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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00012402 ID=TCONS_00012402|Name=TCONS_00012402|organism=Clytia hemisphaerica|type=transcript|length=2454bp
tgacgtcatcggcaattaaaaaatcgtcgaaatcgagaaatttttgtttc
atttgaaagaggacctgcttgggaacaaaaaatattactacagAAAACCT
TGAATTTCAATTGATAGGAAATTATTCCGTGAAATGCGTttgacttgact
ctcaagctttTTAAAGATTCCTGGGCGTGCCCGAAACTAACCTTTCGTAg
gcaaatttaatgaattacaaaTTTGCTGACAGGGGCCTATAAGGAGAAAT
TCAGGTAGAAGAAAACCGATAGAAGAAAATACTTTCAGGTATAAGTTATG
ATACTTTTTGGAACCCGtggaaaaatatctttcatttgagccatatatga
gcttctaattttcactttcattttcaagccccagcaaaagcgatgacgtc
acatggggaccagcaaaatggtcaaaatttttctcaccactcgtttttgt
gattttatggacctaattgatcatttaaaaaagttagtttgcttttaaca
actctgtgcacacgaagaaTGCTTTCAGAACATAGTGGCTCTCACTATGT
ACATAAGTGTAACatatctgaaaaatgaaaacagccGGGTGTATCCCTTT
AGATTAAACTTGTACTTAAAATTAACTTTTTGTTGCCTAAGAAAAGAGAG
AAGCAAagttagtcccaataaggttaGTAAAATTAACaaacttttccttt
ttcttgctCCTCTTTagtcctgctaagggtccgacGGTCCAAAGTTGGGT
GGTACACCCCCGGTCAGCTCCCAACCCTAATAACCACCTCCTCAGTATAA
CTAATGCCAAAACATAGGAAATGAGGGAGAAAAGTTTTCATGTTTGTTGG
TTGTACTTCCATCAGTTGTCATTGTCATTGTTTCAAGAAAATCTATTAAA
TTTCTCCTCTCAAGAATCAATCTTCCTTGAAAAACACAATAATGCATTTC
TTGACAAGAGatctttgaatttttatttgatgagTTTTAGCTCTGGTCTC
TTCTCTTGAAAAGGTAGCGTAATCTTGAAAGCTTCATGTCATGTTTAGCT
TGAAACGAgcctttttcaaaataatcagaTCGTATCTTTTAACAAACTAT
TCTATTCAACGTGTAGGAAAGTTAATgaaaatgtatcaaaaaatgaaata
ttttcccCTTTTCAATCACAAAATCCTGGTGTTATAAAGATGATTATTTC
CAACGCAATACTCATTATTTGATCATTAGATGCCTCCCTTTTTTCTTTCT
CTGAATACATCAAAATAACTGATTTGTTACTCTTATCGCAATGATATGTA
ATCCTTTTGAAACATTAGATCATCGTTTTAGAAAATGACCTGATACAAGC
CATAAAAATTGGAGATTGGAGATTGGACAAATGAGTAGCTTAGCTATCCG
AGCTAGAAGGaggatttttctttgaaaatacaagaaCAACTCCTGTATTC
TCCAAGGAAAATAAATTGCATACTTTCCAAGAAAAATATCATCTAAATTT
CCATACTTTTCGACACATCAATTGACCAGAATTAATAATGAACAAgctca
aattttctaaatttgctATAAACATAAACCTAGCGATTGTGACGAATCAT
TATGACTTGactctttttattttatattatcaACACCATGTTATGTGtac
aaataaaattattaacaattaattcaaaaaaataaaaatcggttcataaa
ttacaaaaatgatacgtaattaaaataactttcGATCTCTTCTTCCATTT
CAGGAGAATCAATTCACCAACCATGACAAGCTGGTGGAAATATGGGACAA
AGCCCACTACATTGAGGAGGAAAACcgacaaaataaaaagttatcaGCTT
TGTCCAGATTTCGAGTTCGAAAAAGAAATCCTCCCCCAAGGACAATATGT
CTAAATGGTATCCGAAAAACTAGTTCCTTGCCTAAGGAAGCAACTGGTCT
TCTAAAGACTTGGCTCATAAATCACAAAAGTGATCCATATCCAAGCGTAC
TTGAGAAACAGCAGCTGGCAAATCTATCTGGCTTGACCATCCCTCAGGTG
