TCONS_00012320 (transcript) - C. hemisphaerica

Overview
NameTCONS_00012320
Unique NameTCONS_00012320
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length798

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00012320 ID=TCONS_00012320|Name=TCONS_00012320|organism=Clytia hemisphaerica|type=transcript|length=798bp
NCTTGAACTTCCTGAAGACGAAGAAGCTAAGAAGAAGCACGAAGAATTGA
AAGCTTCATTCGAAGAATTGTGCAAGGTTATCAAAGAAGTCTTGGACAAG
AAAGTCGAAAAAGTTGCAGTTTCCAACCGTCTCGTCGATTCTCCATGCTG
TATCGTTACCAGTACCTATGGATGGTCTGCAAACATGGAACGTATCATGA
AAGCACAAGCTCTCCGTGACACCAGTACCATGGGATACATGGCTGccaaa
aaacatttagaaatcAACGCTGAACATCAAATCATGATTGCATTGAAAGC
TAAAGTTGACGCCGACAAGAATGACAAATCCATTAAAGATTTGATCGTCC
TCTTATACGAAACTGCTCTTTTGTCATCCGGATTCTCTTTGGAAGAACCA
AAAAACCATGCTTCTCGCATCCACAGAATGATCAAACTCGGTCTTGGAGT
TGATGATGAACCAGGTGAGATTTGCTtcttaaaattgaattttgctGATA
GTACTTCATAAAAGTGAACAATAAccagggggggggcacgcagttactac
aagacatgatgtgtagtaagtgcttcttcaacactttttttcaggaccac
caccctttgcatttactacaccttggtagtaactgttttcagaaaagatt
tccaggtaccacccctgNNNNNNNNNNNNNNNNtttcaggaccaccaccc
tttgcagttactacaccttggtagtaactgttttcagaaaagatttccag
gtaccacccctgtttttgagtgatcatcaaaaacatgctcgaaattac
Run BLAST on NCBI

transcript from alignment at sc0000143:563908..564938-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00012320 ID=TCONS_00012320|Name=TCONS_00012320|organism=Clytia hemisphaerica|type=transcript|length=1031bp|location=Sequence derived from alignment at sc0000143:563908..564938- (Clytia hemisphaerica)
NCTTGAACTTCCTGAAGACGAAGAAGCTAAGAAGAAGCACGAAGAATTGA
AAGCTTCATTCGAAGAATTGTGCAAGGTTAGTATTCATACCTTGTAAAGC
TATTTCAACACGATTAAACTGGCTAACAATAATTTGCTTAAAATTACTCT
GGGAATTATAACTATATTTCTTTATCTTGTATTGAAAATGAAATGTTTTG
GCTATGGTTTGGCGCTGAACTTGTTCTTTTGGCAATGTTTCAAAAAGACT
TCAGACAAAATGGGAATGTGGTTTCAAGTTTTCAACCTGTTTGATTTTCC
CACTTTCAGGTTATCAAAGAAGTCTTGGACAAGAAAGTCGAAAAAGTTGC
AGTTTCCAACCGTCTCGTCGATTCTCCATGCTGTATCGTTACCAGTACCT
ATGGATGGTCTGCAAACATGGAACGTATCATGAAAGCACAAGCTCTCCGT
GACACCAGTACCATGGGATACATGGCTGCCAAAAAACATTTAGAAATCAA
CGCTGAACATCAAATCATGATTGCATTGAAAGCTAAAGTTGACGCCGACA
AGAATGACAAATCCATTAAAGATTTGATCGTCCTCTTATACGAAACTGCT
CTTTTGTCATCCGGATTCTCTTTGGAAGAACCAAAAAACCATGCTTCTCG
CATCCACAGAATGATCAAACTCGGTCTTGGAGTTGATGATGAACCAGGTG
AGATTTGCTTCTTAAAATTGAATTTTGCTGATAGTACTTCATAAAAGTGA
ACAATAACCAGGGGGGGGGCACGCAGTTACTACAAGACATGATGTGTAGT
AAGTGCTTCTTCAACACTTTTTTTCAGGACCACCACCCTTTGCATTTACT
ACACCTTGGTAGTAACTGTTTTCAGAAAAGATTTCCAGGTACCACCCCTG
NNNNNNNNNNNNNNNNTTTCAGGACCACCACCCTTTGCAGTTACTACACC
TTGGTAGTAACTGTTTTCAGAAAAGATTTCCAGGTACCACCCCTGTTTTT
GAGTGATCATCAAAAACATGCTCGAAATTAC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_006929XLOC_006929Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00012320-exon-sc0000143-1575043694:564863..564938TCONS_00012320-exon-sc0000143-1575043694:564863..564938Clytia hemisphaericaexon
TCONS_00012320-exon-sc0000143-1575043694:563908..564629TCONS_00012320-exon-sc0000143-1575043694:563908..564629Clytia hemisphaericaexon
TCONS_00012320-exon-sc0000143-1510915933:564863..564938TCONS_00012320-exon-sc0000143-1510915933:564863..564938Clytia hemisphaericaexon
TCONS_00012320-exon-sc0000143-1510915933:563908..564629TCONS_00012320-exon-sc0000143-1510915933:563908..564629Clytia hemisphaericaexon
TCONS_00012320-exon-sc0000143-1491911889:564863..564938TCONS_00012320-exon-sc0000143-1491911889:564863..564938Clytia hemisphaericaexon
TCONS_00012320-exon-sc0000143-1491911889:563908..564629TCONS_00012320-exon-sc0000143-1491911889:563908..564629Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000143supercontigsc0000143:563908..564938 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
2.15476	1.49307	0	0.433255	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0.38762	0.710725	1.06045	1.51854	1.15498	0	0	1.97639	1.96761	0.645378	1.28904
Blast
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BLAST of TCONS_00012320 vs. Swiss-Prot (Human)
Match: HS90B (Heat shock protein HSP 90-beta OS=Homo sapiens GN=HSP90AB1 PE=1 SV=4)

HSP 1 Score: 226.098 bits (575), Expect = 5.903e-68
Identity = 101/134 (75.37%), Postives = 122/134 (91.04%), Query Frame = 2 
Query:   59 FEELCKVIKEVLDKKVEKVAVSNRLVDSPCCIVTSTYGWSANMERIMKAQALRDTSTMGYMAAKKHLEINAEHQIMIALKAKVDADKNDKSIKDLIVLLYETALLSSGFSLEEPKNHASRIHRMIKLGLGVDDE 460
            FE LCK++KE+LDKKVEKV +SNRLV SPCCIVTSTYGW+ANMERIMKAQALRD STMGYM AKKHLEIN +H I+  L+ K +ADKNDK++KDL+VLL+ETALLSSGFSLE+P+ H++RI+RMIKLGLG+D++
Sbjct:  560 FENLCKLMKEILDKKVEKVTISNRLVSSPCCIVTSTYGWTANMERIMKAQALRDNSTMGYMMAKKHLEINPDHPIVETLRQKAEADKNDKAVKDLVVLLFETALLSSGFSLEDPQTHSNRIYRMIKLGLGIDED 693
The following BLAST results are available for this feature:
BLAST of TCONS_00012320 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
HS90B5.903e-6875.37Heat shock protein HSP 90-beta OS=Homo sapiens GN=... [more]
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