TCONS_00012297 (transcript) - C. hemisphaerica

Overview
NameTCONS_00012297
Unique NameTCONS_00012297
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length687

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00012297 ID=TCONS_00012297|Name=TCONS_00012297|organism=Clytia hemisphaerica|type=transcript|length=687bp
CATTATATTAAGCAGAAGTTAGATTTATACGCAGTAAATATACTATTGTT
CAGAGCATTTTGACAATAGTTATTTTGCGTGTGGATTACGAATTCTTTAA
GAAAAAAGCGAAATCGTGGCAACGGAAGAAAATTCTAAAGCATTGAAATT
GAAAGCGAAATAGAGAAATTTTTCAAGATATTGACTCTCTGAGACAAATA
CCAAGTTATTTAAGAAAAACTGAGGCAAAATATTCCTGAACATATCAGCT
GTTTTTGGAGATCAAGCTAGAAGAATTAAGTAATTTTCCAAAATGGCTTT
TTTTCATTTACTGGTGATCTTTTATTTGGCTTCAGCAAGCTATGTAACAG
CTACAGACAGCGATACAGCTAGTGATAAAATCAATGCAGCAAACTCGGAT
ATTGTGGTTGGAAATAATCAGATTCTAGATGGTGACGAATTGATTGAAGA
TTTAAAGGACGTTCAAAACGGATTGGTCAAGGGTGTTCAGAAATTATGGC
CTAATGGAATAGTTTATTACTACATTTCCAGCGAGTATAATGCTGAAGAT
AGGGCaatgattaaaaaatatggACCAGAAACCATCAGTGAAAAAGTACC
ATGCTTAAGGTTTATTGAATTGAACAAGAGACCGGCAGCTGGATCTGATG
GACCACATTATATTTACATCCAACCTCTAACAGGGTa
Run BLAST on NCBI

protein sequence of TCONS_00012297-protein

>TCONS_00012297-protein ID=TCONS_00012297-protein|Name=TCONS_00012297-protein|organism=Clytia hemisphaerica|type=polypeptide|length=131bp
MAFFHLLVIFYLASASYVTATDSDTASDKINAANSDIVVGNNQILDGDEL
IEDLKDVQNGLVKGVQKLWPNGIVYYYISSEYNAEDRAMIKKYGPETISE
KVPCLRFIELNKRPAAGSDGPHYIYIQPLTG
Run BLAST on NCBI

