TCONS_00012420 (transcript) - C. hemisphaerica

Overview


Name	TCONS_00012420
Unique Name	TCONS_00012420
Type	transcript
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	2472

Sequence

The following sequences are available for this feature:

transcript sequence
transcript from alignment at sc0000144:295699..306117+

transcript sequence

>TCONS_00012420 ID=TCONS_00012420|Name=TCONS_00012420|organism=Clytia hemisphaerica|type=transcript|length=2472bp
CAAAAAAAGATTGCCGGATCAAAAACAATACCGCGTAGGAGTGCTCAAAC
CCTGTTGGGAATACCATATAATTGCTTGGAATGTACTCCGTGGCGGAGAT
GTTTTGATGTTAGGAGACATCTAACTCGAAGGTTATCAATGCCATCAATA
ATTCATCTCGAGAAAAGAAGGGGTTTAAGACAGCAAGCTTGCTATTATAC
TTTTTACTAGCTGATATCGGATATCTCAAAGTTGAgggaaaacaaaaaga
ttttgcAATACTttccgaaaatcttttttgagatCTGCTTACACACTCTT
GTTTAAGGTAACATACTTTCGGACGACACGACGTTGTGCAGACGACAGCT
AGACAGAACTTTCACCGATATTTGACGACCAAATACAACAACCATGGCTC
TTTTCCTCAGAAAACACACAGGAACTCCTTTCAAACATGCACAAGTATTA
TCCCGATCATTTGCAGTTCGTGGTGTTGAAATGCCTTCAACTGATTTCCA
ACCGGCTGAATTCAAGGGAATGCCATACGATGAAGCACGTGCTGCACACG
CCAAAAACCTTTTCCCTCATGTCTCCGAACGTATGTTGTTATACAAAAGA
CCTGTCTATCTCACTCAGGGTCATATGCAATGGTTGTGGGATAGTGAAGG
CAAACGATATTTAGATTTATTTGCTGGCATTGCTACTTGTGGTGTTGGAC
ACTGTCACCCGAAAATTACAGAATCGATTCAAGATCAAGCATCAAAATTG
GTGCATTGCTCAAACTTGTACATCAATGCTAAACAAGCGGAATATGCTGA
AAAATTGTTGACAAAATTGCCCGAAAAATATAACCGTGTATACTTTGTGA
ACAGTGGATCAGAAGCGAATGATTTCGCTATGACCATGATGAGAGTTTAC
ACTGGAAGCTGGGATATCATCGGATTGAGAAACGCTTACCACGGAGCCAG
TCCCACCACTCTTGGCATCACCAACATGGGTCAATACAAATTCCCAACTC
CACAAAACTTTGGTTGTCACACTattcCAAACCCAGATGTTTACAAAGGA
ATTTGGGGCGGAAAGAATTGCCGCGATTCTCCCGTTCAAGCTGACAGAGA
TTGTGATTGTGCTGAAGGAGTATGTGAGGCCACAGACCTTTACCTCGGTC
AATTGGAAGATGTGTTGACCAATGTCACACCTCCAAAAGTTGCCGGATTC
TTTGGTGAACCCATCCAGGGTGTCGGTGGTAGCGTTCAATACCCACGTGA
CTTTTTACAAAAGACCTACGAGAAGATTCACGCACGTGGTGGACTTTGTG
TGGCTGATGAGGTTCAAACAGGTTTCGGACGTACTGGTTCACATTATTGG
GGATTCCAAGGTTCTGGACTCAACCCTGACATCATCGTGTGCGCCAAGAC
CATCGCTAACGGATTACCAATGGCTTGCGTTAtcacaacaaaagaaattg
cTGACTCAATGAACGTTGCTCTTCCATTCAACACCTACTCCTCAAATCCA
GTCTCTTGCGCCGCTGCTATCACCGCTCTCGATGTTATCGACGAAGAAGG
TTTACAAGAGAACTGTCAACGTGTTGGAACATATTGTTTGGAAGAACTAT
CGAAGATCCGTGATGATTACGAGATTGTCGGGGATGTCCGTGGTAAAGGA
TTGATGATCGGTATCGAAATGGTCGCCGATAAAAAGACGAGAGCACCATT
GCAACCAGAGAGAGTTGGAGATATCATCGAACGAACGAAAGATTACGGAG
TCTTGTTCGGTAAAGGTGGACGATTTGGACAGGTTCTTCGTATCAAACCA
CCAATGAACGTCACTAAAGAAGACATTGATTTCGGACTTGCTGTTCTCAG
ACAATCTATCGAAGAACATCTCGCTCAATAGAAGGCGATGTTGTGAAACA
TACCAACGTTGAACATACAATATCAATGCAGGGTTCACAAGAAGACGAGA
CTATTGTGTATTCTGGTTAGATATACATCGTCCCAGTAATTTTCGATGGA
GCCTTGTCCTTATTGAAGAGCGTCATTGAAAATTCATGGACCGTACTGCT
GTTCCACAGTggcaaaaaataaacaaagggAAGCATTATTCAGCACAGTT
AAgtttataattttaaatcacCACGCCATTCCAAAAAtactcatttaaaa
aaatatacgcTCAAGGAACTAATTTGATATTCACACCTTACGTCATTAAT
GAGTTTTAGCAAAGATTGACAAAAGGGGTTCTCTAAGATGTCTATAGAAT
TAATTCTTCCCTCGCTATTTCTTCACTTGAGAATAAATTTCACATAAGGg
taattttcatcaattttctaTATAATGCCGAAATAGGAGAtctaattatt
tcaaaatatacaaagatttatataattaattttataatttttgtcgTTGT
AAATATAATGAATACTCATTGACACAAAGTTCAAAACgaattgtttttct
tctttggtTTTCCTGAATGGCA

