TCONS_00012313 (transcript) - C. hemisphaerica

Overview
NameTCONS_00012313
Unique NameTCONS_00012313
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length421

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00012313 ID=TCONS_00012313|Name=TCONS_00012313|organism=Clytia hemisphaerica|type=transcript|length=421bp
TGTCGGGGTATCAGCAGGTGATGTTGTCATTGTATTATCAGGTAACGTGG
TCGGGGTATCAGCTGGCAAAGTTGTTTGGGTATCAGCAGGCGACGTTGTC
GGGGAATCAGGCGGTGAGGTTGTGGGCGTTAACGTTGTCGTAGGTGTGGT
cgttgttgtcgttgttgttgttgttgtagttgtaggggtggtcgttgttg
ttgttggtacCTGTAAATGGTCGTTTACACAAGAAAGGTCGTTCGTCGTC
ACATTCTCGAATATAAAATTTTCGTTCGTCCGGTGGAGTTTTTGAAGTCA
AGCATCTCCCTATAGGTTGAACATTATCGCCAATTTGCATAGTactaaaa
aatgtttcatttaatGGTGTACCATCCACCCAAGCGATGATGTGAACTGG
ATACATGCCATATACGTTGGA
Run BLAST on NCBI

transcript from alignment at sc0000143:304072..305914-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00012313 ID=TCONS_00012313|Name=TCONS_00012313|organism=Clytia hemisphaerica|type=transcript|length=1843bp|location=Sequence derived from alignment at sc0000143:304072..305914- (Clytia hemisphaerica)
TGTCGGGGTATCAGCAGGTGATGTTGTCATTGTATTATCAGGTAACGTGG
TCGGGGTATCAGCTGGCAAAGTTGTTTGGGTATCAGCAGGCGACGTTGTC
GGGGAATCAGGCGGTGAGGTTGTGGGCGTTAACGTTGTCGTAGGTGTGGT
CGTTGTTGTCGTTGTTGTTGTTGTTGTAGTTGTAGGGGTGGTCGTTGTTG
TTGTTGGTACATATTCTAAGAAAAATAACATGAATATTCCAAATTCTGAA
TATTCTACACAGGCTAGAATTTCTATCAAACCCCATACAACTTAGACGAA
ATTTAACGTCAATTGTACTTAAACTGAAGTGATTTCGAGCTTTGGCCGTA
TTACTGTTAACATCTATGAATTAAAGAGTTGTTTAGTACACTTTTTTTGA
TTATGATGGTTTCCTTCCTTGTTGTTGAATTCGATTTTTTGAAATCTTTC
ACTTTTTTCTTTGACAGCTTTGCCTGTAACATCAGTCTTAAGAATTAGTT
GTTTTCCACAAAAAAAGGACATTCGTCACCTCGTACATGTTCTTTGTTAA
TTCTACTTTGTAAGCATAAAAAGGCTACTGCTTTGTATATAAGCGAAGCC
CGGGGGGAGGGGGGTACTTGTTGATTTCTAAAAGACGGCAAAACATGGCT
TTCAAAATTGGACCCTTACAATGCAGCCGTGAAAATGTACCCTTACAGTG
CATTTTACCGAACATTTGTAGTTAGATTTCATATCTTATTTTGCCGAAGC
CACCTGAAATGAGTCTACGATGTCGACACAATGTGAGAAACAAATCAAAA
TAGGTGCGAGTCAAAACTTTAAAGATACATCATATTTTTACTGTAAGACT
TGCAATTCAGCAGTCCCCAAACACACCCTTGTAGTGCATCCAGCTAAAAG
AAGACCCTTGCAGTGCACTCTATCAAAAGTACACCGTTTACAGTGCATTT
TGAGGGTCTCGAAAAACTTACCCTTAAGGGCGGCACAATGCCGTGGGTCA
GACCATATGGGTGTCCCCCACCCCCGGGAAGCGAAGATATAATATCTCGA
ACCTATTTCGCGCCAGTGTCGCTCCTCGCCAGATAACGATATTGAGTATG
GAGAAGGGCGAAGTCCTGCTTTAGTTACCCTGATTTTGATTCAGAATTTC
TAGCTCGAAGTTTGCAAGAAAGTATTGTGCTTCATTGTTTAACAAAAAAA
TAACACTTAATACCTTTTCTGTGCCAATGTCGGCATATGCCGACAAGAGC
ATTTTCTATTTCTTTGCAGATGTCGGCATTTGCCGACATGAGCACTTTCC
ATTTCTTTGCCGCGGTTTTTTTCTTGAAGTTTATTGAAAGTTCGATTTTG
AACTAGATTTCATTAAATAGCACAGTTGAATAATTAAAATATATTTCAAA
GATGTTTTTAATAATTACACATTTTTCAACTGGGTCTTTTGACAAAAAAT
AAAAAAGAGTCAATAAATTTGCCAAACATCACGAATTCTGATAAAAAAGG
TCTGGTACTTACCCAGCTGGCAATCAACGTTATTTCAACGTTTACATAAT
GTTCACAACGTCCATATAACGTTAGACGAACGTTGAAACAACGTTGTGTG
TCAGCTGGATAAGGGATTACAGTAAGACAAACCTGTAAATGGTCGTTTAC
ACAAGAAAGGTCGTTCGTCGTCACATTCTCGAATATAAAATTTTCGTTCG
TCCGGTGGAGTTTTTGAAGTCAAGCATCTCCCTATAGGTTGAACATTATC
GCCAATTTGCATAGTACTAAAAAATGTTTCATTTAATGGTGTACCATCCA
CCCAAGCGATGATGTGAACTGGATACATGCCATATACGTTGGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_006926XLOC_006926Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00012313-exon-sc0000143-1575043694:305705..305914TCONS_00012313-exon-sc0000143-1575043694:305705..305914Clytia hemisphaericaexon
TCONS_00012313-exon-sc0000143-1575043694:304072..304282TCONS_00012313-exon-sc0000143-1575043694:304072..304282Clytia hemisphaericaexon
TCONS_00012313-exon-sc0000143-1510915933:305705..305914TCONS_00012313-exon-sc0000143-1510915933:305705..305914Clytia hemisphaericaexon
TCONS_00012313-exon-sc0000143-1510915933:304072..304282TCONS_00012313-exon-sc0000143-1510915933:304072..304282Clytia hemisphaericaexon
TCONS_00012313-exon-sc0000143-1491911889:305705..305914TCONS_00012313-exon-sc0000143-1491911889:305705..305914Clytia hemisphaericaexon
TCONS_00012313-exon-sc0000143-1491911889:304072..304282TCONS_00012313-exon-sc0000143-1491911889:304072..304282Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000143supercontigsc0000143:304072..305914 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.160817	0	0	0	3.9228	1.7358	1.2632	2.83841	0.954233	0	0	0	0.589479	0.862046	0	0	0.433868	0.529781	0	0	0	0.141379	0	0	3.38837	2.3092	0	0	0	0
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR016186C-type_lectin-like/link
IPR016187CTDL_fold
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00012313 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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