AAAACGTGGTTTGCCAATGCACGTCGTCGCTCAAAAACCAATTCCGAAAT
GAAGATGAAACGATGTGAAGAGGGCTTCTCGAATTCCTTGAAACCCTCAT
TTTGTAAGTATTCAAGCTCGTAGGACTTCTTTTTCTATGGTTTTCCATGC
TTCATTAGCAAGACCAGAAGTGCTCAGTGCTATCGCAGCATGTTCAAATG
GCCTATGTTCTGTTCGCTGTTCTGTCCGTTCTTCTTTAAGGAGTGAATTC
TTGTTATTGTTTCTGCTAAAAAACGCAATAAAGATGACGAAAAATGTTTA
TAGAACTGCGGTTGAAAAACTCGAAATTGATCAGACAGGATCAACTATTg
ataaaacataattttttagcaattttttttatcttatatCCTGTTTCAAA
CCTA Run BLAST on NCBI transcript from alignment at sc0000144:225455..227908+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00012402 ID=TCONS_00012402|Name=TCONS_00012402|organism=Clytia hemisphaerica|type=transcript|length=2454bp|location=Sequence derived from alignment at sc0000144:225455..227908+ (Clytia hemisphaerica)
tgacgtcatcggcaattaaaaaatcgtcgaaatcgagaaatttttgtttc
atttgaaagaggacctgcttgggaacaaaaaatattactacagAAAACCT
TGAATTTCAATTGATAGGAAATTATTCCGTGAAATGCGTttgacttgact
ctcaagctttTTAAAGATTCCTGGGCGTGCCCGAAACTAACCTTTCGTAg
gcaaatttaatgaattacaaaTTTGCTGACAGGGGCCTATAAGGAGAAAT
TCAGGTAGAAGAAAACCGATAGAAGAAAATACTTTCAGGTATAAGTTATG
ATACTTTTTGGAACCCGtggaaaaatatctttcatttgagccatatatga
gcttctaattttcactttcattttcaagccccagcaaaagcgatgacgtc
acatggggaccagcaaaatggtcaaaatttttctcaccactcgtttttgt
gattttatggacctaattgatcatttaaaaaagttagtttgcttttaaca
actctgtgcacacgaagaaTGCTTTCAGAACATAGTGGCTCTCACTATGT
ACATAAGTGTAACatatctgaaaaatgaaaacagccGGGTGTATCCCTTT
AGATTAAACTTGTACTTAAAATTAACTTTTTGTTGCCTAAGAAAAGAGAG
AAGCAAagttagtcccaataaggttaGTAAAATTAACaaacttttccttt
ttcttgctCCTCTTTagtcctgctaagggtccgacGGTCCAAAGTTGGGT
GGTACACCCCCGGTCAGCTCCCAACCCTAATAACCACCTCCTCAGTATAA
CTAATGCCAAAACATAGGAAATGAGGGAGAAAAGTTTTCATGTTTGTTGG
TTGTACTTCCATCAGTTGTCATTGTCATTGTTTCAAGAAAATCTATTAAA
TTTCTCCTCTCAAGAATCAATCTTCCTTGAAAAACACAATAATGCATTTC
TTGACAAGAGatctttgaatttttatttgatgagTTTTAGCTCTGGTCTC
TTCTCTTGAAAAGGTAGCGTAATCTTGAAAGCTTCATGTCATGTTTAGCT
TGAAACGAgcctttttcaaaataatcagaTCGTATCTTTTAACAAACTAT
TCTATTCAACGTGTAGGAAAGTTAATgaaaatgtatcaaaaaatgaaata
ttttcccCTTTTCAATCACAAAATCCTGGTGTTATAAAGATGATTATTTC
CAACGCAATACTCATTATTTGATCATTAGATGCCTCCCTTTTTTCTTTCT
CTGAATACATCAAAATAACTGATTTGTTACTCTTATCGCAATGATATGTA
ATCCTTTTGAAACATTAGATCATCGTTTTAGAAAATGACCTGATACAAGC
CATAAAAATTGGAGATTGGAGATTGGACAAATGAGTAGCTTAGCTATCCG
AGCTAGAAGGaggatttttctttgaaaatacaagaaCAACTCCTGTATTC
TCCAAGGAAAATAAATTGCATACTTTCCAAGAAAAATATCATCTAAATTT
