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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00012353 ID=TCONS_00012353|Name=TCONS_00012353|organism=Clytia hemisphaerica|type=transcript|length=2823bp
GAGCAACAGAAAAGAAACCACATTATCTGAAGCAAGAAAAACACCTTTAT
GCATCAACGAAATAGAAACTGAATGAAAAAGGAAGAAACTGAGaagtcag
aaaaaaaatcgaagaaGAGAAAGACTTTATAGAGTAAAATTGCATTTAAT
AGTTgatgttttaaatatttgacCATCATAAACTAAAGACCAGTAAAGAG
GACAATCAAAGCCGAAATGGAACTAAACCAATCGAGAGCTCAGTGGAATT
GTTCAtcgaaagaagaaattttgcacGGAGTGAACCTCAATCTGACGCTA
CGTCAACAAGAAATTATTAGTTGGTTCAGTTTTTCACTCTCCTTGCTAGC
CTGCATTTTCAACTTCATCATCGGCTTTTTGATGTATAAACAACGTTTGT
ATCGAAAGAAAAGTTCGTGGAGCACTTTAACCTTGATTGCCAGTGAGTGG
CTGGTGTCGCTCATTGTACTGGTCTTACACTTCGTGAAGCATAAGAACAC
TTTTTGTGATGAAGGGACATCAAGCTCTCCGcaaatcatcattttcaccA
TCGTGTTGGAGACAATTCCAACAGGAGTGCTCCTCTTTACTGCGCATGAT
CGTTACATACGACTCAAAGACCTCATCAACTACTCCAGTAATTTCAACGC
AAAGCGATTCTGGATGCACTATTGCTGTTCATTGTTACATTCGGTCCTCT
tgggatttttctttttgaatttaccgaattattggttgataatgccaTGG
ATTCTGATTCTGTATTTCCTGGTCATCTCCATCTACGGTTGTACCATCTG
TTTGAAGAGTTACGAAATCACCAAAAACCATGTCCACGAATATTCGACAA
GACTTCTAAACAAACTTCGTAAATTGATGCGTCTACACGTTCAACAAATG
TTGTTTCTTTTCTTCTGTCATGCATTACGTGTTCTTCTCTTAGCCTTCTC
ACTTTCCCATCTTTTCCCAATGGTGGCTTATTCAGTACTTTTCAATACAA
GCATCCTTCTAACGCCCTTCATTTCCTTCTTAAACGCCCTCACCCTTATA
TTGATGGACCCATGCGCACGAAGACTGGTGAAGAAGATCTTCTCATCGCG
AAACACACAACAAATCGCACCAGTAGAGGACAACAGACAACGACAACACA
GCCATCCTATACGACCTCCAGCTGTTCTTTACTTCACCAAAAGAAACAAC
CCACAAGGAGAACCTTCTCATATTGAGCTTGGTATGGGGAGAAGAGAAAT
ACGAAATAAACATGAAGATACAAAAACCTCTCCCAACCTTTCAGAAATGA
GTCATAATAAACATTACAAGATAAATTTGTTCCGAAATGTTGCCGAAAAA
TTTAGCACTTATTAAAAGATTTTGGCGGGAAGCGTTTAAAAACGATTTTG
CAGTTTTATTTTTACGTGTGTAAATAAATTTCATTGTGGATGATAAAATA
TAGCAAATTTATGATTTTTGGTTTGAATATTTTACTCTAGGGTACCTAAT
GATCAAACTTTCATAAggaacttttgaaaatattttcataaaatataatT
GGGctgatttcacaaaaatatatttagcACCTGTGCCACTGTCACCTTCT
CACTTCAGAGGACTACTTCATTTGGTTGAACGTTGAACAACAAGATAAAG
TTATTTTATTCATTAAAAATGACATCAGTCTTTCTCTAGATCGGTCAATT
TGTGTAGCATTCATTTTCTTTCAGAACGCTACAGAACCGTTAAGTTTGAG
CAGAGAAAGTCTATAAATTTGTTTCATATTGACTTGTCATTCCATTGTTT
TATAGCAAGCTTGTCATGAAAAAGAATCAAGTCAATGTACAGCAGCCTTT
AGACATCGTAAAATccaaagttcatttttattacattttaaacAAACGGT
TCCAAATAAGGTTTTCTTTGTCTTGGTAATTGTATGCGTTTTTCCAGCAA
CTCGCGGATCATGTTTACAACCGCTACACGTTCACCTCGTGTATTTGGTC
TCTCCCTCTCTCATGACATAAGCAGCTTGAATCGACCAGCGATGgagttt