Run BLAST on NCBI

transcript from alignment at sc0000144:295699..306117+

Legend: exon

Hold the cursor over a type above to highlight its positions in the sequence below.

>TCONS_00012420 ID=TCONS_00012420|Name=TCONS_00012420|organism=Clytia hemisphaerica|type=transcript|length=10419bp|location=Sequence derived from alignment at sc0000144:295699..306117+ (Clytia hemisphaerica)
CAAAAAAAGATTGCCGGATCAAAAACAATACCGCGTAGGAGTGCTCAAAC
CCTGTTGGGAATACCATATAATTGCTTGGAATGTACTCCGTGGCGGAGAT
GTTTTGATGTTAGGAGACATCTAACTCGAAGGTTATCAATGCCATCAATA
ATTCATCTCGAGAAAAGAAGGGGTTTAAGACAGCAAGCTTGCTATTATAC
TTTTTACTAGCTGATATCGGATATCTCAAAGTTGAgggaaaacaaaaaga
ttttgcAATACTttccgaaaatcttttttgagatCTGCTTACACACTCTT
GTTTAAGGTAACATACTTTCGGACGACACGACGTTGTGCAGACGACAGCT
AGACAGAACTTTCACCGATATTTGACGACCAAATACAACAACCATGGCTC
TTTTCCTCAGAAAACACACAGGTATATTCCGCTTTTCACTATTTTAGTTC
GAGAAAGGTTGGTGGGATGGGAATATTTGGGTTTTAAGCCAGGCTGgctc
ttttgaaatatttctgtTGCTTTGAGTTTTGATGTAATACTGTACAGTTT
TGAGTTGTAGCTGCATATGGTAATACACTTAAAATTTTCCttcttctaaa
attttcataGGAACTCCTTTCAAACATGCACAAGTATTATCCCGATCATT
TGCAGTTCGTGGTGTTGAAATGCCTTCAACTGATTTCCAACCGGCTGAAT
TCAAGGTATCATTTTACTGTATGTTTGTCTTCAATAAAGGTTTCTGTCTT
GGTAGATTCGAAGTGTATGTTATATTTGCAAtagtttgaaaatttgtgtC
TAGTAGGTCTCGCTTGTGTTCTTTCAACcgtatttttcttcaaaactttt
gTAAATTTCTGTTATATCATTGCGAACATGAAGTAATTAGATAGACGGGA
GTAATGGAGCTATGGAAAAGCAAATTTTGCTGAGTCATTATGTCAAatga
tttgcataatttttcatacattcaacttattatttttttgttatcaACTC
AATTATTTTCTTTACTGCTAAATCACAAAACGCTTATCTAATCATGGTAT
CTTTTCACGGCTTTCACGGCAAATCCTACTCGTACTATAACAACACAAAA
ACTTCATATCGAAActcaaacatttcaaaattttactagTAGAAAAACAA
AGTGCTGANAATCCTACTCGTACTATAACAACACAAAAACTTCATATCGA
AActcaaacatttcaaaattttactagTAGAAAAACAAAGTGCTGACCGC
AATAGAGAAAACATTCCTAGTTATTTTTTGCTTGACTAATAAGAACTGCT
ATTTACACAAGCAACGATTCCCTTTTTTGGATAATCGAGGATTAAGCAAT
AAAGGAAGGATGGGGCTGGCCTGCATGTGGCAAACGATCTAGGCGGAAAA
TGACCACCATCATACCCTTGACTTTTTACCCTTGACAGTAAATTTGACAA
TTTACTGATTGAAATATTCCAGTCATATGTAATCATTTTGAAGCTTAAAA
ATCATGCGCTCACGATTATTTGTTTCAAAATCATGTAACTATGGTTCTCC
TGGGGACATACACGCTGACGCTCGCTAATTTGGACTTGGACGCACGGCGA
GAATCTTATTTCCTCGAATTACAAAGAGATTCGAATTGTAGAAAGCATTT
