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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00012314 ID=TCONS_00012314|Name=TCONS_00012314|organism=Clytia hemisphaerica|type=transcript|length=2202bp
CGGAACTATTCGGAACTGATCTATTGTTCTTCTATTGTTCCCGTTCCGAT
TTGAACAAAGCATTTTTCTGAAATGTTCTGAAATAGACAATGGCGCGTTC
CGAAATGTCTGAATACTGTGTTTTGATTGGTTAATTCGTTCCGAAATTTC
CTTGAATTTGATTGgccgattttttccgaaaaaacaacaacaaagatggc
TGCTGAAGCGAAGGCAGTTCAGAAGTCTtgactgaatttttttcttaaat
tcagTAAGACTTCTTGAATTTAAAGCCATTTTTATGCAAAACTTGAACTG
GCTTTTATATTATTTGTTGCTGGCTTGTTTTGCTTTCATTTGGTTCAAGT
TTCATGTAATTTGCTTGATTTTTGGCGAAGTTATGTCCAATCTTACTACC
TTGACAGTCATCACATTTCAGTCAGTCAGCTTTTACTGTACACTAAGTAT
GTAAACTAGATAGATATTAGTTTCAATTTCTTAACTTTCAACTGATAAAT
ATGACAAGGATAGGTGCCTTGATTGTCTGTCAGTCTAGGTAATAATTTGC
TAAAAGTTTATTCTGTATGTAAAATTGAAATTGAATTGCCCTCATCTGAT
ATGATTCTTCGCAAAATGAGGGAGGTCGTTCAATATCAAATATTTATCAA
ATTGGATCTGTATAAGGCAAATTAATTCCTTTACCTCACATAAGTCAAGT
GAATCATTATGAAAGGGTATGGTTTTTTTATGTTTAGAATGATAAAGATA
GAAATTAAAAATGCCAAAGGAGGGTTTAAGTGAGAAAGATTGGAAGCAAC
GCTTGCAAAACTTTGCAGATGGAACTTTCCATTTTTCAACTGGCCGACAC
ACGAGTAACAAAAGATGACAAGAGGAGTACTTTGGTGTTAAAAATTGCCC
GGCGCATAACAGATGTCAGAAAATTTGTGTCGATGGAAAACCAATCATTT
GCAAGTGCGGGCTaccataaaaagaaaaaacaaaagctAAACAACCTAAG
CCAGAATGTACCAAGAGTATCAATAAGTACACCAATATCACCAAGCAGTG
TTAATTGAAAACTTTTATTGTCAAGGACATTTTCACACGCTGGAATGTAA
ACAAAGATATCGGTGAGactttgatgatattttttcccattgGTACGTac
aattttcaaattgaatttattGCTGATTTCTTCTTTGTTATAATATAGGA
TAGTTCTGTGTATTTTTGTTATGAGTTCATATTAAGATGTTCTCAATTCT
AGTCATAAGGAGTGTCAAACTGGAGTTCTAGTTGACAGGTGATTTGAAGG
TATCATCACTCAGAATATGCATTATTACAGTAAGTAGTGATTTTACAGTA
ACGCTCTATTCTTATTTTAAACGTCCTCGGCCATCAACACACAAGACAAG
TATTCCACGCTCTATTCCAAGGAATATTCAATCCCTGTCACCAAAAAACA
ATCCAAACGAGAAAAACTTGCAGCTTTCTACACCTTCACCGTACAAACGC
TCTTCAGCACCATCAGCTATTCCTGTTTTACGAAAACCTCAAACTCCATG
TCACTTAAGTGACAGTTTTAAACATACTAAAGAAAGCGCGGTAAggactt
caaaatttttattgtcgCATACTGTAgttgcaatatattttttaatttat
gtaTTTTTCTAGCGTACATGACATTTTTTATGAACAGGGACATATTTctt
ctgctttttcaaggaagAAAAGTGAAACTGTAAAAAATGGATCTTTCatt
gaaaagatttttacaagattttgaaCTGTCAAAAAATGGCCTCTCAGGAA
AAAGACTTGTTAATTTTtagagaaaatgaaagtgaaagtgatcaCGTGAC
