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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00012414 ID=TCONS_00012414|Name=TCONS_00012414|organism=Clytia hemisphaerica|type=transcript|length=2352bpRun BLAST on NCBI protein sequence of TCONS_00012414-protein >TCONS_00012414-protein ID=TCONS_00012414-protein|Name=TCONS_00012414-protein|organism=Clytia hemisphaerica|type=polypeptide|length=495bp MALFLRKHTGTPFKHAQVLSRSFAVRGVEMPSTDFQPAEFKGMPYDEARARun BLAST on NCBI transcript from alignment at sc0000144:294574..306117+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00012414 ID=TCONS_00012414|Name=TCONS_00012414|organism=Clytia hemisphaerica|type=transcript|length=11544bp|location=Sequence derived from alignment at sc0000144:294574..306117+ (Clytia hemisphaerica) Coding sequence (CDS) from alignment at sc0000144:294574..306117+ >TCONS_00012414 ID=TCONS_00012414|Name=TCONS_00012414|organism=Clytia hemisphaerica|type=CDS|length=25296bp|location=Sequence derived from alignment at sc0000144:294574..306117+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00012414 vs. Swiss-Prot (Human)
Match: AGT2 (Alanine--glyoxylate aminotransferase 2, mitochondrial OS=Homo sapiens GN=AGXT2 PE=1 SV=1) HSP 1 Score: 499.59 bits (1285), Expect = 3.790e-168 Identity = 237/467 (50.75%), Postives = 305/467 (65.31%), Query Frame = 1
Query: 361 MPSTDFQPAEFKGMPYDEARAAHAKNLFPHVSERMLLYKRPVYLTQGHMQWLWDSEGKRYLDLFAGIATCGVGHCHPKITESIQDQASKLVHCSNLYINAKQAEYAEKLLTKLPEKYNRVYFVNSGSEANDFAMTMMRVYTGSWDIIGLRNAYHGASPTTLGITNMGQYKFPTPQNFGCHTIPNPDVYKGIWGGKNCRDSPVQADRDCDCAEGVCEATDLYLGQLEDVLTNVTPPKVAGFFGEPIQGVGGSVQYPRDFLQKTYEKIHARGGLCVADEVQTGFGRTGSHYWGFQGSGLNPDIIVCAKTIANGLPMACVITTKEIADSMNVALP-FNTYSSNPVSCAAAITALDVIDEEGLQENCQRVGTYCLEELSKIRDDYEIVGDVRGKGLMIGIEMVADKKTRAPLQPERVGDIIERTKDYGVLFGKGGRFGQVLRIKPPMNVTKEDIDFGLAVLRQSIEEHLAQ 1758
MP DF P ++ + Y+ H ++L P V+ +++P+ L QGHM+WL+D+EG RYLD F+GI T VGHCHPK+ Q Q +L H S ++ + EYAEKL LPE ++ VNSGSEAN+ AM M R ++ + DII R AYHG SP TLG+TN+G YK P GC PDV++G WGG +CRDSPVQ R C CA C+A D Y+ Q +D L+ +AGFF EPIQGV G VQYP+ FL++ +E + ARGG+C+ADEVQTGFGR GSH+WGFQ + PDI+ AK I NG PMA VITT EIA S+ L FNT+ NP++CA L+VI EE LQEN Q VGTY L + +K+RD++EIVGDVRGKGLMIGIEMV DK + PL E V I E K G+L G+G F Q RI P M +TK ++DF + V R ++ +H+ +
Sbjct: 48 MPPCDFMPERYQSLGYNRVLEIHKEHLSPVVTA---YFQKPLLLHQGHMEWLFDAEGSRYLDFFSGIVTVSVGHCHPKVNAVAQKQLGRLWHTSTVFFHPPMHEYAEKLAALLPEPLKVIFLVNSGSEANELAMLMARAHSNNIDIISFRGAYHGCSPYTLGLTNVGTYKMELPGGTGCQPTMCPDVFRGPWGGSHCRDSPVQTIRKCSCAPDCCQAKDQYIEQFKDTLSTSVAKSIAGFFAEPIQGVNGVVQYPKGFLKEAFELVRARGGVCIADEVQTGFGRLGSHFWGFQTHDVLPDIVTMAKGIGNGFPMAAVITTPEIAKSLAKCLQHFNTFGGNPMACAIGSAVLEVIKEENLQENSQEVGTYMLLKFAKLRDEFEIVGDVRGKGLMIGIEMVQDKISCRPLPREEVNQIHEDCKHMGLLVGRGSIFSQTFRIAPSMCITKPEVDFAVEVFRSALTQHMER 511 The following BLAST results are available for this feature:
BLAST of TCONS_00012414 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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