transcript from alignment at sc0000143:478461..480594+

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00012297 ID=TCONS_00012297|Name=TCONS_00012297|organism=Clytia hemisphaerica|type=transcript|length=2134bp|location=Sequence derived from alignment at sc0000143:478461..480594+ (Clytia hemisphaerica)
CATTATATTAAGCAGAAGTTAGATTTATACGCAGTAAATATACTATTGTT
CAGAGCATTTTGACAATAGTTATTTTGCGTGTGGATTACGAATTCTTTAA
GAAAAAAGCGAAATCGTGGCAACGGAAGAAAATTCTAAAGCATTGAAATT
GAAAGCGAAATAGAGAAATTTTTCAAGATATTGACTCTCTGAGACAAATA
CCAAGTTATTTAAGAAAAACTGAGGCAAAATATTCCTGAACATATCAGCT
GTTTTTGGAGATCAAGCTAGAAGAATTAAGTAATTTTCCAAAATGGCTTT
TTTTCATTTACTGGTGATCTTTTATTTGGCTTCAGGTAAGAAATAGatga
ttttatatattttatgtttgttgtTGAGATTTTTTCGAAGTAATTTTACA
CTAGACAATGAATCGTTCAGCGTGAAACTGACAGTAgtgtatatttttat
tttgacaaataaaatTACGAAATTGATCCAGCTCTTCTACATTTCTTTGG
TATCGAGCACTCTTTACATTGTTAGAATNAAATAAAATTACGAAATAGAT
CCAGCTCTTCTACATTTCTTTGGTATCGAGCACTCTTTACATTGTTAGAA
TGAgccaaaaaccgcaaaaaccaataagtgctgacgtcagcaaaacttgt
ttttttaaataactccagtttaaTGATATGTAACTTTAgtccaaatttaa
tttttctaccactagccaaactggagtcatttaaaaaaacaagttttgtt
ttagctttttgtttttttgcggtttttcgcaaaaatgaGGGCGTAAACAg
taggtaacacccctacaggaaaacttcatcatggtaccCTTTGTATTAAA
TCACTGGTTTTCTCATTTTCCGCCGGCTAATGCTTTCCAAAAATCAtggt
aattttcatgtttttgagacatgccatatcTTACCTGAGTGTGCAAATTC
AGGACAATTTTTaatacactttttcgaccgtagccgctaattgccgagtg
ggcattttttgtccgctttatcccactaacaTCGTCCCAggccttttttc
gcacctatagacaatagaaaaatgtgtcaataaaggattggatcgagttt
agggggatagtTAAAtgattaagtggcacgcgcctgaccgcgcgactacg
gtcgaaaaggtgtatccaTGGCCATTTTTTAATTCATTGCGGTCTTTTGA
TATGAAGTTAATTATGACTGTTGATACCTTTTTTTTAGCAAGCTATGTAA
CAGCTACAGACAGCGATACAGCTAGTGATAAAATCAATGCAGCAAACTCG
GATATTGTGGTTGGAAATAATCAGATTCTAGATGGTGACGAATTGATTGA
AGATTTAAAGGACGTTCAAAACGGATTGGTCAAGGGTGTTCAGAAATTAT
GGCCTAATGGAATAGTTTATTACTACATTTCCAGCGAGTATAGTAAGTTT
CTTGCAATACCGTAATAAACCCTTCTGTAAATGCTTTAAATCACTACATT
tccacacccctgtgtcaaagatccgctgggaccccagccccaacTGGAAA
ATTCGGACAAACTCTCGTCCCCGGTGTTAAGAGCATCCTacaatttcatc
cccactggagAATTGACTTTGATTCCATCCCCCATTCAGAattaaatgta
aaaaattgcactccaaatcCATCCCCACCTGATTTTCCgactgtgggaaa
aagtttcacccgggctgcgagacaggggtgtattttcaTAGGATTGCTGC
CAAGATAGTTTAACGCCATTAGACATAAGTAGTATAATCGTGCGTTCGCG
CGAGTTTGtataaaaattgaccaaaatatgcCTGGAAGGAGATTGTCTAA
TTGTTATTAATGGTAATAGTTTCTTtataaataacatcaaaaatACTCGT
GCTTACTTTCGATTGCAATTATCTTTACCAGTATAATCGTCAATTTATTT
AAAACAattatatgaaaatattttttaacttaATAGATGCTGAAGATAGG
GCaatgattaaaaaatatggACCAGAAACCATCAGTGAAAAAGTACCATG
CTTAAGGTTTATTGAATTGAACAAGAGACCGGCAGCTGGATCTGATGGAC
CACATTATATTTACATCCAACCTCTAACAGGGTa

