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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00012325 ID=TCONS_00012325|Name=TCONS_00012325|organism=Clytia hemisphaerica|type=transcript|length=2006bp
TTTACACTTCGAAAATCTCTCTAATAATGGGTACAAAATATCCTAAACTA
TATCCGAAGGTGTTCAGAAATCACGAAAATCTGAAATTTCCTTTCTCAAA
GAATTAccttttccaagaattttgtcgttaaaattttttgaaaatcccgT
AAAATTTCGGGGAGAAATTTCTAAAGGGGTCCAAAAAGCGACAAGTTAGT
TTTGTaccgattttcgattttcggcaaATGTGTCACTAGTCTCCCTAGTC
TCCTACCAAAAGTCCCCTTCTCTATTAATAAATTATAGATCGATAATATG
AACAAAGGTTTTCATAGCTGCCGACAGACTGCATAATTTGGTCTTCCATT
CTCAGCCCTACTGACAAAAGACGTCAGTTTTTGACAAAGTTTTGATCTCG
ATAATAACATGATGGAATTTTTCCGCAACGATCGAGTAAACATTAGATAA
GTTAATGGATTCACACAAGATATTATAAACGGTAAAAACGGTATCATCCA
ATTTTGAAATCCAGTTAAGACGTGACCTGAGAAAATCTCATACGTTGTAC
AGCCAATAAAATAACCCCATCCACACACGAAGGGTAATGTCATTAGTGCC
ACGTTACACGCAATCTTAATTTCTCTGAAACGTGCCGGGCGCATTGACGT
AGCTTGATCGATTTTATCTTGTTCCAACGTTGCGACCAGCACAATATCCT
TACTGATTCGTCTctccattttgatatttttgaatgccGACACCATTATG
ATTCCATATGAAACAAGCACCAAAACACAAGGAATAAAAAAACTCAACGT
TGCTGCGATAAAGAAGAAAACTGAATTATAAAGTTCGCTTGTAATAGGAA
TACGTAGTAAGCCCATTACAAGAAGCGCTAAACAATATATCCAAATTATG
ACTATTGTACGGTTCGCCGTACGCCCGTTTATGTATCTCGGGTAACGTAA
CGGCATGGATACGGCGATTCCTCTCTCGATAGTGACAGCTGTTACGTGAA
GTAAGGACGATGATCCGATGACGACGTCGAAAGTTGGGAACACGAAACTC
TGAACTTGTTGACTTGCATTTGACATAGCTCCTGAAGCGTACATAGTCAC
TAAAAGTAGTAATTGAAAAATGACCAATAAATCTGATATGGCTAAGTTAC
AAATAAAATAACCGGTCGTGTTTCGCAGATGTTTGATTTTGTAAACAGTA
AGAAGAATCAAGAAGTTANATAGTCACTAAAAGTAGTAATTGAAAAATGA
CCAATAAATCTGATATGGCTAAGTTACAAATAAAATAACCGGTCGTGTTT
CGCAGATGTTTGATTTTGTAAACAGTAAGGAGAATCAAGAAGTTCGCGAA
AAATCCGATAGGTGTTAAAATCGCTAAAACGGCGAACGTCAAAAGCCGTA
AATCAGGATTTAAGATTGCGCTTGCATCTCTCTTAGCAGATGTTGGACAA
ATGTTTTGGTATAATTCTTCATCCTCTATATTACGGTCACTACTTGCCAT
ATATCGGCATAAAGCCTCAATCAGAATTCGTGAGCTTTTATCCACATTAG
GGCAACAATGATGGTAGAATATATTTTCCTCAGGTGATATTGTGGTCCCG
TTTTGCATCATACTTTCATTCATCATTCTACAAACATTCGGTAAAATAAC
ACGAAAGAATTCTGCAGAACTTGTTGGTTGCAATTGTACGATAATATCGT
TGCATGATGTCACATTCATAATGGCGGTTGGACGTAAACACGTCGTTAAC
GGTAGTTATATCTTTAATACTTTATTCAAAATTGCGCTAAAAATAATAGA
ACAATATTGGAGTACAATCTTTgatcttcaaagtttttcatACTTGACTG
CATATAACAATTTCACTACTTTTTTGTAAGTTTTTCAACATAGAAATCGT
CCAATCATATATTTTGGTCAATACGAATCTCCTCTACAACTTCCGTCTAC
GAGAATGAAGAGTTGAGATTTCTATTATGTTGCTATTTTAATATATGTAA
CCCTGT Run BLAST on NCBI protein sequence of TCONS_00012325-protein >TCONS_00012325-protein ID=TCONS_00012325-protein|Name=TCONS_00012325-protein|organism=Clytia hemisphaerica|type=polypeptide|length=260bp
MYASGAMSNASQQVQSFVFPTFDVVIGSSSLLHVTAVTIERGIAVSMPLR
