TCONS_00012391 (transcript) - C. hemisphaerica

Overview
NameTCONS_00012391
Unique NameTCONS_00012391
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length4053

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00012391 ID=TCONS_00012391|Name=TCONS_00012391|organism=Clytia hemisphaerica|type=transcript|length=4053bp
GAAAAGTTTGTTGTTTGTATGAGTTTTTTTTTAGTCTGGCGCGCTGGTTT
TTTAGTGACTGGGAAAgtgaaatggtcaaaaattggattGCCATACCCTT
TTGTTAGATTTTTCATAATCTTGTTAAATTTTGATTGACCTTGTAGAAAG
TAGTAATTTGATGGAAATTCGATTCGCAGAGACATTTTTGCACAGGTGGG
TGGTTCTCAAAgtcaaatattgaaaaaaaaaatgtccaaTTTGATAAAGT
GTTTTGGATATAaagattttgagcttttggaaAAGTTTGTATGCGCTCTG
ATGAGTTTTGGATAGGCTagacttttatttcatcccgGAAACCGGTCTAC
GCTAGAAACCTTTATTGGAAAACCTTAAATGTAGAAAGTATGGAAAATCC
TCCATAGAAATGTTCTCATGTTTATTGtctgaaaatattaattttctatt
gtctttactgtctgagggaagaaaaaatgaatatatTTTGACACAGTGGT
GGAGAGCAGAAGGCAATCGCATTTATTAGGAGAATCGTCGAAGATTAAAG
CAAAGCTTAGGCTCTGGGTGGAAAATGGACCACCTAGAGGAAAAAGCCAG
TAATACTGTGGAACATGTGCAACAGCTTTTACAACTTTGGAGGCATTATA
CAAACATTCTCCCTGTGGAAGACACTTCCGTCAAAAACATTGCAAACGAT
ATTTGTTGTTTACTCTCTAAGACCAATAGCATGGATGCCTTGTCTGTGTT
TCTCAATGAACTTCCAAATACCGATGTTTATTGGACTGAGGAATGTATTC
TTCGAGCAAAAGCCGAGGTAGCACTACACAAAAAAGACACAGACACTGTG
AAAAAGATTCTCAAGGAGAATCAATTCACCAACCATGACAAGCTGGTGGA
AATATGGGACAAAGCCCACTACATTGAGGAGGAAAACcgacaaaataaaa
agttatcaGCTTTGTCCAGATTTCGAGTTCGAAAAAGAAATCCTCCCCCA
AGGACAATATGTCTAAATGGTATCCGAAAAACTAGTTCCTTGCCTAAGGA
AGCAACTGGTCTTCTAAAGACTTGGCTCATAAATCACAAAAGTGATCCAT
ATCCAAGCGTACTTGAGAAACAGCAGCTGGCAAATCTATCTGGCTTGACC
ATCCCTCAGGTGAAAACGTGGTTTGCCAATGCACGTCGTCGCTCAAAAAC
CAATTCCGAAATGAAGATGAAACGATGTGAAGAGGGCTTCTCGAATTCCT
TGAAACCCTCATTTTATCCTCGGAAAACAGGAAGCCCATCATCATGCACA
CTTCTCCCGTCGCCATCTTCGAGCAGTGTTTCCATGACGTCGTCAACAAG
TGATCAACATGGTAGCACAGGATTAGGGAGCAGCTATCATCATTACTTCT
CTTATGATAATATACCTCAAGGAGGCAACAATAACTGTAGCAATAATAAT
AATGACTCCCTGGTGATGTCATCTACATCATCCATGGATAGTGTTGGCGG
CGGCGGTGGTGGTGGAAATTGTGGTGTGAGTAGTGGTGGTAGTGGTGCAA
CGCCCTGGTATTCGTCATTGAACAATATACATTCCCCAGTGCTACCATTG
AGACTTGAAGACTCGTCCCACTATTCGTCTCACCATTACTACTACAACAA
TCCAAATGTTCATCACAACACCGCCCTCGCTACACATTCTACACCGCCCA
ACCTTGGCTCTGCACCTTACAATAATACAAACAATACGGGTGGGGTGCGT
TATCTTTACCCGCCCTCGTATCACCAGCATTGCAGTAATAATTATTTTGC
CACAAATTATGGTGCTAGTTTGCAGCATTGAGGTTGGATATGTCTTTGAA
CTGGTGAGCTATTTTCCTTTGCCCATCGGATAATATATATCTGCATTGAC
GAGGCAAAGATGGCAGCTTGTTTTGGACTGTAAATTCGTTAGAGAATTGA
TACAGTGGGGAAACTTAATCGACATACTGTATTCTAATCATCAATTTTGT
GGTGATCACTGTTTGGAAATATTACTGGAGATTGTAGACGATGATGGCTT
TTATTTTGAGAGCCNGTAGCACAGGATTAGGGAGCAGCTATCATCATTAC
TTCTCTTATGATAATATACCTCAAGGAGGCAACAATAACTGtagcaataa
