TCONS_00012345 (transcript) - C. hemisphaerica

Overview
NameTCONS_00012345
Unique NameTCONS_00012345
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length491

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00012345 ID=TCONS_00012345|Name=TCONS_00012345|organism=Clytia hemisphaerica|type=transcript|length=491bp
GCAAATTTGGTTCAGATCTGCAAAAAACGTTGGTGGTATTCGCAAAAAAC
TTTGCAGAGAGAATATTGAAACAGACGGTACCTCGTCAAGTCTCGAAACA
TACACATCTTGTCGTCTAATCCCTCTCGACAAATCTCCAGGAGTAAGACC
GATGGGTATTGGTGAGGTACTTCGTCGAATAGTGGGCAAAGCAGTCATTT
CTGTCATCAAACCAAACATTCTCGAAAGCTCTGGTGATCTGCAGCTGTGT
GCTGGACAGAAATCAGGATGTGAAGCAGCAGTACACGCCATGAGGGAGAT
TTTCGAGGAAGAAGATACCGATGCTCTTCTTCTTTTTGATGCCAGGAATG
CATTCAATTCAATCAATCGAAAGGTCCTTCTTCACAATATACCGTATCTT
TGTCCCGTCTTGGCAACATATGTTTCGAACTGTTACAAAGTTCCTTCGCG
CTTATTTGTACAGGGAGGACTAGAAATCTCATCAACTGAAG
Run BLAST on NCBI

protein sequence of TCONS_00012345-protein

>TCONS_00012345-protein ID=TCONS_00012345-protein|Name=TCONS_00012345-protein|organism=Clytia hemisphaerica|type=polypeptide|length=163bp
QIWFRSAKNVGGIRKKLCRENIETDGTSSSLETYTSCRLIPLDKSPGVRP
MGIGEVLRRIVGKAVISVIKPNILESSGDLQLCAGQKSGCEAAVHAMREI
FEEEDTDALLLFDARNAFNSINRKVLLHNIPYLCPVLATYVSNCYKVPSR
LFVQGGLEISSTE
Run BLAST on NCBI

transcript from alignment at sc0000143:588903..589393

Legend: exonthree_prime_UTRCDSfive_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00012345 ID=TCONS_00012345|Name=TCONS_00012345|organism=Clytia hemisphaerica|type=transcript|length=491bp|location=Sequence derived from alignment at sc0000143:588903..589393 (Clytia hemisphaerica)
CTTCAGTTGATGAGATTTCTAGTCCTCCCTGTACAAATAAGCGCGAAGGA
ACTTTGTAACAGTTCGAAACATATGTTGCCAAGACGGGACAAAGATACGG
TATATTGTGAAGAAGGACCTTTCGATTGATTGAATTGAATGCATTCCTGG
CATCAAAAAGAAGAAGAGCATCGGTATCTTCTTCCTCGAAAATCTCCCTC
ATGGCGTGTACTGCTGCTTCACATCCTGATTTCTGTCCAGCACACAGCTG
CAGATCACCAGAGCTTTCGAGAATGTTTGGTTTGATGACAGAAATGACTG
CTTTGCCCACTATTCGACGAAGTACCTCACCAATACCCATCGGTCTTACT
CCTGGAGATTTGTCGAGAGGGATTAGACGACAAGATGTGTATGTTTCGAG
ACTTGACGAGGTACCGTCTGTTTCAATATTCTCTCTGCAAAGTTTTTTGC
GAATACCACCAACGTTTTTTGCAGATCTGAACCAAATTTGC

Coding sequence (CDS) from alignment at sc0000143:588903..589393

>TCONS_00012345 ID=TCONS_00012345|Name=TCONS_00012345|organism=Clytia hemisphaerica|type=CDS|length=489bp|location=Sequence derived from alignment at sc0000143:588903..589393 (Clytia hemisphaerica)
TTCAGTTGATGAGATTTCTAGTCCTCCCTGTACAAATAAGCGCGAAGGAA
CTTTGTAACAGTTCGAAACATATGTTGCCAAGACGGGACAAAGATACGGT
ATATTGTGAAGAAGGACCTTTCGATTGATTGAATTGAATGCATTCCTGGC
ATCAAAAAGAAGAAGAGCATCGGTATCTTCTTCCTCGAAAATCTCCCTCA
TGGCGTGTACTGCTGCTTCACATCCTGATTTCTGTCCAGCACACAGCTGC
AGATCACCAGAGCTTTCGAGAATGTTTGGTTTGATGACAGAAATGACTGC
TTTGCCCACTATTCGACGAAGTACCTCACCAATACCCATCGGTCTTACTC
CTGGAGATTTGTCGAGAGGGATTAGACGACAAGATGTGTATGTTTCGAGA
CTTGACGAGGTACCGTCTGTTTCAATATTCTCTCTGCAAAGTTTTTTGCG
AATACCACCAACGTTTTTTGCAGATCTGAACCAAATTTG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_006952XLOC_006952Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00012345-proteinTCONS_00012345-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00012345-exon-sc0000143-1491911889:588903..589393TCONS_00012345-exon-sc0000143-1491911889:588903..589393Clytia hemisphaericaexon
TCONS_00012345-exon-sc0000143-1510915933:588903..589393TCONS_00012345-exon-sc0000143-1510915933:588903..589393Clytia hemisphaericaexon
TCONS_00012345-exon-sc0000143-1575043694:588903..589393TCONS_00012345-exon-sc0000143-1575043694:588903..589393Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000143supercontigsc0000143:588903..589393 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
3.2869	3.12998	2.57365	1.3558	9.6911	7.75854	9.75863	10.2469	2.60775	4.03884	3.71924	4.00308	3.54898	3.93407	2.16521	4.9262	4.76856	4.06822	3.00105	1.34377	1.94096	1.55101	1.89197	1.73586	3.97382	4.95157	0.46214	2.62777	1.51323	0.598942
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00012345 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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