TCONS_00012283 (transcript) - C. hemisphaerica

Overview
NameTCONS_00012283
Unique NameTCONS_00012283
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length604

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00012283 ID=TCONS_00012283|Name=TCONS_00012283|organism=Clytia hemisphaerica|type=transcript|length=604bp
attttgaaattggtaaTCAAACTTTTCTTTCCTCTATTTTGTAGACATTT
GCGGAGTGGGGTATTGACATGTTGAAAGTAGATGGGTGTTATTCGTGTAA
TAACCTTTTCCATGACGGATATGAAACGTTCGGTTTCTGGTTGAATCAAA
CACAACGTCCCATCCTGTATTCTTGCAGTTGGCCTGCGTACATCCCTAAA
GACAAACCCTACAAAGAGATTGCCAAATATTGTAATATCTGGCGAAACTA
TGGAGATATTCAGGTTTGATCATCATGTGACTTACTTAACTTTATATTAG
AGTTAAGTCGGGTAgcgtagctcagtcggtagaacTTTCGCACTACAATC
CAAGGgcgtgggttcgatccccggccACTGCCAACTCGGCGAACGAGAAG
CTTAGATTGGtgatctgatctaggcggtaaattactgggagctgagagta
ggtctGATCATTCGACCTCCCAGGCCTAGcccaaatagaaaaggggatag
actccctcactcccggctcaaACGAAAGCCACCAGACGAATACTTACTTA
TGTAGAGTGTACAAAGCAGAAGAGACATTGACAACAGACTTTCTAATATT
CTGC
Run BLAST on NCBI

transcript from alignment at sc0000143:426073..426676+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00012283 ID=TCONS_00012283|Name=TCONS_00012283|organism=Clytia hemisphaerica|type=transcript|length=604bp|location=Sequence derived from alignment at sc0000143:426073..426676+ (Clytia hemisphaerica)
attttgaaattggtaaTCAAACTTTTCTTTCCTCTATTTTGTAGACATTT
GCGGAGTGGGGTATTGACATGTTGAAAGTAGATGGGTGTTATTCGTGTAA
TAACCTTTTCCATGACGGATATGAAACGTTCGGTTTCTGGTTGAATCAAA
CACAACGTCCCATCCTGTATTCTTGCAGTTGGCCTGCGTACATCCCTAAA
GACAAACCCTACAAAGAGATTGCCAAATATTGTAATATCTGGCGAAACTA
TGGAGATATTCAGGTTTGATCATCATGTGACTTACTTAACTTTATATTAG
AGTTAAGTCGGGTAgcgtagctcagtcggtagaacTTTCGCACTACAATC
CAAGGgcgtgggttcgatccccggccACTGCCAACTCGGCGAACGAGAAG
CTTAGATTGGtgatctgatctaggcggtaaattactgggagctgagagta
ggtctGATCATTCGACCTCCCAGGCCTAGcccaaatagaaaaggggatag
actccctcactcccggctcaaACGAAAGCCACCAGACGAATACTTACTTA
TGTAGAGTGTACAAAGCAGAAGAGACATTGACAACAGACTTTCTAATATT
CTGC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_006912XLOC_006912Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00012283-exon-sc0000143-1491911889:426073..426676TCONS_00012283-exon-sc0000143-1491911889:426073..426676Clytia hemisphaericaexon
TCONS_00012283-exon-sc0000143-1510915933:426073..426676TCONS_00012283-exon-sc0000143-1510915933:426073..426676Clytia hemisphaericaexon
TCONS_00012283-exon-sc0000143-1575043694:426073..426676TCONS_00012283-exon-sc0000143-1575043694:426073..426676Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000143supercontigsc0000143:426073..426676 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
13.7106	15.0387	16.4381	14.7882	0	0.35	0	0	7.27443	7.12824	5.85544	5.02994	4.49898	4.58797	7.8982	6.86558	5.93045	5.12505	7.51111	7.43681	4.05165	4.64659	6.96426	5.77833	0	0.619508	3.50663	3.06229	12.8566	8.22815
Blast
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BLAST of TCONS_00012283 vs. Swiss-Prot (Human)
Match: NAGAB (Alpha-N-acetylgalactosaminidase OS=Homo sapiens GN=NAGA PE=1 SV=2)

HSP 1 Score: 83.1889 bits (204), Expect = 1.255e-18
Identity = 40/76 (52.63%), Postives = 47/76 (61.84%), Query Frame = 3 
Query:   45 TFAEWGIDMLKVDGCYSCNNLFHDGYETFGFWLNQTQRPILYSCSWPAY---IPKDKPYKEIAKYCNIWRNYGDIQ 263
            TFAEW +DMLK+DGC+S       GY      LN T RPI +SCSWPAY   +P    Y  +A  CN+WRNY DIQ
Sbjct:  144 TFAEWKVDMLKLDGCFSTPEERAQGYPKMAAALNATGRPIAFSCSWPAYEGGLPPRVNYSLLADICNLWRNYDDIQ 219
The following BLAST results are available for this feature:
BLAST of TCONS_00012283 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
NAGAB1.255e-1852.63Alpha-N-acetylgalactosaminidase OS=Homo sapiens GN... [more]
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