YPRYINGRTANRTIVIIWIYCLALLVMGLLRIPITSELYNSVFFFIAATL
SFFIPCVLVLVSYGIIMVSAFKNIKMERRISKDIVLVATLEQDKIDQATS
MRPARFREIKIACNVALMTLPFVCGWGYFIGCTTYEIFSGHVLTGFQNWM
IPFLPFIISCVNPLTYLMFTRSLRKNSIMLLSRSKLCQKLTSFVSRAENG
RPNYAVCRQL Run BLAST on NCBI transcript from alignment at sc0000143:63534..65539 Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00012325 ID=TCONS_00012325|Name=TCONS_00012325|organism=Clytia hemisphaerica|type=transcript|length=2006bp|location=Sequence derived from alignment at sc0000143:63534..65539 (Clytia hemisphaerica)
ACAGGGTTACATATATTAAAATAGCAACATAATAGAAATCTCAACTCTTC
ATTCTCGTAGACGGAAGTTGTAGAGGAGATTCGTATTGACCAAAATATAT
GATTGGACGATTTCTATGTTGAAAAACTTACAAAAAAGTAGTGAAATTGT
TATATGCAGTCAAGTatgaaaaactttgaagatcAAAGATTGTACTCCAA
TATTGTTCTATTATTTTTAGCGCAATTTTGAATAAAGTATTAAAGATATA
ACTACCGTTAACGACGTGTTTACGTCCAACCGCCATTATGAATGTGACAT
CATGCAACGATATTATCGTACAATTGCAACCAACAAGTTCTGCAGAATTC
TTTCGTGTTATTTTACCGAATGTTTGTAGAATGATGAATGAAAGTATGAT
GCAAAACGGGACCACAATATCACCTGAGGAAAATATATTCTACCATCATT
GTTGCCCTAATGTGGATAAAAGCTCACGAATTCTGATTGAGGCTTTATGC
CGATATATGGCAAGTAGTGACCGTAATATAGAGGATGAAGAATTATACCA
AAACATTTGTCCAACATCTGCTAAGAGAGATGCAAGCGCAATCTTAAATC
CTGATTTACGGCTTTTGACGTTCGCCGTTTTAGCGATTTTAACACCTATC
GGATTTTTCGCGAACTTCTTGATTCTCCTTACTGTTTACAAAATCAAACA
TCTGCGAAACACGACCGGTTATTTTATTTGTAACTTAGCCATATCAGATT
TATTGGTCATTTTTCAATTACTACTTTTAGTGACTATNTAACTTCTTGAT
TCTTCTTACTGTTTACAAAATCAAACATCTGCGAAACACGACCGGTTATT
TTATTTGTAACTTAGCCATATCAGATTTATTGGTCATTTTTCAATTACTA
CTTTTAGTGACTATGTACGCTTCAGGAGCTATGTCAAATGCAAGTCAACA
AGTTCAGAGTTTCGTGTTCCCAACTTTCGACGTCGTCATCGGATCATCGT
CCTTACTTCACGTAACAGCTGTCACTATCGAGAGAGGAATCGCCGTATCC
ATGCCGTTACGTTACCCGAGATACATAAACGGGCGTACGGCGAACCGTAC
AATAGTCATAATTTGGATATATTGTTTAGCGCTTCTTGTAATGGGCTTAC
TACGTATTCCTATTACAAGCGAACTTTATAATTCAGTTTTCTTCTTTATC
GCAGCAACGTTGAGTTTTTTTATTCCTTGTGTTTTGGTGCTTGTTTCATA
TGGAATCATAATGGTGTCggcattcaaaaatatcaaaatggagAGACGAA
TCAGTAAGGATATTGTGCTGGTCGCAACGTTGGAACAAGATAAAATCGAT
CAAGCTACGTCAATGCGCCCGGCACGTTTCAGAGAAATTAAGATTGCGTG
TAACGTGGCACTAATGACATTACCCTTCGTGTGTGGATGGGGTTATTTTA
TTGGCTGTACAACGTATGAGATTTTCTCAGGTCACGTCTTAACTGGATTT
CAAAATTGGATGATACCGTTTTTACCGTTTATAATATCTTGTGTGAATCC
ATTAACTTATCTAATGTTTACTCGATCGTTGCGGAAAAATTCCATCATGT
TATTATCGAGATCAAAACTTTGTCAAAAACTGACGTCTTTTGTCAGTAGG
GCTGAGAATGGAAGACCAAATTATGCAGTCTGTCGGCAGCTATGAAAACC
TTTGTTCATATTATCGATCTATAATTTATTAATAGAGAAGGGGACTTTTG
GTAGGAGACTAGGGAGACTAGTGACACATttgccgaaaatcgaaaatcgg
tACAAAACTAACTTGTCGCTTTTTGGACCCCTTTAGAAATTTCTCCCCGA
AATTTTAcgggattttcaaaaaattttaacgacaaaattcttggaaaagg