ttcttctttctggAAGAGGTAGGAGGAGCTAAAGGCACATTATAAGAAAG
TCTCGTTTCTTCGATTATCATATTCTTCAACTTGTTGATATTCCAACCAT
ACTTTGCACTGACTTCAATATACCGACATTGCCATTCTTGTtccatctta
taaataaactgCTCCACATCGAATTTCCGTTCACCGTCACCTTCCGATTT
GTTCCCGACCACAATGATCGGAACTCTATTGTTATGATAATCATTACATT
CTCGCTTCAACTCCATAATAGCGTTGTAATAGTTTTCCACCTCGACTATG
GATTTTTCATCATCTACGGCAAAGACCAACACGAAGATGTTGGCACGTTG
GATGGCCACACGTTTCATGGGAGGGAAGCTATGGAGATCACAAGTGTTCA
TGATGACAGCGTTGGGCATCCCTGGCAAAGGCAGTGTTTTGTTAATGCAA
TCCTGTATGTTCTCTTTAGCGCCGTATTGGACGAAACCATGGCCGACGAC
TTGATGAATAAGGGACGCCTTGCCAGTACCTTGCCCACCGAGAAAAGCCA
CTTGTAAACAGATGCCCCAACTGCCGACGGATGTTTTACGACTCATCTCC
TTCAATGGTTTGATGAGGTTTCTTTCCGTGATCCAATATTTATACAATGT
TGTTGTTTAGTATTTTAATCTTTATGCTAATAACAGAGTAAATAGAAAGT
TAAAAAGGTGATCACATAACAAGCATCTTCTTGCTATGTGACCTGTTCAT
TGATCTAAATATACACACAGGGA Run BLAST on NCBI protein sequence of TCONS_00012353-protein >TCONS_00012353-protein ID=TCONS_00012353-protein|Name=TCONS_00012353-protein|organism=Clytia hemisphaerica|type=polypeptide|length=382bp
MELNQSRAQWNCSSKEEILHGVNLNLTLRQQEIISWFSFSLSLLACIFNF
IIGFLMYKQRLYRKKSSWSTLTLIASEWLVSLIVLVLHFVKHKNTFCDEG
TSSSPQIIIFTIVLETIPTGVLLFTAHDRYIRLKDLINYSSNFNAKRFWM
HYCCSLLHSVLLGFFFLNLPNYWLIMPWILILYFLVISIYGCTICLKSYE
ITKNHVHEYSTRLLNKLRKLMRLHVQQMLFLFFCHALRVLLLAFSLSHLF
PMVAYSVLFNTSILLTPFISFLNALTLILMDPCARRLVKKIFSSRNTQQI
APVEDNRQRQHSHPIRPPAVLYFTKRNNPQGEPSHIELGMGRREIRNKHE
DTKTSPNLSEMSHNKHYKINLFRNVAEKFSTY Run BLAST on NCBI transcript from alignment at sc0000144:32839..36950+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00012353 ID=TCONS_00012353|Name=TCONS_00012353|organism=Clytia hemisphaerica|type=transcript|length=4112bp|location=Sequence derived from alignment at sc0000144:32839..36950+ (Clytia hemisphaerica)
GAGCAACAGAAAAGAAACCACATTATCTGAAGCAAGAAAAACACCTTTAT
GCATCAACGAAATAGAAACTGAATGAAAAAGGAAGAAACTGAGaagtcag
aaaaaaaatcgaagaaGAGAAAGACTTTATAGAGTAAAATTGCATTTAAT
AGTTgatgttttaaatatttgacCATCATAAACTAAAGACCAGTAAAGAG
GACAATCAAAGCCGAAATGGAACTAAACCAATCGAGAGCTCAGTGGAATT
GTTCAtcgaaagaagaaattttgcacGGAGTGAACCTCAATCTGACGCTA
CGTCAACAAGAAATTATTAGTTGGTTCAGTTTTTCACTCTCCTTGCTAGC
CTGCATTTTCAACTTCATCATCGGCTTTTTGATGTATAAACAACGTTTGT
ATCGAAAGAAAAGTTCGTGGAGCACTTTAACCTTGATTGCCAGTGAGTGG
CTGGTGTCGCTCATTGTACTGGTCTTACACTTCGTGAAGCATAAGAACAC
TTTTTGTGATGAAGGGACATCAAGCTCTCCGcaaatcatcattttcaccA
