcatttttt
tctccttagAATCCAGTACGATTACTTGCTGGCGgttttcaaagaaatta
caGTGATTCTGGTGTAAGTATATCGCTCTATTCTNGGCGCTCAATGTCTT
ACAattagggtagatcgtcaactaccatttttagcatgatgtcaaaaaat
tcaaagtgtaatatttttttgtgaaaatttaat
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00012268-exon-sc0000143-1491911889:336190..336370 | TCONS_00012268-exon-sc0000143-1491911889:336190..336370 | Clytia hemisphaerica | exon |
| TCONS_00012268-exon-sc0000143-1510915933:336190..336370 | TCONS_00012268-exon-sc0000143-1510915933:336190..336370 | Clytia hemisphaerica | exon |
| TCONS_00012268-exon-sc0000143-1575043694:336190..336370 | TCONS_00012268-exon-sc0000143-1575043694:336190..336370 | Clytia hemisphaerica | exon |
| TCONS_00012268-exon-sc0000143-1491911889:341399..341572 | TCONS_00012268-exon-sc0000143-1491911889:341399..341572 | Clytia hemisphaerica | exon |
| TCONS_00012268-exon-sc0000143-1510915933:341399..341572 | TCONS_00012268-exon-sc0000143-1510915933:341399..341572 | Clytia hemisphaerica | exon |
| TCONS_00012268-exon-sc0000143-1575043694:341399..341572 | TCONS_00012268-exon-sc0000143-1575043694:341399..341572 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000143 | supercontig | sc0000143:336190..341572 + |
Blast
The following BLAST results are available for this feature:
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