TCONS_00012323 (transcript) - C. hemisphaerica

Overview


Name	TCONS_00012323
Unique Name	TCONS_00012323
Type	transcript
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	1491

Sequence

The following sequences are available for this feature:

transcript sequence
transcript from alignment at sc0000143:575090..576580-

transcript sequence

>TCONS_00012323 ID=TCONS_00012323|Name=TCONS_00012323|organism=Clytia hemisphaerica|type=transcript|length=1491bp
GGCATCTTCTATACGCTACGTCAGTCCGGCTATTTACTACCACTTTTATT
ACTTTAAGGTTGTATACCATCATGGGTAATGTTGTTCAGCCACATACTTC
AGGTGACAATACAGCAAAACAAGTTGTCGATCAGCAAATAAAAGGATTGA
AGGCTATCGTGACAGTCCTTTTTGATTCTATACGATTGGGTCAAGCAACC
GACAACAATTTAGGATACAAGTTGTGCGGTAACAAAATGATTGTCCAGGA
AACAAATATGTTCAGCGAGAGTAAAGAGGGTGCAACATCGGATAATATCC
AGAAAGCACTGAAAAGTATCTTTAAAGGCGATTGGGAGCAGTTAGCTAGT
GTTGCAATCAACGAGGTTATTGGGTTCATCAACCAAAAACCATCAGATTC
TGCTGAAGCAGATATTTTCTCCAAGTCCTACTTAAATTGGGAATCTGATT
CACTTATTCAAAACACCGTTTACATCCAAAAAGCGAAATGGGTTTCTGAA
GGAACNCTTTAGCACAAATTTTGCTTAAGTTCATCTAGGGTCTTTTATGC
GCAAGATCAGGGCATCTTCTATACGCTACGTCAGTCCGGCTATTTACTAC
CACTTTTATTACTTTAAGGTTGTATACCATCATGGGTAATGTTGTTCAGC
CACATACTTCAGGTGACAATACAGCAAAACAAGTTGTCGATCAGCAAATA
AAAGGATTGAAGGCTATCGTGACAGTCCTTTTTGATTCTATACGATTGGG
TCAAGCAACCGACAACAATTTAGGATACAAGTTGTGCGGTAACAAAATGA
TTGTCCAGGAAACAAATATGTTCAGCGAGAGTAAAGATGGTGCAACATCG
GATAATATCCAGAAAGCACTGAAAAGTATCTTTAAAGGCGATTGGGAGCA
GTTAGCTAGTGTTGCAATCAACGAGGTTATTGGGTTCATCGACCAAAAAC
CATCAGATTCTGCTGAAGCAGATATTTTCTCCAAGTCCTACTTAAATTGG
GAATCTGATTCACTTATTCAAAACACCGTTTACATCCAAAAAGCGAAATG
GGTTTCTGAAGGAACGCTTGCTAAAGATGCAACATCAATTCTACTTGTTG
GTCTAGCTAAAGGGATTGTGGATTATGCAACCGTTGACCCGCAAAtattc
atgtatgaaataaggAAGTCAAACCCAAAAATGGTAGACGAAGACTACCA
TAAGAAGATTACAGAATTAGAAGGGGATCTCAGGGTCACATCGATGCTGC
CTATGATCAAGAAAATGTATACAAGTAGTAAGTTACTTTGGTTACTCTCA
GGGTTTCGTTATTTACATATTTCATcaagtaaatttttatttagcAAGAC
TCTGCctaagagggctaaaaagggttgaaaatctacaatccgccattatg
gaaatttgtgcctgatccaaataacgccacacacgttttctgactcttca
aggactatactttcatgatcaaaagaaaaaatgactatacg

Run BLAST on NCBI

transcript from alignment at sc0000143:575090..576580-

Legend: exon

Hold the cursor over a type above to highlight its positions in the sequence below.