TAGAAGGGTTTTTCTTTGCCAGGGACTGCAaataagttcgaataagcgaa
agTCTACTGTActtcaaaaaggttttttcctccagaaaatatgaaataca
TAGATAGGCTGAAGTATTTTTCTAATGAGTATGAAAATCTTACGTCAGCT
GCTGTGTTCAGGTGACCTCCTTAGAAAGGGTCAGCAGAAAATTTCCTCTA
GTAAAAATACTGAGtgtccaattttccattgttcgGTGGGCTATGCAATA
TTTACTTTAAAGACGTGATTGCGAATTTCGAGGAGAAATTTGATATGGGT
CAGAACTCTGTTTGTCAACTGCTTTTAGAAAAGTACATGAAGTTTGTTGA
CAAGTCATATTCATATGCTGATAAGCCAAAATACAAAAAGGAGTACTCGA
GATATCCCGATTAAAACCTTAAGATTACAGATCGCCGATGAGATTGCCAG
AATCTTGAAATTCTTTCTTCAAGGGCAAtgaaatctttttctcaaaactt
tatttttagctCTACTAtattttaccttccaaaaaatTACGATGCAAAGA
ATAATTgtccttgaaaatttgaaatattcctCTTCGTAAAGTTTCATTCA
ATTCTTTATACAATTTTGAACGCTTTTTTAAGTGGTCAATTCAATCCTTG
GTACTGTAGGCTTTAATACTTAACGAATCCCTAATCGAATATGATTCCTT
GAACTATTTCAGGGAATGCCATACGATGAAGCACGTGCTGCACACGCCAA
AAACCTTTTCCCTCATGTCTCCGAACGTATGTTGTTATACAAAAGACCTG
TCTATCTCACTCAGGTAAGCGtgaaataaaatattaatttgtTAGTCTGA
AGGTGACTGGCCCAGCTTCGGGCCTTTCACTAGCATGTCAATGTCCGTGA
TATGCTGTATTTCCCTTTTTCGAAGAAGCGGTGCTTTGttaatttaagtt
tattttgaaaaaaacggcgcCTTGTAACAATCAACGAACAAATATTTGAC
TATTCCTATGTTGCTTCGGCTTCTTGTTATTTGTTGGagagcattttttc
gaatttcgaataTAAACACCTTAAATACCTACCGGATCCGccacaaaaaa
agtttctctctttaaaaccaattttctcgaattctaaaaatttcgaaaga
atcattcctatttcattggaaagaaaaaagataaacttaaattttgatag
tttgtttattaaatttgattctttgaatcaaaaatgttcaattgaataaa
aaagttgctTTCAGAAAGTGCTTGAGAACGTTAAAAATCGGTCTATCAAG
TTAAACAAAGGGAAACCTTtttgtggtgcacccggtagcAATTTCAATAT
AAACTGTCCACCATCCCCGGATTCTTTAAACAGTTGATTCTTGATTTTTA
GGGTCATATGCAATGGTTGTGGGATAGTGAAGGCAAACGATATTTAGATT
TATTTGCTGGCATTGCTACTTGTGGTGTTGGACACTGTCACCCGTAAGTT
AAGAAAATAATATCTTGCTTCTCGAATACGACATTTGGTAGTCCATCTCG
TTCATTTTTTGATAGATGATTCCCCCTATTGGCACGAATTCAAAGCAACG
TTTAACAATAACGTTTACACATTCTTCATTTTACTTCAAAACGCTAGAAA
GGTATCACCGGATCATTAATTCAATGTTGCTACAACTTATAGGTATTTAT
ACATAATTAAGGTCTGGATGGGAAAAATAATCACCCGCTAGGTTCTTGTG
GTCATCTTTATCAGGAAACTGGGCTACAGTAACTAATAACCAGCATCGAC
TATCGAATATTTTGAGTGACTTCAGATTTCTCTTTTAGGAAAATTACAGA
ATCGATTCAAGATCAAGCATCAAAATTGGTGCATTGCTCAAACTTGTACA
TCAATGCTAAACAAGCGGAATATGCTGAAAAATTGTTGACAAAATTGCCC
GAAAAATATAACGTAAGAAAAGCCTTTCTTCTAAGCCTTATCATTAGCTT
