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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00012408 ID=TCONS_00012408|Name=TCONS_00012408|organism=Clytia hemisphaerica|type=transcript|length=3461bp
ATAATGTTGCGGTTTTTCTAAAATCGTCCACCGTCGAATCTTATTGCAAC
AATATGTCATTATTTATAGAGTTTTGGGTATgtatattttaatatttatt
tttttcttattttttcttccctAATTTAGAATTATTTTCTTCATCCCAAG
ATATTTCTGTCTTTTACCTTCTGGATCTAGCGGGCTTGAGACATCGGTCA
AGGCACTTCACAATTTGACTATAATTCACTACTTATTGAATTATTCCAAC
CAGCTTTTCCGTGACTTCGATCAAACTTCGATCAATAATAAAAAACAGTA
GAACGAAAACAATTCAACATGGCGGAAGTTGAGCAACTCAATTTATCAAA
CAGTAAGAATGCAAACAAGAAGAGCCCacgaaacaacaacaacaacaaca
gtgaGAAGAAACCAAAAACTCAACGATCAACCTCAAAATCAGCCTCCACT
ACACCACGAACCACTCCTCGTGGTGACGATTTACCCCAAGTGACATGCGC
AAGAACGCTGGTCCCTCTCAAAGTAGAaggcgatgacgtcatcaaaggtG
ATATCCATTCTTACAGGACTATCAAAGTTCTCCGAGAAGATCGCAAAGAC
TTGTTGAAAAAGCTTGCAGCATTGGACGAACGCGTTGAATCTATGTTGCG
AATGAAGGGTATCTACCAACGTTTTTGTATGGCAATGCAGAATTTTTCAA
CAGCTATTTTCAAGCTTGACCGTAACAACCAAGGTGTTCCTTATGTCAAC
AATGTCAAAcatctggtcagtaaaatgcaCGAGGAGTTTAACACTGAAGA
AGTGAAATCGGAAAttgagaaaatgaaagaacaacAGGTTCCCTTCTTGG
ATGACTTACTTGgacaatttgaaaatttccagaAACTTTGTGAAAGCATC
ATTGTGACTCACATTCATTATCACGTgacctttttggaagatttccATTT
AGTTGCTGGAAAGATTAGAGGCATGATGAAGACCATTATCACACTTATGT
ATGACGACGAAAGTACATCTAAAGACGATGATGATAATATCATTAAAGAT
CAAGATATCCAAGAAGCTGCCATCAATGATGAGGACGCAAACGAGGAAGA
AACCAAAGAAGAGTCTAACAACAACAAATCCAACAACAATGAATTGGTCT
CTGGTAATAACAAGAACACCTTGGTCATCTCCAATGGTCAACATTTACCA
TCTGTCACCAACACTGATGAACAAGAAGAAAAACCACCACAAGATCCATC
CTCAACACCTCAAGAACTTCACCAGCTCCGTAAAGTCTTCAGTAATATCA
ACGACCTTTTAAGTCGCATCCAGCGTCTATCTCTCGGCAACCCAAGAATC
CAATCCATGAAAGACGCTTCCTTATCCATTGCAGAGGTTTTGATTGATGC
TGGGCCATTGGTTAAGCACTGGCAAACACAAAACATTCCCTGTATCGACT
CTATTGAGAATTTCATTACCAAGATGCTGAAAGTGGCCACTATCCGTCGA
CCTTCCGAAAAACATATCGAACAAATGAAGATGTTATTAGGAGTCTGGGA
CGGGCGTGTCTTAATTGTAGCCAAATACATGGCCATCCAGAATTAACTTT
AAACTATACATGCGTTGATAATTGAAACAAGCATGATGCTCAAATTAAAA
CTGAAAACATTTTCACTTGAatcttgaatttattttttaaattttaaccg
AATAGAGCATAGAACTTTCTGGTAAATCACAGACGATTCTAATCCTAAAT
tgtttggattcatgaaagcgGTAAATTAACTTCAATATTGAATATTCAGT
agtttaacattttttttacttgtgcATGTAATTATTTTAATTGGTTCTTT
TTTGAACAGGGAAAACTCGAATTTTTCAGAACTTCAATAATATAGCACTC
AACCCTTATCctcaaaaatacatttaaacTTTTAGAAATGCTTCAAATAT
AAAACTGCCGTTCGCCAGATGGAGATAATGTGCGTCCACTTGCTAAGCGA
ACCGCAtagttatctggcacccagatgcagaCATTTATATTTGACACACT
GAAGGTCGTgaacattttcaacatttggaAGTTTCAAATTACGGGGTTTC
GCCACACCgccgtcaaggattttgcagtggGGACCCTCGTAAGCCCAACC
TAAATATTTATAGGCTTACGCGTaagggtagttgaacccgactggggatg