TAATTCTTTGAGAAAGGAAATTTCAGATTTTCGTGATTTCTGAACACCTT
CGGATATAGTTTAGGATATTTTGTACCCATTATTAGAGAGATTTTCGAAG
TGTAAA Coding sequence (CDS) from alignment at sc0000143:63534..65539 >TCONS_00012325 ID=TCONS_00012325|Name=TCONS_00012325|organism=Clytia hemisphaerica|type=CDS|length=783bp|location=Sequence derived from alignment at sc0000143:63534..65539 (Clytia hemisphaerica)
ATGTACGCTTCAGGAGCTATGTCAAATGCAAGTCAACAAGTTCAGAGTTT
CGTGTTCCCAACTTTCGACGTCGTCATCGGATCATCGTCCTTACTTCACG
TAACAGCTGTCACTATCGAGAGAGGAATCGCCGTATCCATGCCGTTACGT
TACCCGAGATACATAAACGGGCGTACGGCGAACCGTACAATAGTCATAAT
TTGGATATATTGTTTAGCGCTTCTTGTAATGGGCTTACTACGTATTCCTA
TTACAAGCGAACTTTATAATTCAGTTTTCTTCTTTATCGCAGCAACGTTG
AGTTTTTTTATTCCTTGTGTTTTGGTGCTTGTTTCATATGGAATCATAAT
GGTGTCggcattcaaaaatatcaaaatggagAGACGAATCAGTAAGGATA
TTGTGCTGGTCGCAACGTTGGAACAAGATAAAATCGATCAAGCTACGTCA
ATGCGCCCGGCACGTTTCAGAGAAATTAAGATTGCGTGTAACGTGGCACT
AATGACATTACCCTTCGTGTGTGGATGGGGTTATTTTATTGGCTGTACAA
CGTATGAGATTTTCTCAGGTCACGTCTTAACTGGATTTCAAAATTGGATG
ATACCGTTTTTACCGTTTATAATATCTTGTGTGAATCCATTAACTTATCT
AATGTTTACTCGATCGTTGCGGAAAAATTCCATCATGTTATTATCGAGAT
CAAAACTTTGTCAAAAACTGACGTCTTTTGTCAGTAGGGCTGAGAATGGA
AGACCAAATTATGCAGTCTGTCGGCAGCTATGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00012325-exon-sc0000143-1491911889:63534..65539 | TCONS_00012325-exon-sc0000143-1491911889:63534..65539 | Clytia hemisphaerica | exon |
| TCONS_00012325-exon-sc0000143-1510915933:63534..65539 | TCONS_00012325-exon-sc0000143-1510915933:63534..65539 | Clytia hemisphaerica | exon |
| TCONS_00012325-exon-sc0000143-1575043694:63534..65539 | TCONS_00012325-exon-sc0000143-1575043694:63534..65539 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000143 | supercontig | sc0000143:63534..65539 . |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: Biological Process
| Term | Definition |
|---|
| GO:0007186 | G-protein coupled receptor signaling pathway |
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0004930 | G-protein coupled receptor activity |
Vocabulary: Cellular Component
| Term | Definition |
|---|
| GO:0016021 | integral component of membrane |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| biological_process |
GO:0007186 |
G-protein coupled receptor signaling pathway |
| cellular_component |
GO:0016021 |
integral component of membrane |
| molecular_function |
GO:0004930 |
G-protein coupled receptor activity |
Blast
The following BLAST results are available for this feature:
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