>TCONS_00012323 ID=TCONS_00012323|Name=TCONS_00012323|organism=Clytia hemisphaerica|type=transcript|length=1491bp|location=Sequence derived from alignment at sc0000143:575090..576580- (Clytia hemisphaerica)
GGCATCTTCTATACGCTACGTCAGTCCGGCTATTTACTACCACTTTTATT
ACTTTAAGGTTGTATACCATCATGGGTAATGTTGTTCAGCCACATACTTC
AGGTGACAATACAGCAAAACAAGTTGTCGATCAGCAAATAAAAGGATTGA
AGGCTATCGTGACAGTCCTTTTTGATTCTATACGATTGGGTCAAGCAACC
GACAACAATTTAGGATACAAGTTGTGCGGTAACAAAATGATTGTCCAGGA
AACAAATATGTTCAGCGAGAGTAAAGAGGGTGCAACATCGGATAATATCC
AGAAAGCACTGAAAAGTATCTTTAAAGGCGATTGGGAGCAGTTAGCTAGT
GTTGCAATCAACGAGGTTATTGGGTTCATCAACCAAAAACCATCAGATTC
TGCTGAAGCAGATATTTTCTCCAAGTCCTACTTAAATTGGGAATCTGATT
CACTTATTCAAAACACCGTTTACATCCAAAAAGCGAAATGGGTTTCTGAA
GGAACNCTTTAGCACAAATTTTGCTTAAGTTCATCTAGGGTCTTTTATGC
GCAAGATCAGGGCATCTTCTATACGCTACGTCAGTCCGGCTATTTACTAC
CACTTTTATTACTTTAAGGTTGTATACCATCATGGGTAATGTTGTTCAGC
CACATACTTCAGGTGACAATACAGCAAAACAAGTTGTCGATCAGCAAATA
AAAGGATTGAAGGCTATCGTGACAGTCCTTTTTGATTCTATACGATTGGG
TCAAGCAACCGACAACAATTTAGGATACAAGTTGTGCGGTAACAAAATGA
TTGTCCAGGAAACAAATATGTTCAGCGAGAGTAAAGATGGTGCAACATCG
GATAATATCCAGAAAGCACTGAAAAGTATCTTTAAAGGCGATTGGGAGCA
GTTAGCTAGTGTTGCAATCAACGAGGTTATTGGGTTCATCGACCAAAAAC
CATCAGATTCTGCTGAAGCAGATATTTTCTCCAAGTCCTACTTAAATTGG
GAATCTGATTCACTTATTCAAAACACCGTTTACATCCAAAAAGCGAAATG
GGTTTCTGAAGGAACGCTTGCTAAAGATGCAACATCAATTCTACTTGTTG
GTCTAGCTAAAGGGATTGTGGATTATGCAACCGTTGACCCGCAAATATTC
ATGTATGAAATAAGGAAGTCAAACCCAAAAATGGTAGACGAAGACTACCA
TAAGAAGATTACAGAATTAGAAGGGGATCTCAGGGTCACATCGATGCTGC
CTATGATCAAGAAAATGTATACAAGTAGTAAGTTACTTTGGTTACTCTCA
GGGTTTCGTTATTTACATATTTCATCAAGTAAATTTTTATTTAGCAAGAC
TCTGCCTAAGAGGGCTAAAAAGGGTTGAAAATCTACAATCCGCCATTATG
GAAATTTGTGCCTGATCCAAATAACGCCACACACGTTTTCTGACTCTTCA
AGGACTATACTTTCATGATCAAAAGAAAAAATGACTATACG

Gene-mRNA-Prot

This transcript is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
XLOC_006930	XLOC_006930	Clytia hemisphaerica	gene

The following exon feature(s) are a part of this transcript:


Feature Name	Unique Name	Species	Type
TCONS_00012323-exon-sc0000143-1575043694:575090..576580	TCONS_00012323-exon-sc0000143-1575043694:575090..576580	Clytia hemisphaerica	exon
TCONS_00012323-exon-sc0000143-1510915933:575090..576580	TCONS_00012323-exon-sc0000143-1510915933:575090..576580	Clytia hemisphaerica	exon
TCONS_00012323-exon-sc0000143-1491911889:575090..576580	TCONS_00012323-exon-sc0000143-1491911889:575090..576580	Clytia hemisphaerica	exon

Position

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
sc0000143	supercontig	sc0000143:575090..576580 -

Expression

Values :

    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	0	0	0	0	0.0538674	0	0	0	10.0842	5.90897	0	0.154362	0.572856	0.583684	737.53	520.645	0	0	0	0	0	0	0	0	0	0

Blast

The following BLAST results are available for this feature:

BLAST of TCONS_00012323 vs. Swiss-Prot (Human)

BLAST of TCONS_00012323 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0


Match Name	E-value	Identity	Description

You are here

TCONS_00012323 (transcript) - C. hemisphaerica