cggTCCGATAGAAAATTGGCCctgctccctttagagcttatTTAGCGAGG
GGGGCCgcccgccaatccgccatcggaatatgaGATAACTTGATAACTAG
TGAACTCTATAGTGCAACATTGGGAATCGAACAAGGGGCTCTGCAAAGAA
GGCCATCCATTACCTTGCTTGAAAGCGAGATAATTTgatcaagctgaaaa
atcaacTAATATAGGTTAAATTTCTTTCTTGAAAGCTACTATAACTTCAC
ATAGAAGAAGATTATTACGATATTATTAAAGCACAATTTATATTATATAT
GCAAACCCAGAAAAAGTAATATAAAATCACATAACATCAAACTGAAATTA
GTTTTTATAAATGGAACCTTTAAATTTTTCAGGTATTGAGATGAAGATCG
CAAAGAGGTTGAAAACCGTCCataactgaaaattatttttgattttgact
tttatcaaatcaaagTATATGCCGTAAACTCAGAAAGTTTGTCGCCCATg
acctttttcattttcaatgaaccGTCATGTTCCAGCCAAGGCCAGATCAG
TGCCGGGCCGTGAAAGTCAGGTATTACTTGAATTCTCGTCACAAAATGTA
ATGAATAATTATctaaattagaaaaataatcATAATAAATTTACTTTCTA
TTTAAATTAAAAgtcactttaaaattttgggcAACCTTTTTCTTCTCTCA
GTAAAGTAATTTCATACAACATATATTGGTTTTCTGCTTGTATCTTTTCG
ATAAGCATGCGTAGTTGCAagttttctttctcataatgcGCTTGCTTGTT
CAGTGTCTCTAATTCCTTACGTCGTCGGTCTTCACGTGACTTGCGTGCGG
CCACGTTGTTCTTAATTCGTTTCTGCCAATAATCTTCCGTCTTATTATCT
TCATCAACGAATTTACGCGAGTTTTTCTTTCCCAACGGTTTCGGGTTGTA
TTTATAATGTCGATTATTGTGTGATTTTCGATCTCGCATCATTAATTTGA
AATCGTAACTGCTGTTTACGTCGTAATTTTGTCCATCGTAAGGTTCAGTT
TTCGTAACTACGTTGCCGGCGCTGCAAATGTCTTTTTCGTTTCTTTGCTC
GCTactcatttttagtttttggaATTCTTATATTTTCTGATGATCTTCCG
TTATCAGTTCCAGCCAAGTTTACTTGCTTCAACTTTACTCAATTTTCAAC
ATCTCAAAGCAtcctaaaactcaaaaacaacgttgcatccaatttttttt
gcgCTGGCCAA Run BLAST on NCBI transcript from alignment at sc0000144:269398..275478+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00012408 ID=TCONS_00012408|Name=TCONS_00012408|organism=Clytia hemisphaerica|type=transcript|length=6081bp|location=Sequence derived from alignment at sc0000144:269398..275478+ (Clytia hemisphaerica)
ATAATGTTGCGGTTTTTCTAAAATCGTCCACCGTCGAATCTTATTGCAAC
AATATGTCATTATTTATAGAGTTTTGGGTATgtatattttaatatttatt
tttttcttattttttcttccctAATTTAGAATTATTTTCTTCATCCCAAG
ATATTTCTGTCTTTTACCTTCTGGATCTAGCGGGCTTGAGACATCGGTCA
AGGCACTTCACAATTTGACTATAATTCACTACTTATTGAATTATTCCAAC
CAGCTTTTCCGTGACTTCGATCAAACTTCGATCAATAATAAAAAACAGTA
GAACGAAAACAATTCAACATGGCGGAAGTTGAGCAACTCAATTTATCAAA
CAGTAAGAATGCAAACAAGAAGAGCCCacgaaacaacaacaacaacaaca
gtgaGAAGAAACCAAAAACTCAACGATCAACCTCAAAATCAGGTATACTT
ATTATTATCACTTTTAAGTACAGAGCGTTTTTAAACGTTTCCACGTGTCA
GCAAATAACGACAATGGTTTTGAAGCAATTTTAACTTTTCACGGATAAGA
TTTGAAGTATCAgccaaaaactttaattttcattcgAAGATTGTAGAATa
gtgatttttcagtttcataatttttatttcaaacatttaattagaaaatt
ttgaaaaaagttgtgatttttggGTCAAGACTCATGTCGGAAAATGTCGA
CATCGACACGGAAAGGGTTGTAGTCAAATTCATCGTTTAGATCTAACCTT
TGTTCTTGTATTCAACTCTTCTTTCCGTTCGCCCGTTCTTACTTTTGCAG
ctttttctcgggatcggctctttagtgagtttatgtattcgagataaatc