TCGTGTTGGAGACAATTCCAACAGGAGTGCTCCTCTTTACTGCGCATGAT
CGTTACATACGACTCAAAGACCTCATCAACTACTCCAGTAATTTCAACGC
AAAGCGATTCTGGATGCACTATTGCTGTTCATTGTTACATTCGGTCCTCT
tgggatttttctttttgaatttaccgaattattggttgataatgccaTGG
ATTCTGATTCTGTATTTCCTGGTCATCTCCATCTACGGTTGTACCATCTG
TTTGAAGAGTTACGAAATCACCAAAAACCATGTCCACGAATATTCGACAA
GACTTCTAAACAAACTTCGTAAATTGATGCGTCTACACGTTCAACAAATG
TTGTTTCTTTTCTTCTGTCATGCATTACGTGTTCTTCTCTTAGCCTTCTC
ACTTTCCCATCTTTTCCCAATGGTGGCTTATTCAGTACTTTTCAATACAA
GCATCCTTCTAACGCCCTTCATTTCCTTCTTAAACGCCCTCACCCTTATA
TTGATGGACCCATGCGCACGAAGACTGGTGAAGAAGATCTTCTCATCGCG
AAACACACAACAAATCGCACCAGTAGAGGACAACAGACAACGACAACACA
GCCATCCTATACGACCTCCAGCTGTTCTTTACTTCACCAAAAGAAACAAC
CCACAAGGAGAACCTTCTCATATTGAGCTTGGTATGGGGAGAAGAGAAAT
ACGAAATAAACATGAAGATACAAAAACCTCTCCCAACCTTTCAGAAATGA
GTCATAATAAACATTACAAGATAAATTTGTTCCGAAATGTTGCCGAAAAA
TTTAGCACTTATTAAAAGATTTTGGCGGGAAGCGTTTAAAAACGATTTTG
CAGTTTTATTTTTACGTGTGTAAATAAATTTCATTGTGGATGATAAAATA
TAGCAAAGTTTATGATTTTTGGTTTGAATATTTTACTCTAGGGTACCTAA
TGATCAAACTTNNAACCAATCGAGAGCTCAGTGGAATTGTTCAtcgaaag
aagaaattttgcacGGAGTGAACCTCAATCTGACGCTACGTCAACAAGAA
ATTATTAGTTGGTTCAGTTTTTCACTCTCCTTGCTAGCCTGCATTTTCAA
CTTCATCATCGGCTTTTTGATGTATAAACAACGTTTGTATCGAAAGAAAA
GTTCGTGGAGCACTTTAACCTTGATTGCCAGTGAGTGGCTGGTGTCGCTC
ATTGTACTGGTCTTACACTTCGTGAAGCATAAGAACACTTTTTGTGATGA
AGGGACATCAAGCTCTCCGcaaatcatcattttcaccATCGTGTTGGAGA
CAATTCCAACAGGAGTGCTCCTCTTTACTGCGCATGATCGTTACATACGA
CTCAAAGACCTCATCAACTACTCCAGTAATTTCAACGCAAAGCGATTCTG
GATGCACTATTGCTGTTCATTGTTACATTCGGTCCTCTtgggatttttct
ttttgaatttaccgaattattggttgataatgccaTGGATTCTGATTCTG
TATTTCCTGGTCATCTCCATCTACGGTTGTACCATCTGTTTGAAGAGTTA
CGAAATCACCAAAAACCATGTCCACGAATATTCGACAAGACTTCTAAACA
AACTTCGTAAATTGATGCGTCTACACGTTCAACAAATGTTGTTTCTTTTC
TTCTGTCATGCATTACGTGTTCTTCTCTTAGCCTTCTCACTTTCCCATCT
TTTCCCAATGGTGGCTTATTCAGTACTTTTCAATACAAGCATCCTTCTAA
CGCCCTTCATTTCCTTCTTAAACGCCCTCACCCTTATATTGATGGACCCA
TGCGCACGAAGACTGGTGAAGAAGATCTTCTCATCGCGAAACACACAACA
AATCGCACCAGTAGAGGACAACAGACAACGACAACACAGCCATCCTATAC
GACCTCCAGCTGTTCTTTACTTCACCAAAAGAAACAACCCACAAGGAGAA
CCTTCTCATATTGAGCTTGGTATGGGGAGAAGAGAAATACGAAATAAACA
TGAAGATACAAAAACCTCTCCCAACCTTTCAGAAATGAGTCATAATAAAC
ATTACAAGATAAATTTGTTCCGAAATGTTGCCGAAAAATTTAGCACTTAT
TAAAAGATTTTGGCGGGAAGCGTTTAAAAACGATTTTGCAGTTTTATTTT
TACGTGTGTAAATAAATTTCATTGTGGATGATAAAATATAGCAAAGTTTA
TGATTTTTGGTTTGAATATTTTACTCTAGGGTACCTAATGATCAAACTTT