taataataactcCCTGGTGATGTCATCTACATCATCCATGGATAGTGTTG
GCGGCGGCGGTGGTGGTGGAAATTGTGGCGTGAGTAGTGGTGGTAGTGGT
GCAACGCCCTGGTATTCGTCATTTAACAATATACATTCCCCAGTGCTACC
ATTGAGACTTGAAGACTCGTCCCACTATTCGTCTCACCATTACTACTACA
ACAATCCAAATGTTCATCACAACACCGCCCTCGCTACACATTCTACACCG
CCCAACCTTGGCTCTGCACCTTACAATAATACAAACAATACGGGTGGGGT
GCGTTATCTTTACCCGCCCTTGTATCACCAGCATTGCAGTAATAATTATT
TTGCCACAAATTATGGTGCTAGTTTGCAGCATTGAGGTTGGATATGTCTT
TGAACTGGTGAGCTATTTTCCTTTGCTCATCGGATAATATATATCTGCAT
TGACGAGGCAAAGATGGCAGCTTGTTTTGGACTGTAAATTCGTTAGAGAA
TTGATACAGTGGGGAAACTTAATCGACATACTGTATTCTAATCATCAATT
TTGTGGTGATCACTGTTTGGAAATATTACTGGAGATTGTAGACGATGATG
GCTTTTATTTTGAGAGCCGTATCTTTCTGTCAAGATAGCGTTTAGTGGTT
TTTGATGTGATTTTGATTTAGTTATTTAGATTATTTATTTAGAAAGTGGG
TTATTTTTGGTTTCGttgaatttcaaagaattttctcTGTAAATACTATT
AAGAccaaaaagttaaattaaaagagTTTTTCCCAATTCATGTAATGAAT
TTgggatttttagaaatttattattttattgttattagatttttaagaac
attaaaaaaatgagaatttcagattttgttacattttgttagattttgat
attttttaaacataatttatttttttgattgtcAATGTGTGTCAAAAATT
CTAATCACGagtttcaaacaaaaatgaagGACGAATCAAATATCAACACC
gagaatattcaaaatttgcaaaGTCATTCAATCGAACCTTTAATTTGGAG
ATTTCGATTTCATACTTAATTGATgagtttctatttttttgtgTGTATTC
TTTTCATTGGTCGATTTCAGTTTTAAACCGTTTATCCCTAAACtgcttta
atgggataaactttttgcggggattaaatttcgcagatttcgcgaaaatc
cgcgaaattaagtcccaatggaaatttggaagggcctcttccgcgaaata
tttctaaacaaaactcaaaatatgtcagataaatactatttgaatggtta
cttgcatcaaagaagcgccaataatgtgtatttcaacaaccaacatgcat
gatttgccAGTAAAAgccacaaaatcgtgaaaataatGGCACCCAATAGT
GttacccgcgaaattaagtccccgcgaaatttttgaatttcgcggatcgA
CCTAGGCCCaaccacgaaatttaatccccgcgaaagtttatcccattaaa
gtagtgaTTTTTGCAGTTTTTGTGCATTCCAATGAAAAGCAATGGTTGAT
AGCGATACTCCcatcatttaaaaaatctttaatttcgTTTTCATTAAGGA
TTTTAATTCAACCTACCGATGCATCTAATCCTTAAGGGCTCTCTGACcat
agtaaaaaaaataaaaaatatgaaaaatcgcTATGATCAAAGCCCTTAAG
GTATATCATATCAGTTAGAAATTTTTACAGTCATTCGAAAGaagtttatt
tttgttaaagtttttcgTTAAGTTGCATTTTgggatttcttttaaaaaca
acattataaaaaatgatttaaaaaaatcgaaaccatacattatttattca
tttgttAAACCTTCGAGCACCCCgggtggggggggggcacaCTTGTAAAT
TTA
Run BLAST on NCBI

transcript from alignment at sc0000144:219817..232001+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00012391 ID=TCONS_00012391|Name=TCONS_00012391|organism=Clytia hemisphaerica|type=transcript|length=12185bp|location=Sequence derived from alignment at sc0000144:219817..232001+ (Clytia hemisphaerica)
GAAAAGTTTGTTGTTTGTATGAGTTTTTTTTTAGTCTGGCGCGCTGGTTT
TTTAGTGACTGGGAAAgtgaaatggtcaaaaattggattGCCATACCCTT
TTGTTAGATTTTTCATAATCTTGTTAAATTTTGATTGACCTTGTAGAAAG
TAGTAATTTGATGGAAATTCGATTCGCAGAGACATTTTTGCACAGGTGGG