gagggggacggtataaagcaaagttgacatgtttCCAAAATCACAGTCCA
CTTTGCTTGACGACagtaaaaaaacaccaaaataccgtcgtctgttaaGG
Tgggcaaaggcgatatagagctgtacatcaactatcgactttgttttgtg
tCATTTCTCTTACCGTCGCCGTCGGGTATTAGCTTATTCTAAGACGGAAA
ATGGTCATGCCTTAAATGTGACGGAGGCCGGTTTTCTATTCTTCTACCCT
ACTGTTTAATTAAATTTGTCCATTGGTttagaaaaattactttcattaTA
GCCTCCACTACACCACGAACCACTCCTCGTGGTGACGATTTACCCCAAGT
GACATGCGCAAGAACGCTGGTCCCTCTCAAAGTAGAaggcgatgacgtca
tcaaaggtGATATCCATTCTTACAGGACTATCAAAGTTCTCCGAGAAGAT
CGCAAAGACTTGTTGAAAAAGCTTGCAGCATTGGACGAACGCGTTGAATC
TATGTTGCGAATGAAGGGTATCTACCAACGTTTTTGTATGGCAATGCAGA
ATTTTTCAACAGCTATTTTCAAGCTTGACCGTAACAACCAAGGTGTTCCT
TATGTCAACAATGTCAAAcatctggtcagtaaaatgcaCGAGGAGTTTAA
CACTGAAGAAGTGAAATCGGAAAttgagaaaatgaaagaacaacAGGTTC
CCTTCTTGGATGACTTACTTGgacaatttgaaaatttccagaAACTTTGT
GAAAGCATCATTGTGACTCACATTCATTATCACGTgacctttttggaaga
tttccATTTAGTTGCTGGAAAGATTAGAGGTAGAACGCCATTTTTATTAG
AGGGGATTTCGAGGGAATCGAACTTTTATTCATTCCACTAATGTCtcaaa
ctttgaagaaaatgtaaaaaaactgTTTTCGTCTCTCGTCGGAGAAACTG
ATATTTTAACTACTTTAACCTATATATTTTTTTNAACGATCAACCTCAAA
ATCAGGTATACTTATAATTATCACTTTTAAGTACAGAGCGTTTTTAAACG
TTTCCACGTGTCAGCAAATAACGACAATGGTTTTGAAGCAATTTTAACTT
TTCACGGATAAGATTTGAAGTATCAgccaaaaactttaattttcattcgA
AGATTGTAGAATTGTGATTATTATCGACATAGGCACGAAAAGGGTTGTGG
TCAAATTCATCGTTTAGATCTAACCTTTGTTCTTGTATTCAACTCTCCGT
TTGTTCGCCCGTTCTTACGTTTCCAGctttttctcgggatcggctcatta
gcgagtttatgtatttgagataaatcgagggggacggtataaaggaaagt
tgacatgtctccgaaatcaccgtccactttgctcgacgacggtaaaaaca
ccaaaataccgtcgtctgtttaggttagcaaaggcgatatagagccgtac
attaactatcgactttgttttgtgtCATTTTTCTTACCGTCGTCTTCGAT
ATCATTCGATACATAAACCGTCGGGTATTAGCTTATCCTAAGACGGAAAA
TGGTCATGCcttaaatgtgacggagcctggtTTTCTATTCTTCTACCCTA
CTGTTTAATTAAATTTGTCCATTGGTttagaaaaattactttcattaTAG
CCTCCACTACACCACGAACCACTCCTCGGGGTGACGATGTACCCCAAATG
ACATGCGCCAGAACGCTGGTCCCTCTCAAAGTAGAaggcgatgacgtcat
caaaggtGATATCCATTCTTACAGAACTATCAAAGTTCTCCGAGAAGATC
GCAAAGACTTGCTGAAAAAGCTTGCAGCATTGGACGAACGCGTTGAATCT
ATGTTGCGAATGAAGGGTATCTACCAACGTTTTTGTATGGCAATGCAGAA
TTTTTCAACAGCTATTTTCAAGCTTGACCGTAACAACCAAGGTGTTCCTT
ATGTCAACAATGTCAAAcatctggtcagtaaaatgcaCGAGGAGTTTAAC
ACTGAAGAAGTGAAATCGGAAAttgagaaaatgaaagaacaacAGGTTCC
CTTCTTGGATGACTTACTTGGACAATTTGGAAATTTCCAGAAACTTTGTG
AAAGCATCATTGTGACTCACATTCATTATCACGTgacctttttggaagat
ttccATTTAGTTGCTGGAAAGATTAGAGGTAGAACGCCATTTTTATTAGA
GGGGATTTCGAGGGAATCGAACTTTTATTCATTCCACTAATGTCtcaaac
tttgaagaaaatgtaaaaaaactgTTATCGTCTCTCGTCGGAGAAACTGA
TATTTTAACTACTTTAacctatatatttttttatttgcgAATGTATATTC
ATTGTTTGGTTTTTCCCCCAGGATAAAGTAGTAAAATCTTGCAAAATGAG