ttgtatatattatattttgcaGCTTTTCATAGATTATTTTtatatgtata
tatttttcttgtgtATATGACATTTTCTGTGCATATGACATATTTCTTCA
GCTTTTTTTCTGGGTATTTTATGGTGTATGATTGTCAAAATGATGACGTT
TgtattttaaaatgatttttcttaTAATCAACTAACGACTCTTTTGGAAA
AACATTAAAAGCTATGAAAACGAATTCTTAAAGAATTTAAAAGTGCTTTA
ACGCtgtatttctttattctttataacattttaaactttatgttatgttt
attttccaaaaaagaaatATCCACCCCTGACTAGGTTCGAATCCTAGCTT
GG Run BLAST on NCBI transcript from alignment at sc0000143:493763..496105- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00012314 ID=TCONS_00012314|Name=TCONS_00012314|organism=Clytia hemisphaerica|type=transcript|length=2343bp|location=Sequence derived from alignment at sc0000143:493763..496105- (Clytia hemisphaerica)
CGGAACTATTCGGAACTGATCTATTGTTCTTCTATTGTTCCCGTTCCGAT
TTGAACAAAGCATTTTTCTGAAATGTTCTGAAATAGACAATGGCGCGTTC
CGAAATGTCTGAATACTGTGTTTTGATTGGTTAATTCGTTCCGAAATTTC
CTTGAATTTGATTGGCCGATTTTTTCCGAAAAAACAACAACAAAGATGGC
TGCTGAAGCGAAGGCAGTTCAGAAGTCTTGACTGAATTTTTTTCTTAAAT
TCAGTAAGACTTCTTGAATTTAAAGCCATTTTTATGCAAAACTTGAACTG
GCTTTTATATTATTTGTTGCTGGCTTGTTTTGCTTTCATTTGGTTCAAGT
TTCATGTAATTTGCTTGATTTTTGGCGAAGTTATGTCCAATCTTACTACC
TTGACAGTCATCACATTTCAGTCAGTCAGCTTTTACTGTACACTAAGTAT
GTAAACTAGATAGATATTAGTTTCAATTTCTTAACTTTCAACTGATAAAT
ATGACAAGGATAGGTGCCTTGATTGTCTGTCAGTCTAGGTAATAATTTGC
TAAAAGTTTATTCTGTATGTAAAATTGAAATTGAATTGCCCTCATCTGAT
ATGATTCTTCGCAAAATGAGGGAGGTCGTTCAATATCAAATATTTATCAA
ATTGGATCTGTATAAGGCAAATTAATTCCTTTACCTCACATAAGTCAAGT
GAATCATTATGAAAGGGTATGGTTTTTTTATGTTTAGAATGATAAAGATA
GAAATTAAAAATGCCAAAGGAGGGTTTAAGTGAGAAAGATTGGAAGCAAC
GCTTGCAAAACTTTGCAGATGGAACTTTCCATTTTTCAACTGGCCGACAC
ACGAGTAACAAAAGATGACAAGAGGAGTACTTTGGTGTTAAAAATTGCCC
GGCGCATAACAGATGTCAGAAAATTTGTGTCGATGGAAAACCAATCATTT
GCAAGTGCGGGCTACCATAAAAAGAAAAAACAAAAGCTAAACAACCTAAG
CCAGAATGTACCAAGAGTATCAATAAGTACACCAATATCACCAAGCAGTG
TTAATTGAAAACTTTTATTGTCAAGGACATTTTCACACGCTGGAATGTAA
ACAAAGATATCGGTGAGACTTTGATGATATTTTTTCCCATTGGTACGTAC
AATTTTCAAATTGAATTTATTGCTGATTTCTTCTTTGTTATAATATAGGA
TAGTTCTGTGTATTTTTGTTATGAGTTCATATTAAGATGTTCTCAATTCT
AGTCATAAGGAGTGTCAAACTGGAGTTCTAGTTGACAGGTGATTTGAAGG
TATCATCACTCAGAATATGCATTATTACAGTAAGTAGTGATTTTACAGTA
ACGCTCTATTCTTATTTTAAACGTCCTCGGCCATCAACACACAAGACAAG