CATAAggaacttttgaaaatattttcataaaatataatTGGGctgatttc
acaaaaatatatttagcACCTGTGCCACTGTCACCTTCTCACTTCAGAGG
ACTACTTCATTTGGTTGAACGTTGAACAACAAGATAAAGTTATTTTATTC
ATTAAAAATGACATCAGTCTTTCTCTAGATCGGTCAATTTGTGTAGCATT
CATTTTCTTTCAGAACGCTACAGAACCGTTAAGTTTGAGCAGAGAAAGTC
TATAAATTTGTTTCATATTGACTTGTCATTCCATTGTTTTATAGCAAGCT
TGTCATGAAAAAGAATCAAGTCAATGTACAGCAGCCTTTAGACATCGTAA
AATccaaagttcatttttattacattttaaacAAACGGTTCCAAATAAGG
TTTTCTTTGTCTTGGTAATTGTATGCGTTTTTCCAGCAACTCGCGGATCA
TGTTTACAACCGCTACACGTTCACCTCGTGTATTTGGTCTCTCCCTCTCT
CATGACATAAGCAGCTTGAATCGACCAGCGATGgagtttttcttctttct
ggAAGAGGTAGGAGGAGCTAAAGGCACATTATAAGAAAGTCTCGTTTCTT
CGATTATCATATTCTTCAACTTGTTGATATTCCAACCATACTTTGCACTG
ACTTCAATATACCGACATTGCCATTCTTGTtccatcttataaataaactg
CTCCACATCGAATTTCCGTTCACCGTCACCTTCCGATTTGTTCCCGACCA
CAATGATCGGAACTCTATTGTTATGATAATCATTACATTCTCGCTTCAAC
TCCATAATAGCGTTGTAATAGTTTTCCACCTCGACTATGGATTTTTCATC
ATCTACGGCAAAGACCAACACGAAGATGTTGGCACGTTGGATGGCCACAC
GTTTCATGGGAGGGAAGCTATGGAGATCACAAGTGTTCATGATGACAGCG
TTGGGCATCCCTGGCAAAGGCAGTGTTTTGTTAATGCAATCCTGTATGTT
CTCTTTAGCGCCGTATTGGACGAAACCATGGCCGACGACTTGATGAATAA
GGGACGCCTTGCCAGTACCTTGCCCACCGAGAAAAGCCACTTGTAAACAG
ATGCCCCAACTGCCGACGGATGTTTTACGACTCATCTCCTTCAATGGTTT
GATGAGGTTTCTTTCCGTGATCCAATATTTATACAATGTTGTTGTTTAGT
ATTTTAATCTTTATGCTAATAACAGAGTAAATAGAAAGTTAAAAAGGTGA
TCACATAACAAGCATCTTCTTGCTATGTGACCTGTTCATTGATCTAAATA
TACACACAGGGA Coding sequence (CDS) from alignment at sc0000144:32839..36950+ >TCONS_00012353 ID=TCONS_00012353|Name=TCONS_00012353|organism=Clytia hemisphaerica|type=CDS|length=1149bp|location=Sequence derived from alignment at sc0000144:32839..36950+ (Clytia hemisphaerica)
ATGGAACTAAACCAATCGAGAGCTCAGTGGAATTGTTCAtcgaaagaaga
aattttgcacGGAGTGAACCTCAATCTGACGCTACGTCAACAAGAAATTA
TTAGTTGGTTCAGTTTTTCACTCTCCTTGCTAGCCTGCATTTTCAACTTC
ATCATCGGCTTTTTGATGTATAAACAACGTTTGTATCGAAAGAAAAGTTC
GTGGAGCACTTTAACCTTGATTGCCAGTGAGTGGCTGGTGTCGCTCATTG
TACTGGTCTTACACTTCGTGAAGCATAAGAACACTTTTTGTGATGAAGGG
ACATCAAGCTCTCCGcaaatcatcattttcaccATCGTGTTGGAGACAAT
TCCAACAGGAGTGCTCCTCTTTACTGCGCATGATCGTTACATACGACTCA
AAGACCTCATCAACTACTCCAGTAATTTCAACGCAAAGCGATTCTGGATG
CACTATTGCTGTTCATTGTTACATTCGGTCCTCTtgggatttttcttttt
gaatttaccgaattattggttgataatgccaTGGATTCTGATTCTGTATT
TCCTGGTCATCTCCATCTACGGTTGTACCATCTGTTTGAAGAGTTACGAA
ATCACCAAAAACCATGTCCACGAATATTCGACAAGACTTCTAAACAAACT