ATAAATAGCCTAGCTATTAAGCTACGGTCATCAGAGGCCTGTTACCACTT
CTTGTAGTAATTATGTAAACAATCTTTTTGACAGGCATGATGAAGACCAT
TATCACACTTATGTATGACGACGAAAGTACATCTAAAGACGATGATGATA
ATATCATTAAAGATCAAGATATCCAAGAAGCTGCCATCAATGTGAgcatt
ttttctgattcttatTTTTGGTCATTGTCTGTGTTCAAACATATATGCTG
GATAAGAGGGCAACTGTCTTCATTTAGGCATATATTAATGTGTCTAGTTT
AGTAGTGGAGCACGtgaaagaaaattcaaacttGAGGAGACCAGAGTCAA
AATAGTTTTCTTTCTACAACAAAATCAAGGGATCTGACCCGGTCTTCCCG
CGCTTCAAGGGTCGAAAGGTTGATTTGTTTCTCCTTGTATTCTCTAGGAT
GAGGACGCAAACGAGGAAGAAACCAAAGAAGAGTCTAACAACAACAAATC
CAACAACAATGAATTGGTCTCTGGTAATAACAAGAACACCTTGGTCATCT
CCAATGGTCAACATTTACCATCTGTCACCAACACTGATGAACAAGAAGAA
AAACCACCACAAGATCCATCCTCAACACCTCAAGAACTTCACCAGCTCCG
TAAAGTCTTCAGTAATATCAACGACCTTTTAAGTCGCATCCAGCGTCTAT
CTCTCGGCAACCCAAGAATCCAATCCATGAAAGACGCTTCCTTATCCATT
GCAGAGGTTTTGATTGATGCTGGGCCATTGGTTAAGCACTGGCAAACACA
AAACATTCCCTGTATCGACTCTATTGAGAATTTCATTACCAAGATGCTGA
AAGTGGCCACTATCCGTCGACCTTCCGAAAAACATATCGAACAAATGAAG
ATGTTATTAGGAGTCTGGGACGGGCGTGTCTTAATTGTAGCCAAATACAT
GGCCATCCAGAATTAACTTTAAACTATACATGCGTTGATAATTGAAACAA
GCATGATGCTCAAATTAAAACTGAAAACATTTTCACTTGAatcttgaatt
tattttttaaattttaaccgAATAGAGCATAGAACTTTCTGGTAAATCAC
AGACGATTCTAATCCTAAATtgtttggattcatgaaagcgGTAAATTAAC
TTCAATATTGAATATTCAGTagtttaacattttttttacttgtgcATGTA
ATTATTTTAATTGGTTCTTTTTTGAACAGGGAAAACTCGAATTTTTCAGA
ACTTCAATAATATAGCACTCAACCCTTATCctcaaaaatacatttaaacT
TTTAGAAATGCTTCAAATATAAAACTGCCGTTCGCCAGATGGAGATAATG
TGCGTCCACTTGCTAAGCGAACCGCAtagttatctggcacccagatgcag
aCATTTATATTTGACACACTGAAGGTCGTgaacattttcaacatttggaA
GTTTCAAATTACGGGGTTTCGCCACACCgccgtcaaggattttgcagtgg
GGACCCTCGTAAGCCCAACCTAAATATTTATAGGCTTACGCGTaagggta
gttgaacccgactggggatgcggTCCGATAGAAAATTGGCCctgctccct
ttagagcttatTTAGCGAGGGGGGCCgcccgccaatccgccatcggaata
tgaGATAACTTGATAACTAGTGAACTCTATAGTGCAACATTGGGAATCGA
ACAAGGGGCTCTGCAAAGAAGGCCATCCATTACCTTGCTTGAAAGCGAGA
TAATTTgatcaagctgaaaaatcaacTAATATAGGTTAAATTTCTTTCTT
GAAAGCTACTATAACTTCACATAGAAGAAGATTATTACGATATTATTAAA
GCACAATTTATATTATATATGCAAACCCAGAAAAAGTAATATAAAATCAC
ATAACATCAAACTGAAATTAGTTTTTATAAATGGAACCTTTAAATTTTTC
AGGTATTGAGATGAAGATCGCAAAGAGGTTGAAAACCGTCCataactgaa
aattatttttgattttgacttttatcaaatcaaagTATATGCCGTAAACT
CAGAAAGTTTGTCGCCCATgacctttttcattttcaatgaaccGTCATGT
TCCAGCCAAGGCCAGATCAGTGCCGGGCCGTGAAAGTCAGGTATTACTTG
AATTCTCGTCACAAAATGTAATGAATAATTATctaaattagaaaaataat
cATAATAAATTTACTTTCTATTTAAATTAAAAgtcactttaaaattttgg
gcAACCTTTTTCTTCTCTCAGTAAAGTAATTTCATACAACATATATTGGT
TTTCTGCTTGTATCTTTTCGATAAGCATGCGTAGTTGCAagttttctttc
tcataatgcGCTTGCTTGTTCAGTGTCTCTAATTCCTTACGTCGTCGGTC