TGGTTCTCAAAgtcaaatattgaaaaaaaaaatgtccaaTTTGATAAAGT
GTTTTGGATATAaagattttgagcttttggaaAAGTTTGTATGCGCTCTG
ATGAGTTTTGGATAGGCTagacttttatttcatcccgGAAACCGGTCTAC
GCTAGAAACCTTTATTGGAAAACCTTAAATGTAGAAAGTATGGAAAATCC
TCCATAGAAATGTTCTCATGTTTATTGtctgaaaatattaattttctatt
gtctttactgtctgagggaagaaaaaatgaatatatTTTGACACAGTGGT
GGAGAGCAGAAGGCAATCGCATTTATTAGGAGGTGAtcgttttgaaattc
ttttcttttgttattcaCCGTTAAACATATCGCTTCACACTTTTTGTGAT
GCgatatctttttatttggaatgtctttttggaatttgtttGGAAAGGGA
AATCTTATACTTTATGCTGGGTCATAACAATAACAATTTTTTGCATACAG
AAAAAAATGTTAGAATAAAGTTGAATGtggataattaaaagttttaacat
tttttgtttggacTTTTTTGTTTAGCATTAATTGTTTATCttgataattt
tcttttctataGAATCGTCGAAGATTAAAGCAAAGCTTAGGCTCTGGGTG
GAAAATGGACCACCTAGAGGAAAAAGCCAGTAATACTGTGGAACATGTGC
AACAGCTTTTACAACTTTGGAGGCATTATACAAACATTCTCCCTGTGGAA
GACACTTCCGTCAAAAACATTGCAAACGATATTTGTTGTTTACTCTCTAA
GACCAATAGCATGGATGCCTTGTCTGTGTTTCTCAATGAACTTCCAAATA
CCGATGTTTATTGGACTGAGGAATGTATTCTTCGAGCAAAAGCCGAGGTA
GCACTACACAAAAAAGACACAGACACTGTGAAAAAGATTCTCAAGGTCAG
TTTTCTTATtctattttgtcatttttcgtGTAGATAGGGCCTTATACGca
acattcgaattttcttcaaaaacaaagtatgaaaaacgaaagtgaaagtc
agAAGCGCTCGCTGTGCTAAAGAACCACAATTCTCACACACATTTCACAG
TTCAGGTCGAgtcaaaccaaaacaaatcagcttaaaaaacaaaagacaag
AAACATTGAATGGAGGAAACATGATATACTTTTGGTAATTATAATACTTT
GTGATGAAAAATGATTGATCTCCTCGTGGTTTTATCTTTGTTGGACTAAA
CTTTACACACTTTTTACTCatcaaaagttctttttttcttcaaatagaAA
CTTATTTTGTAAGACAGCTTGTAAGTAGTCACACTTTTTTTAGTGAATTT
TGAATAGTAGAGCATTTCAtgccaaaaaaagttttatctAACTGTCTTAT
ATATTTAGACAAAAATGCTTTTTATTTGTACATCATAGGCAGGGCCTTGC
CGTGTATGGTGGCACACACCTAAGATGGTTTGCAAGTGCTAAAATAACAc
tcctaaaatatacaagaatgTACAAAATCCTTTTTGCAAGGGCTAATAGC
ACACCATAATCTATGACATATCTTTTATGGAGTGCTATATTGACACACGC
AAGTTATTGTTCATGGCAAGGCCTGATAAGTAGTGTAAGGTAGGTATAGA
GgagtttcaatgttttgattttgtaaggACGGACTGATGTGGGCAGTTAG
TCActctagcgtcccgccaaaatgcgtatcaatgctgcgaaagcgctata
ttgtttacctgactctcaagcaaaaaatgtgccgcaaaacttctaaaggg
attcatggaaaaataacccggcgcttttaaatgaaattaacgTTCTCAAA
atctatgagaaattgcctaaaatttgacccATAGATGTaataatttgagc
caagccaaccttgagaactaatttgaagatcaacttcccaagaaaaagat
ctatggAGGAGATGGAAcccaccgccggataggctatttcccggaaattt
tgccggacctcaaagaCTGACCCATTttcatgtgcggaattatttttact
ttagcgttaAACTtagccttaaaaatcgaagcgctgtctcgggaattgaa
cgacaaattttggttggttgattttggctgctgcacgttttattttgttt
caaactttcaagtttttattaattgtcttccgaacttgattcaggtaact
ctcatccttgttgttgcaaatacatcctgtagatgactgatgttgttttt
tctgaaagctagattcctagtgtgactaactggtgGGCAGGCGATTGCGC
TTGATTATTAGAGGCAAATCAGGTAAAAGACTTACAATTTATATGGAAGC
AAGTgaatatcaatcaaatttttgacaaCTACCAGTCATATCtcttcaaa
atttatgaatGGTAAGGCTGTTTACCTCTGAGAAAACAtgctaaaatttc
ttttcaaaagtccTACCAGAGActttgtcaaaacaaaaaatctgctTGCC