Coding sequence (CDS) from alignment at sc0000143:478461..480594+

>TCONS_00012297 ID=TCONS_00012297|Name=TCONS_00012297|organism=Clytia hemisphaerica|type=CDS|length=1179bp|location=Sequence derived from alignment at sc0000143:478461..480594+ (Clytia hemisphaerica)
ATGGCTTTTTTTCATTTACTGGTGATCTTTTATTTGGCTTCAGCAAGCTA
TGTAACAGCTACAGACAGCGATACAGCTAGTGATAAAATCAATGCAGCAA
ACTCGGATATTGTGGTTGGAAATAATCAGATTCTAGATGGTGACGAATTG
ATTGAAGATTTAAAGGACGTTCAAAACGGATTGGTCAAGGGTGTTCAGAA
ATTATGGCCTAATGGAATAGTTTATTACTACATTTCCAGCGAGTATAATG
CTGAAGATAGGGCaatgattaaaaaatatggACCAGAAACCATCAGTGAA
AAAGTACCATGCTTAAGGTTTATTGAATTGAACAAGAGACCGGCAGCTGG
ATCTGATGGACCACATTATATTTACATCCAACCTCTAACAGGGATGGCTT
TTTTTCATTTACTGGTGATCTTTTATTTGGCTTCAGCAAGCTATGTAACA
GCTACAGACAGCGATACAGCTAGTGATAAAATCAATGCAGCAAACTCGGA
TATTGTGGTTGGAAATAATCAGATTCTAGATGGTGACGAATTGATTGAAG
ATTTAAAGGACGTTCAAAACGGATTGGTCAAGGGTGTTCAGAAATTATGG
CCTAATGGAATAGTTTATTACTACATTTCCAGCGAGTATAATGCTGAAGA
TAGGGCaatgattaaaaaatatggACCAGAAACCATCAGTGAAAAAGTAC
CATGCTTAAGGTTTATTGAATTGAACAAGAGACCGGCAGCTGGATCTGAT
GGACCACATTATATTTACATCCAACCTCTAACAGGGATGGCTTTTTTTCA
TTTACTGGTGATCTTTTATTTGGCTTCAGCAAGCTATGTAACAGCTACAG
ACAGCGATACAGCTAGTGATAAAATCAATGCAGCAAACTCGGATATTGTG
GTTGGAAATAATCAGATTCTAGATGGTGACGAATTGATTGAAGATTTAAA
GGACGTTCAAAACGGATTGGTCAAGGGTGTTCAGAAATTATGGCCTAATG
GAATAGTTTATTACTACATTTCCAGCGAGTATAATGCTGAAGATAGGGCa
atgattaaaaaatatggACCAGAAACCATCAGTGAAAAAGTACCATGCTT
AAGGTTTATTGAATTGAACAAGAGACCGGCAGCTGGATCTGATGGACCAC
ATTATATTTACATCCAACCTCTAACAGGG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_006916XLOC_006916Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00012297-proteinTCONS_00012297-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00012297-exon-sc0000143-1491911889:478461..478795TCONS_00012297-exon-sc0000143-1491911889:478461..478795Clytia hemisphaericaexon
TCONS_00012297-exon-sc0000143-1510915933:478461..478795TCONS_00012297-exon-sc0000143-1510915933:478461..478795Clytia hemisphaericaexon
TCONS_00012297-exon-sc0000143-1575043694:478461..478795TCONS_00012297-exon-sc0000143-1575043694:478461..478795Clytia hemisphaericaexon
TCONS_00012297-exon-sc0000143-1491911889:479699..479902TCONS_00012297-exon-sc0000143-1491911889:479699..479902Clytia hemisphaericaexon
TCONS_00012297-exon-sc0000143-1510915933:479699..479902TCONS_00012297-exon-sc0000143-1510915933:479699..479902Clytia hemisphaericaexon
TCONS_00012297-exon-sc0000143-1575043694:479699..479902TCONS_00012297-exon-sc0000143-1575043694:479699..479902Clytia hemisphaericaexon
TCONS_00012297-exon-sc0000143-1491911889:480447..480594TCONS_00012297-exon-sc0000143-1491911889:480447..480594Clytia hemisphaericaexon
TCONS_00012297-exon-sc0000143-1510915933:480447..480594TCONS_00012297-exon-sc0000143-1510915933:480447..480594Clytia hemisphaericaexon
TCONS_00012297-exon-sc0000143-1575043694:480447..480594TCONS_00012297-exon-sc0000143-1575043694:480447..480594Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000143supercontigsc0000143:478461..480594 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.222664	0.28951	0.0840371	0	0.200183	0.316374	0.0954231	0	0	0	0	0	0.197449	0	32.2411	5.47263	0	0	0	0	0	0	0	0	0	0	0	0	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00012297 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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