TTCACGTGACTTGCGTGCGGCCACGTTGTTCTTAATTCGTTTCTGCCAAT
AATCTTCCGTCTTATTATCTTCATCAACGAATTTACGCGAGTTTTTCTTT
CCCAACGGTTTCGGGTTGTATTTATAATGTCGATTATTGTGTGATTTTCG
ATCTCGCATCATTAATTTGAAATCGTAACTGCTGTTTACGTCGTAATTTT
GTCCATCGTAAGGTTCAGTTTTCGTAACTACGTTGCCGGCGCTGCAAATG
TCTTTTTCGTTTCTTTGCTCGCTactcatttttagtttttggaATTCTTA
TATTTTCTGATGATCTTCCGTTATCAGTTCCAGCCAAGTTTACTTGCTTC
AACTTTACTCAATTTTCAACATCTCAAAGCAtcctaaaactcaaaaacaa
cgttgcatccaattttttttgcgCTGGCCAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00012408-exon-sc0000144-1491911889:269398..269839 | TCONS_00012408-exon-sc0000144-1491911889:269398..269839 | Clytia hemisphaerica | exon |
| TCONS_00012408-exon-sc0000144-1510915933:269398..269839 | TCONS_00012408-exon-sc0000144-1510915933:269398..269839 | Clytia hemisphaerica | exon |
| TCONS_00012408-exon-sc0000144-1575043694:269398..269839 | TCONS_00012408-exon-sc0000144-1575043694:269398..269839 | Clytia hemisphaerica | exon |
| TCONS_00012408-exon-sc0000144-1491911889:270549..271076 | TCONS_00012408-exon-sc0000144-1491911889:270549..271076 | Clytia hemisphaerica | exon |
| TCONS_00012408-exon-sc0000144-1510915933:270549..271076 | TCONS_00012408-exon-sc0000144-1510915933:270549..271076 | Clytia hemisphaerica | exon |
| TCONS_00012408-exon-sc0000144-1575043694:270549..271076 | TCONS_00012408-exon-sc0000144-1575043694:270549..271076 | Clytia hemisphaerica | exon |
| TCONS_00012408-exon-sc0000144-1491911889:272732..272838 | TCONS_00012408-exon-sc0000144-1491911889:272732..272838 | Clytia hemisphaerica | exon |
| TCONS_00012408-exon-sc0000144-1510915933:272732..272838 | TCONS_00012408-exon-sc0000144-1510915933:272732..272838 | Clytia hemisphaerica | exon |
| TCONS_00012408-exon-sc0000144-1575043694:272732..272838 | TCONS_00012408-exon-sc0000144-1575043694:272732..272838 | Clytia hemisphaerica | exon |
| TCONS_00012408-exon-sc0000144-1491911889:273095..275478 | TCONS_00012408-exon-sc0000144-1491911889:273095..275478 | Clytia hemisphaerica | exon |
| TCONS_00012408-exon-sc0000144-1510915933:273095..275478 | TCONS_00012408-exon-sc0000144-1510915933:273095..275478 | Clytia hemisphaerica | exon |
| TCONS_00012408-exon-sc0000144-1575043694:273095..275478 | TCONS_00012408-exon-sc0000144-1575043694:273095..275478 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000144 | supercontig | sc0000144:269398..275478 + |
Blast
The following BLAST results are available for this feature:
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