TCCAGCTTATGGTCTTTTTGCCTCCAAAAGATCTGGCCATAAGTCACATG
AGTAAACAAATGGCGTATCACAAAAGCCGTCAATAGTAGCCAAAACACtg
actgaaaattttttaaagaagtaaCTGTTGGATGTTGCAACAGATAGTAA
GGAGTTTTTGCCTAGTTAGGAAAGTATTTTACATCCCTGATCTAGTCTAG
ACACCCTTCAAGTTGCATATTATCTAAACTCCACTGACTACATCActaaa
acaatgataagaaaatatttaatgCATCGTTGTGATGCTGGGGTTTTTAA
CCATTCAACATGCCATCATGTCCTGCAAAAAGTCTATTAAGCCTATCTat
cctaggggggggggctttttctGATCAGGGGTGAAACAATTGTTAATAGC
TCCCGAAATAATAGAGGTTTTGGGATGAAAATAAATGTGATGTGATGtaa
atttctaacttttatttagtttcaaaataaaaaaaattcgacACCTAAaa
cttttcacaccttgagcatgatgacatttctgacagtaaggtgtcacaaa
aattggcACATCtcaaatacaaatttatttttcgtgtcaaatatattgtt
taaaccgtaatttattgtatatttaggataaaataagcttTTTAGAACtc
agccaaatttcatccaaaaagacccactagatcacaagttaaggggtggt
acatgAAAAGCCCCctccctagttctgaaccgcccctaaaagtctagtat
gaatagggttaaagccaAACTATTGTCAGAATTTTGTATGAAATGAAGAT
GGTTAGATCTTTCAATTTCTTGAgtgtttttgaagaaagaaataGTTAAT
TTTTCTAGAAATGTCAACAAACTAAAAATGCATCGTCACATTAAGGGAAC
CAAATTGTCTTCCCAAGtctatttttggacctaccccggtgggctgtagg
tcctataaattaacctctgttcgttcgtccgttcgttcgtccgttcgtta
ctagcttttctcgggattggtcattagtttttcctaatttttggcacaaa
gatgcaaaatggtaatgcccaaaatgtgacggagcccgattttcgaaaaa
aattcatttccggccgaaaaNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNtttcgctaaacgatatattttctgactgatttttttctcctcg
cattgctatctaactttcatcatcaggtaggtccattcagcatctagctt
gttttaaTAAATActataagttggtctaatatcaacaATCCAGATACCCT
TCAGAGTTTGGAAAAAAAGGAAGGTTGGAATCACTGAGTGAAACTATATT
TCTTCTCTCAATCAGTCATTCTGACCTTCCTGTTATTCCTATCTCCTAAG
AAGGGTGTAAGGATAAGATGATTACGGTATTGATCCAACATGTTCAAAAT
ATACTGAAGCAAGACTTTTCCTCAGAATTACCCTGTTGTGAGAGCTACAA
TGTTCTTTGTGTGCACagacttgttaaaagcaaactaacttttttaaatg
atcaattaggtctataagatccaaaaaacgagtggtgagaaaaattttga
ccattttgctggtccccatgtgacgtcatcacttttgctggggcttgaaa
acgaaagttaaaattaGAAGCTCTtatatggctcaaatgaaagatattta
tccaaggattcaaaaaaatatcagaacatatacctgaaaatttttgagaa
gctataaaggaaaatagctcaaaaaatgacgtcatcgatgacgtcatcgg
caattaaaaaatcgtcgaaatcgagaaatttttgtttcatttgaaagagg
acctgcttgggaacaaaaaatattactacagAAAACCTTGAATTTCAATT
GATAGGAAATTATTCCGTGAAATGCGTttgacttgactctcaagctttTT
AAAGATTCCTGGGCGTGCCCGAAACTAACCTTTCGTAggcaaatttaatg
aattacaaaTTTGCTGACAGGGGCCTATAAGGAGAAATTCAGGTAGAAGA
AAACCGATAGAAGAAAATACTTTCAGGTATAAGTTATGATACTTTTTGGA
ACCCGtggaaaaatatctttcatttgagccatatatgagcttctaatttt
cactttcattttcaagccccagcaaaagcgatgacgtcacatggggacca
gcaaaatggtcaaaatttttctcaccactcgtttttgtgattttatggac
ctaattgatcatttaaaaaagttagtttgcttttaacaactctgtgcaca
cgaagaaTGCTTTCAGAACATAGTGGCTCTCACTATGTACATAAGTGTAA
CatatctgaaaaatgaaaacagccGGGTGTATCCCTTTAGATTAAACTTG