CCATACTTTTCGACACATCAATTGACCAGAATTAATAATGAACAAgctca
aattttctaaatttgctATAAACATAAACCTAGCGATTGTGACGAATCAT
TATGACTTGactctttttattttatattatcaACACCATGTTATGTGtac
aaataaaattattaacaattaattcaaaaaaataaaaatcggttcataaa
ttacaaaaatgatacgtaattaaaataactttcGATCTCTTCTTCCATTT
CAGGAGAATCAATTCACCAACCATGACAAGCTGGTGGAAATATGGGACAA
AGCCCACTACATTGAGGAGGAAAACcgacaaaataaaaagttatcaGCTT
TGTCCAGATTTCGAGTTCGAAAAAGAAATCCTCCCCCAAGGACAATATGT
CTAAATGGTATCCGAAAAACTAGTTCCTTGCCTAAGGAAGCAACTGGTCT
TCTAAAGACTTGGCTCATAAATCACAAAAGTGATCCATATCCAAGCGTAC
TTGAGAAACAGCAGCTGGCAAATCTATCTGGCTTGACCATCCCTCAGGTG
AAAACGTGGTTTGCCAATGCACGTCGTCGCTCAAAAACCAATTCCGAAAT
GAAGATGAAACGATGTGAAGAGGGCTTCTCGAATTCCTTGAAACCCTCAT
TTTGTAAGTATTCAAGCTCGTAGGACTTCTTTTTCTATGGTTTTCCATGC
TTCATTAGCAAGACCAGAAGTGCTCAGTGCTATCGCAGCATGTTCAAATG
GCCTATGTTCTGTTCGCTGTTCTGTCCGTTCTTCTTTAAGGAGTGAATTC
TTGTTATTGTTTCTGCTAAAAAACGCAATAAAGATGACGAAAAATGTTTA
TAGAACTGCGGTTGAAAAACTCGAAATTGATCAGACAGGATCAACTATTg
ataaaacataattttttagcaattttttttatcttatatCCTGTTTCAAA
CCTA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00012402-exon-sc0000144-1491911889:225455..227908 | TCONS_00012402-exon-sc0000144-1491911889:225455..227908 | Clytia hemisphaerica | exon |
| TCONS_00012402-exon-sc0000144-1510915933:225455..227908 | TCONS_00012402-exon-sc0000144-1510915933:225455..227908 | Clytia hemisphaerica | exon |
| TCONS_00012402-exon-sc0000144-1575043694:225455..227908 | TCONS_00012402-exon-sc0000144-1575043694:225455..227908 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000144 | supercontig | sc0000144:225455..227908 + |
Blast
BLAST of TCONS_00012402 vs. Swiss-Prot (Human)
Match: SIX1 (Homeobox protein SIX1 OS=Homo sapiens GN=SIX1 PE=1 SV=1) HSP 1 Score: 89.3521 bits (220), Expect = 2.984e-19 Identity = 50/125 (40.00%), Postives = 76/125 (60.80%), Query Frame = 2
Query: 1724 NNFRSLLPFQE-NQFT--NHDKLVEIWDKAHYIEEENRQNKKLSALSRFRVRKRNPPPRTICLNGIRKTSSLPKEATGLLKTWLINHKSDPYPSVLEKQQLANLSGLTIPQVKTWFANARRRSKT 2089
NFR L E +QF+ NH KL ++W KAHY+E E + + L A+ ++RVR++ P PRTI +G + +++ G+L+ W + +PYPS EK++LA +GLT QV WF N R+R +
Sbjct: 61 GNFRELYKILESHQFSPHNHPKLQQLWLKAHYVEAEKLRGRPLGAVGKYRVRRKFPLPRTIW-DGEETSYCFKEKSRGVLREWYAH---NPYPSPREKRELAEATGLTTTQVSNWFKNRRQRDRA 181
The following BLAST results are available for this feature:
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