TCONS_00012350 (transcript) - C. hemisphaerica

Overview
NameTCONS_00012350
Unique NameTCONS_00012350
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length300

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00012350 ID=TCONS_00012350|Name=TCONS_00012350|organism=Clytia hemisphaerica|type=transcript|length=300bp
GCATAAGCTAGCTTAAGAGGAAATTGTGTCCGAGAAATGATAGGTGAAGT
GTAtggggtttttttttcaaagggaaAATTTACCTCACTCTTTTCAATGG
GAACAGTTTTAGTGACCTTAGCATATTGGTCTTTACTTTGAGCTTTTATT
CCAGCCGTCTTATCGTCTAGTTTGACATAAATTAGCTCTGCtttattttt
tctgaattttacgtCAGTGACGGTTCCAAGTTGACCATTGATCAACCTAT
CCTCTATATCAATATTACTAATTAGCATTACTCTTGCccctattttcaaa
Run BLAST on NCBI

protein sequence of TCONS_00012350-protein

>TCONS_00012350-protein ID=TCONS_00012350-protein|Name=TCONS_00012350-protein|organism=Clytia hemisphaerica|type=polypeptide|length=99bp
LKIGARVMLISNIDIEDRLINGQLGTVTDVKFRKNKAELIYVKLDDKTAG
IKAQSKDQYAKVTKTVPIEKSEVNFPFEKKTPYTSPIISRTQFPLKLAY
Run BLAST on NCBI

transcript from alignment at sc0000143:613898..614197

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00012350 ID=TCONS_00012350|Name=TCONS_00012350|organism=Clytia hemisphaerica|type=transcript|length=300bp|location=Sequence derived from alignment at sc0000143:613898..614197 (Clytia hemisphaerica)
tttgaaaatagggGCAAGAGTAATGCTAATTAGTAATATTGATATAGAGG
ATAGGTTGATCAATGGTCAACTTGGAACCGTCACTGacgtaaaattcaga
aaaaataaaGCAGAGCTAATTTATGTCAAACTAGACGATAAGACGGCTGG
AATAAAAGCTCAAAGTAAAGACCAATATGCTAAGGTCACTAAAACTGTTC
CCATTGAAAAGAGTGAGGTAAATTttccctttgaaaaaaaaaccccaTAC
ACTTCACCTATCATTTCTCGGACACAATTTCCTCTTAAGCTAGCTTATGC

Coding sequence (CDS) from alignment at sc0000143:613898..614197

>TCONS_00012350 ID=TCONS_00012350|Name=TCONS_00012350|organism=Clytia hemisphaerica|type=CDS|length=297bp|location=Sequence derived from alignment at sc0000143:613898..614197 (Clytia hemisphaerica)
ttgaaaatagggGCAAGAGTAATGCTAATTAGTAATATTGATATAGAGGA
TAGGTTGATCAATGGTCAACTTGGAACCGTCACTGacgtaaaattcagaa
aaaataaaGCAGAGCTAATTTATGTCAAACTAGACGATAAGACGGCTGGA
ATAAAAGCTCAAAGTAAAGACCAATATGCTAAGGTCACTAAAACTGTTCC
CATTGAAAAGAGTGAGGTAAATTttccctttgaaaaaaaaaccccaTACA
CTTCACCTATCATTTCTCGGACACAATTTCCTCTTAAGCTAGCTTAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_006957XLOC_006957Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00012350-proteinTCONS_00012350-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00012350-exon-sc0000143-1491911889:613898..614197TCONS_00012350-exon-sc0000143-1491911889:613898..614197Clytia hemisphaericaexon
TCONS_00012350-exon-sc0000143-1510915933:613898..614197TCONS_00012350-exon-sc0000143-1510915933:613898..614197Clytia hemisphaericaexon
TCONS_00012350-exon-sc0000143-1575043694:613898..614197TCONS_00012350-exon-sc0000143-1575043694:613898..614197Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000143supercontigsc0000143:613898..614197 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
3.62582	1.71383	0	1.23478	0	0	0.569743	0	1.48805	0.803161	0	1.86694	2.13849	0.618032	1.36885	4.47336	1.57305	0.392335	0	1.13622	3.91474	0	1.15537	1.0145	0	0	5.49816	3.47571	0.713023	5.12663
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00012350 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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