TACTTAAAATTAACTTTTTGTTGCCTAAGAAAAGAGAGAAGCAAagttag
tcccaataaggttaGTAAAATTAACaaacttttcctttttcttgctCCTC
TTTagtcctgctaagggtccgacGGTCCAAAGTTGGGTGGTACACCCCCG
GTCAGCTCCCAACCCTAATAACCACCTCCTCAGTATAACTAATGCCAAAA
CATAGGAAATGAGGGAGAAAAGTTTTCATGTTTGTTGGTTGTACTTCCAT
CAGTTGTCATTGTCATTGTTTCAAGAAAATCTATTAAATTTCTCCTCTCA
AGAATCAATCTTCCTTGAAAAACACAATAATGCATTTCTTGACAAGAGat
ctttgaatttttatttgatgagTTTTAGCTCTGGTCTCTTCTCTTGAAAA
GGTAGCGTAATCTTGAAAGCTTCATGTCATGTTTAGCTTGAAACGAgcct
ttttcaaaataatcagaTCGTATCTTTTAACAAACTATTCTATTCAACGT
GTAGGAAAGTTAATgaaaatgtatcaaaaaatgaaatattttcccCTTTT
CAATCACAAAATCCTGGTGTTATAAAGATGATTATTTCCAACGCAATACT
CATTATTTGATCATTAGATGCCTCCCTTTTTTCTTTCTCTGAATACATCA
AAATAACTGATTTGTTACTCTTATCGCAATGATATGTAATCCTTTTGAAA
CATTAGATCATCGTTTTAGAAAATGACCTGATACAAGCCATAAAAATTGG
AGATTGGAGATTGGACAAATGAGTAGCTTAGCTATCCGAGCTAGAAGGag
gatttttctttgaaaatacaagaaCAACTCCTGTATTCTCCAAGGAAAAT
AAATTGCATACTTTCCAAGAAAAATATCATCTAAATTTCCATACTTTTCG
ACACATCAATTGACCAGAATTAATAATGAACAAgctcaaattttctaaat
ttgctATAAACATAAACCTAGCGATTGTGACGAATCATTATGACTTGact
ctttttattttatattatcaACACCATGTTATGTGtacaaataaaattat
taacaattaattcaaaaaaataaaaatcggttcataaattacaaaaatga
tacgtaattaaaataactttcGATCTCTTCTTCCATTTCAGGAGAATCAA
TTCACCAACCATGACAAGCTGGTGGAAATATGGGACAAAGCCCACTACAT
TGAGGAGGAAAACcgacaaaataaaaagttatcaGCTTTGTCCAGATTTC
GAGTTCGAAAAAGAAATCCTCCCCCAAGGACAATATGTCTAAATGGTATC
CGAAAAACTAGTTCCTTGCCTAAGGAAGCAACTGGTCTTCTAAAGACTTG
GCTCATAAATCACAAAAGTGATCCATATCCAAGCGTACTTGAGAAACAGC
AGCTGGCAAATCTATCTGGCTTGACCATCCCTCAGGTGAAAACGTGGTTT
GCCAATGCACGTCGTCGCTCAAAAACCAATTCCGAAATGAAGATGAAACG
ATGTGAAGAGGGCTTCTCGAATTCCTTGAAACCCTCATTTTGTAAGTATT
CAAGCTCGTAGGACTTCTTTTTCTATGGTTTTCCATGCTTCATTAGCAAG
ACCAGAAGTGCTCAGTGCTATCGCAGCATGTTCAAATGGCCTATGTTCTG
TTCGCTGTTCTGTCCGTTCTTCTTTAAGGAGTGAATTCTTGTTATTGTTT
CTGCTAAAAAACGCAATAAAGATGACGAAAAATGTTTATAGAACTGCGGT
TGAAAAACTCGAAATTGATCAGACAGGATCAACTATTgataaaacataat
tttttagcaattttttttatcttatatCCTGTTTCAAACCTACTACTTTT
GCTACTTTAATACTCTTTATTCGACCTAGTTTAAGATAaatcaaaatact
ttttaaacatgagaatttttaaaggttttatcaAGAAAAATGATTGGACT
TTGGAAGGATTTTCTCAACAATAAATAACGCTCCCtctttgtttctattt
ttaCGTTTCTATTTCTATTACTCTTGCACAGACATTTTTCTCATAAATGT
CAAGGTGTATCAACTTTAAACACatcaaatttcaataatatggaaggctg
ttttttttaaaagaactattgcacaattttagttttttatcaTTCATTTA
AAAGATATTTGACCTCGATCTCACATTAAGAGGCAATTAAGAAGAAAATA
TCACAAACTTTTAACCTTATGAATTTCTAATATCAATCTACgctttcaat
tttcaaacttctgTGTAATCAGACCCGATATACAAAGCGATAAACTTTTG
TTGTAAGATGTTTCCTAATcccaataaaatattgaaattaattGAACTAA
TGCTTTCTTCAGATCTTCAGACATCTCCCTCTACTCATTAACATCAATTC
CTAACATCTTCATTAAACTTTAGATCCTCGGAAAACAGGAAGCCCATCAT
CATGCACACTTCTCCCGTCGCCATCTTCGAGCAGTGTTTCCATGACGTCG