TCGTAAATTGATGCGTCTACACGTTCAACAAATGTTGTTTCTTTTCTTCT
GTCATGCATTACGTGTTCTTCTCTTAGCCTTCTCACTTTCCCATCTTTTC
CCAATGGTGGCTTATTCAGTACTTTTCAATACAAGCATCCTTCTAACGCC
CTTCATTTCCTTCTTAAACGCCCTCACCCTTATATTGATGGACCCATGCG
CACGAAGACTGGTGAAGAAGATCTTCTCATCGCGAAACACACAACAAATC
GCACCAGTAGAGGACAACAGACAACGACAACACAGCCATCCTATACGACC
TCCAGCTGTTCTTTACTTCACCAAAAGAAACAACCCACAAGGAGAACCTT
CTCATATTGAGCTTGGTATGGGGAGAAGAGAAATACGAAATAAACATGAA
GATACAAAAACCTCTCCCAACCTTTCAGAAATGAGTCATAATAAACATTA
CAAGATAAATTTGTTCCGAAATGTTGCCGAAAAATTTAGCACTTATTAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00012353-exon-sc0000144-1491911889:32839..34295 | TCONS_00012353-exon-sc0000144-1491911889:32839..34295 | Clytia hemisphaerica | exon |
| TCONS_00012353-exon-sc0000144-1510915933:32839..34295 | TCONS_00012353-exon-sc0000144-1510915933:32839..34295 | Clytia hemisphaerica | exon |
| TCONS_00012353-exon-sc0000144-1575043694:32839..34295 | TCONS_00012353-exon-sc0000144-1575043694:32839..34295 | Clytia hemisphaerica | exon |
| TCONS_00012353-exon-sc0000144-1491911889:35585..36950 | TCONS_00012353-exon-sc0000144-1491911889:35585..36950 | Clytia hemisphaerica | exon |
| TCONS_00012353-exon-sc0000144-1510915933:35585..36950 | TCONS_00012353-exon-sc0000144-1510915933:35585..36950 | Clytia hemisphaerica | exon |
| TCONS_00012353-exon-sc0000144-1575043694:35585..36950 | TCONS_00012353-exon-sc0000144-1575043694:35585..36950 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000144 | supercontig | sc0000144:32839..36950 + |
Blast
BLAST of TCONS_00012353 vs. Swiss-Prot (Human)
Match: DIRA1 (GTP-binding protein Di-Ras1 OS=Homo sapiens GN=DIRAS1 PE=1 SV=1) HSP 1 Score: 78.1814 bits (191), Expect = 8.402e-16 Identity = 43/147 (29.25%), Postives = 88/147 (59.86%), Query Frame = -1
Query: 2020 IMNTCDLHSFPPMKRVAIQRANIFVLVFAVDDEKSIVEVENYYNAIMELKRECNDYHNNRVPIIVVGNKSEGDGERKFDVEQFIYKMEQEWQCRYIEVSAKYGWNINKL-KNMIIEETRLSYNVPLAPPTSSRKKK-NSIAGRFKLL 2454
I +T H FP M+R++I + + F+LVF+V ++S+ E+ Y I+++K D +P+++VGNK + + +R+ D + + QEW+C ++E SAK +N+ +L + ++ ETR + ++ + S ++K+ + + G+ L+
Sbjct: 59 ITDTTGSHQFPAMQRLSISKGHAFILVFSVTSKQSLEELGPIYKLIVQIKGSVED-----IPVMLVGNKCD-ETQREVDTRE-AQAVAQEWKCAFMETSAKMNYNVKELFQELLTLETRRNMSLNIDGKRSGKQKRTDRVKGKCTLM 198
The following BLAST results are available for this feature:
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