TATTCCACGCTCTATTCCAAGGAATATTCAATCCCTGTCACCAAAAAACA
ATCCAAACGAGAAAAACTTGCAGGTATATATAAATTTCATTTTAGTAGTA
TATACAGTAGATTAAAAGACATTTCAGAATTACATTTAAGATTATTCTTA
GTTCTAGAGTGCTATTTTTGTTTAATGTTTCTTCCTTAACCTTTGACCCC
TGTTACTTTTTTAGCTTTCTACACCTTCACCGTACAAACGCTCTTCAGCA
CCATCAGCTATTCCTGTTTTACGAAAACCTCAAACTCCATGTCACTTAAG
TGACAGTTTTAAACATACTAAAGAAAGCGCGGTAAGGACTTCAAAATTTT
TATTGTCGCATACTGTAGTTGCAATATATTTTTTAATTTATGTATTTTTC
TAGCGTACATGACATTTTTTATGAACAGGGACATATTTCTTCTGCTTTTT
CAAGGAAGAAAAGTGAAACTGTAAAAAATGGATCTTTCATTGAAAAGATT
TTTACAAGATTTTGAACTGTCAAAAAATGGCCTCTCAGGAAAAAGACTTG
TTAATTTTTAGAGAAAATGAAAGTGAAAGTGATCACGTGACTTGTATATA
TTATATTTTGCAGCTTTTCATAGATTATTTTTATATGTATATATTTTTCT
TGTGTATATGACATTTTCTGTGCATATGACATATTTCTTCAGCTTTTTTT
CTGGGTATTTTATGGTGTATGATTGTCAAAATGATGACGTTTGTATTTTA
AAATGATTTTTCTTATAATCAACTAACGACTCTTTTGGAAAAACATTAAA
AGCTATGAAAACGAATTCTTAAAGAATTTAAAAGTGCTTTAACGCTGTAT
TTCTTTATTCTTTATAACATTTTAAACTTTATGTTATGTTTATTTTCCAA
AAAAGAAATATCCACCCCTGACTAGGTTCGAATCCTAGCTTGG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00012314-exon-sc0000143-1575043694:494633..496105 | TCONS_00012314-exon-sc0000143-1575043694:494633..496105 | Clytia hemisphaerica | exon |
| TCONS_00012314-exon-sc0000143-1575043694:493763..494491 | TCONS_00012314-exon-sc0000143-1575043694:493763..494491 | Clytia hemisphaerica | exon |
| TCONS_00012314-exon-sc0000143-1510915933:494633..496105 | TCONS_00012314-exon-sc0000143-1510915933:494633..496105 | Clytia hemisphaerica | exon |
| TCONS_00012314-exon-sc0000143-1510915933:493763..494491 | TCONS_00012314-exon-sc0000143-1510915933:493763..494491 | Clytia hemisphaerica | exon |
| TCONS_00012314-exon-sc0000143-1491911889:494633..496105 | TCONS_00012314-exon-sc0000143-1491911889:494633..496105 | Clytia hemisphaerica | exon |
| TCONS_00012314-exon-sc0000143-1491911889:493763..494491 | TCONS_00012314-exon-sc0000143-1491911889:493763..494491 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000143 | supercontig | sc0000143:493763..496105 - |
Blast
The following BLAST results are available for this feature:
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