TCAACAAGTGATCAACATGGTAGCACAGGATTAGGGAGCAGCTATCATCA
TTACTTCTCTTATGATAATATACCTCAAGGAGGCAACAATAACTGTAGCA
ATAATAATAATGACTCCCTGGTGATGTCATCTACATCATCCATGGATAGT
GTTGGCGGCGGCGGTGGTGGTGGAAATTGTGGTGTGAGTAGTGGTGGTAG
TGGTGCAACGCCCTGGTATTCGTCATTGAACAATATACATTCCCCAGTGC
TACCATTGAGGTATTTCCTGTTTCCACTTCTCTAATGGGCAGGATTGCGA
TTTTAGCAAGTTAATCAGTCATACTTCTTTCTTTAACTTGGCCTCTGTGG
AAGAGATTATTTCATGGTTTTTAATACTTTATTAGCATTCTTTAAATGGA
GTCTACTTTCTCTGTTTGGGAAGGGAACTCTGGCAGAAATATGTTCTGGG
TATCATAGGCGGTTTTCTTCAACCCTGATACCCGAGGCCTATTTTGAAAC
TATAAAAGTCTTGCAAAATGTCACCTCCTAGTTAACCAGTGTGTAATTGT
AAGGTTAAATTATTTCTGAAATGATTACTTCTTAACAGAACCAACCATTT
TAATATATTCATTTTCCCTCAGACTTGAAGACTCGTCCCACTATTCGTCT
CACCATTACTACTACAACAATCCAAATGTTCATCACAACACCGCCCTCGC
TACACATTCTACACCGCCCAACCTTGGCTCTGCACCTTACAATAATACAA
ACAATACGGGTGGGGTGCGTTATCTTTACCCGCCCTCGTATCACCAGCAT
TGCAGTAATAATTATTTTGCCACAAATTATGGTGCTAGTTTGCAGCATTG
AGGTTGGATATGTCTTTGAACTGGTGAGCTATTTTCCTTTGCCCATCGGA
TAATATATATCTGCATTGACGAGGCAAAGATGGCAGCTTGTTTTGGACTG
TAAATTCGTTAGAGAATTGATACAGTGGGGAAACTTAATCGACATACTGT
ATTCTAATCATCAATTTTGTGGTGATCACTGTTTGGAAATATTACTGGAG
ATTGTAGACGATGATGGCTTTTATTTTGAGAGCCNGTAGCACAGGATTAG
GGAGCAGCTATCATCATTACTTCTCTTATGATAATATACCTCAAGGAGGC
AACAATAACTGtagcaataataataataactcCCTGGTGATGTCATCTAC
ATCATCCATGGATAGTGTTGGCGGCGGCGGTGGTGGTGGAAATTGTGGCG
TGAGTAGTGGTGGTAGTGGTGCAACGCCCTGGTATTCGTCATTTAACAAT
ATACATTCCCCAGTGCTACCATTGAGGTATTTCCTGTTTCCACTTCTCTA
ATTGGTAGGATTGCGATTTTAGCAAGTTAATCAGTCATACTTCTTTCTTT
AACTTGGCCTCTGTGGAAGAGATTATTTCATGGTTTTTAATACTTTATCA
GCATTTTTTAAATGGAGTCTACTTTCCCTGTTTGGGAAGGGAACTCTGGC
AGAAATATGTTCTGGGTATCATAGGCGGTTTTCTTCAACCCTGATACCCG
AGGCCTATTTTGAAACTATAAAAGTCTTGCAAAATGTCACCTCCTAGTTA
ACCAGTGTGTAATTGTAAGGTTAAATTATTTCTGAAATGATTACTTCTTA
ACAGAACCAACCATTTTAATATATTCATTTTCCCTCAGACTTGAAGACTC
GTCCCACTATTCGTCTCACCATTACTACTACAACAATCCAAATGTTCATC
ACAACACCGCCCTCGCTACACATTCTACACCGCCCAACCTTGGCTCTGCA
CCTTACAATAATACAAACAATACGGGTGGGGTGCGTTATCTTTACCCGCC
CTTGTATCACCAGCATTGCAGTAATAATTATTTTGCCACAAATTATGGTG
CTAGTTTGCAGCATTGAGGTTGGATATGTCTTTGAACTGGTGAGCTATTT
TCCTTTGCTCATCGGATAATATATATCTGCATTGACGAGGCAAAGATGGC
AGCTTGTTTTGGACTGTAAATTCGTTAGAGAATTGATACAGTGGGGAAAC
TTAATCGACATACTGTATTCTAATCATCAATTTTGTGGTGATCACTGTTT
GGAAATATTACTGGAGATTGTAGACGATGATGGCTTTTATTTTGAGAGCC
GTATCTTTCTGTCAAGATAGCGTTTAGTGGTTTTTGATGTGATTTTGATT
TAGTTATTTAGATTATTTATTTAGAAAGTGGGTTATTTTTGGTTTCGttg
aatttcaaagaattttctcTGTAAATACTATTAAGAccaaaaagttaaat
taaaagagTTTTTCCCAATTCATGTAATGAATTTgggatttttagaaatt
tattattttattgttattagatttttaagaacattaaaaaaatgagaatt
tcagattttgttacattttgttagattttgatattttttaaacataattt
atttttttgattgtcAATGTGTGTCAAAAATTCTAATCACGagtttcaaa
caaaaatgaagGACGAATCAAATATCAACACCgagaatattcaaaatttg
caaaGTCATTCAATCGAACCTTTAATTTGGAGATTTCGATTTCATACTTA
ATTGATgagtttctatttttttgtgTGTATTCTTTTCATTGGTCGATTTC
AGTTTTAAACCGTTTATCCCTAAACtgctttaatgggataaactttttgc
ggggattaaatttcgcagatttcgcgaaaatccgcgaaattaagtcccaa
tggaaatttggaagggcctcttccgcgaaatatttctaaacaaaactcaa
aatatgtcagataaatactatttgaatggttacttgcatcaaagaagcgc
caataatgtgtatttcaacaaccaacatgcatgatttgccAGTAAAAgcc
acaaaatcgtgaaaataatGGCACCCAATAGTGttacccgcgaaattaag
tccccgcgaaatttttgaatttcgcggatcgACCTAGGCCCaaccacgaa
atttaatccccgcgaaagtttatcccattaaagtagtgaTTTTTGCAGTT
TTTGTGCATTCCAATGAAAAGCAATGGTTGATAGCGATACTCCcatcatt
taaaaaatctttaatttcgTTTTCATTAAGGATTTTAATTCAACCTACCG
ATGCATCTAATCCTTAAGGGCTCTCTGACcatagtaaaaaaaataaaaaa
tatgaaaaatcgcTATGATCAAAGCCCTTAAGGTATATCATATCAGTTAG
AAATTTTTACAGTCATTCGAAAGaagtttatttttgttaaagtttttcgT
TAAGTTGCATTTTgggatttcttttaaaaacaacattataaaaaatgatt
taaaaaaatcgaaaccatacattatttattcatttgttAAACCTTCGAGC
ACCCCgggtggggggggggcacaCTTGTAAATTTA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_006968XLOC_006968Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00012391-exon-sc0000144-1491911889:219817..220348TCONS_00012391-exon-sc0000144-1491911889:219817..220348Clytia hemisphaericaexon
TCONS_00012391-exon-sc0000144-1510915933:219817..220348TCONS_00012391-exon-sc0000144-1510915933:219817..220348Clytia hemisphaericaexon
TCONS_00012391-exon-sc0000144-1575043694:219817..220348TCONS_00012391-exon-sc0000144-1575043694:219817..220348Clytia hemisphaericaexon
TCONS_00012391-exon-sc0000144-1491911889:220629..220961TCONS_00012391-exon-sc0000144-1491911889:220629..220961Clytia hemisphaericaexon
TCONS_00012391-exon-sc0000144-1510915933:220629..220961TCONS_00012391-exon-sc0000144-1510915933:220629..220961Clytia hemisphaericaexon
TCONS_00012391-exon-sc0000144-1575043694:220629..220961TCONS_00012391-exon-sc0000144-1575043694:220629..220961Clytia hemisphaericaexon
TCONS_00012391-exon-sc0000144-1491911889:227208..227607TCONS_00012391-exon-sc0000144-1491911889:227208..227607Clytia hemisphaericaexon
TCONS_00012391-exon-sc0000144-1510915933:227208..227607TCONS_00012391-exon-sc0000144-1510915933:227208..227607Clytia hemisphaericaexon
TCONS_00012391-exon-sc0000144-1575043694:227208..227607TCONS_00012391-exon-sc0000144-1575043694:227208..227607Clytia hemisphaericaexon
TCONS_00012391-exon-sc0000144-1491911889:228490..228826TCONS_00012391-exon-sc0000144-1491911889:228490..228826Clytia hemisphaericaexon
TCONS_00012391-exon-sc0000144-1510915933:228490..228826TCONS_00012391-exon-sc0000144-1510915933:228490..228826Clytia hemisphaericaexon
TCONS_00012391-exon-sc0000144-1575043694:228490..228826TCONS_00012391-exon-sc0000144-1575043694:228490..228826Clytia hemisphaericaexon
TCONS_00012391-exon-sc0000144-1491911889:229189..229892TCONS_00012391-exon-sc0000144-1491911889:229189..229892Clytia hemisphaericaexon
TCONS_00012391-exon-sc0000144-1510915933:229189..229892TCONS_00012391-exon-sc0000144-1510915933:229189..229892Clytia hemisphaericaexon
TCONS_00012391-exon-sc0000144-1575043694:229189..229892TCONS_00012391-exon-sc0000144-1575043694:229189..229892Clytia hemisphaericaexon
TCONS_00012391-exon-sc0000144-1491911889:230255..232001TCONS_00012391-exon-sc0000144-1491911889:230255..232001Clytia hemisphaericaexon
TCONS_00012391-exon-sc0000144-1510915933:230255..232001TCONS_00012391-exon-sc0000144-1510915933:230255..232001Clytia hemisphaericaexon
TCONS_00012391-exon-sc0000144-1575043694:230255..232001TCONS_00012391-exon-sc0000144-1575043694:230255..232001Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000144supercontigsc0000144:219817..232001 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.221237	0.0101921	0.0371942	0.081701	0.00037858	9.00836e-07	4.58089e-09	0.176992	0.109651	5.23924e-06	0.373635	0.0917467	0	0	0	0	0	0	0	0	0.142627	0.208478	0	0	3.04982e-06	0	5.19663e-10	0	0	0
Blast
[Close]
BLAST of TCONS_00012391 vs. Swiss-Prot (Human)
Match: SIX1 (Homeobox protein SIX1 OS=Homo sapiens GN=SIX1 PE=1 SV=1)

HSP 1 Score: 122.479 bits (306), Expect = 9.784e-30
Identity = 67/185 (36.22%), Postives = 110/185 (59.46%), Query Frame = 2 
Query:  653 NILPVEDTSVKNIANDICCLLSKTNSMDALSVFLNELPNTDVYWTEECILRAKAEVALHKKDTDTVKKILKENQFT--NHDKLVEIWDKAHYIEEENRQNKKLSALSRFRVRKRNPPPRTICLNGIRKTSSLPKEATGLLKTWLINHKSDPYPSVLEKQQLANLSGLTIPQVKTWFANARRRSKT 1201
            ++LP    + + +A  +C +L +  +++ L  FL  LP  D     E +L+AKA VA H+ +   + KIL+ +QF+  NH KL ++W KAHY+E E  + + L A+ ++RVR++ P PRTI  +G   +    +++ G+L+ W   +  +PYPS  EK++LA  +GLT  QV  WF N R+R + 
Sbjct:    2 SMLPSFGFTQEQVAC-VCEVLQQGGNLERLGRFLWSLPACDHLHKNESVLKAKAVVAFHRGNFRELYKILESHQFSPHNHPKLQQLWLKAHYVEAEKLRGRPLGAVGKYRVRRKFPLPRTI-WDGEETSYCFKEKSRGVLREW---YAHNPYPSPREKRELAEATGLTTTQVSNWFKNRRQRDRA 181
The following BLAST results are available for this feature:
BLAST of TCONS_00012391 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
SIX19.784e-3036.22Homeobox protein SIX1 OS=Homo sapiens GN=SIX1 PE=1... [more]
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