TGTAAAAAGGGTATCCCTGTAAGCCGAGAAATTTCATGACAGTCTCCTCT
GTTATTTTGAGCtagattttcaagttttgccTGATTTGGTTTGGATACAA
AAATTCTATCTTTCCAAAAAGGTTGTCTATCATAGTAAATAACAATGACG
GGAGGCCGAAAATTCGGTAGAACATTCAACAATCCAAAATGTTAATGTCT
TTCTACTTATCCCTTAAATATTTTCCCTTTCATTCTACAGCGTGTATACT
TTGTGAACAGTGGATCAGAAGCGAATGATTTCGCTATGACCATGATGAGA
GTTTACACTGGAAGCTGGGATATCATCGGATTGAGGTATGATGTGTAGAT
CTTTATAGAAGAGTTCTTTCAGCTTTGATAAGGTTATGTAACTTACCGTG
AAATCCACCATTATTGAATTTCTCCCAATCAAAAGTTTTTCTACCGGTAT
ATGTGCTATTCGAAATGCATTAAACTCAGAAAACGTGCAAAAGAATACCT
GCACTAAATCAATAGTCATCCATCTCGCTAGATTTAAAATGGTAATGAGT
GACGATAAAGGCTCATCCCATTACTAATATTCTTATGACCTTTAGACTTC
CAATAGGCCCTAATACCCCTCAAACAAGTATTTCTTCATTTCTActctat
ttttgaaatatttccttaTCATTTTCAGAAACGCTTACCACGGAGCCAGT
CCCACCACTCTTGGCATCACCAACATGGGTCAATACAAATTCCCAACTCC
ACAAAACTTTGGTTGTCACACTGTAAGAATCGGCAATGATCATTTTTTCG
CCATCCGAatgctctctctctctctttgcAGTCTGTTGAAAATTTTCGCA
TGCATGCTCCTAACCTCCTAACCTCATCAAAATTATACCTCTGAATCTAA
ATAGACCAACATaatatatttcccttttttcatttcagattcCAAACCCA
GATGTTTACAAAGGAATTTGGGGCGGAAAGAATTGCCGCGATTCTCCCGT
TCAAGTatgaattttaacaaaattaactttaaaatttAACTAAATTTTAC
TGCTACATAGATTCGTTCAAGAAATAACTTTCAATATGCAACAATAAATT
TAgactagccataattttcattaaagtgccaccgcagaataacgatcaaa
taagttgttgaatttggaaagaaatgttactgatagccgatagtctacaa
atattagcaatttgtgtccatctcatagatatcttcttatagagataaga
taaagttatttatctgttttttttgtcatctcNACGATGTGTAGATCTTT
ATAGAAAAGTTCTTTCAGCTTTGATAAGGTTATGTAACTTACCGTGAAAT
CCACCATTATTGAATTTCTCCCAATCAAAAGTTTTTCTACCGGTATATGT
GCTNCAATGGCTTGTTTATGtcatactaaacgctactgtGCTAAACTGCC
ATTTTACTGTAATAGTCAAACGACAAGTCTTAgaaaggataaaaatttct
aatttccgttgctcagagcggttaataactagttgtggtttaaataggga
atttcccaacaaaaaaggaatttcccttaattcgactccctgaggtaata
aaaaaagacatatagaggtttgaaaatgggtaatcaaattaaaaaaaatc
cggaaaagtgtttttaatgatgataaaacaatagaaatacagtcaagcta
agaatgttaccggtacaccatttaaccggaactaaaatactgaNCTCTCT
TTGCAGTCTGTTGAAAAAACCTCCTAACCTCATCAAAATTATACCTCTGA
ATCTAAATAGACCAACATaatatatttcccttttttcatttcagattcCA
AACCCAGATGTTTACAAAGGAATTTGGGGCGGAAAGAATTGCCGCGATTC
TCCCGTTCAAGTatgaattttaacaaaattaactttaaaatttAACTAAA
TTTTACTGCTACATAGATTCGTTCAAGAAATAACTTTCAATATGCAACAA
TAGATTTAGATTAGATTGCCCACCAATGTGGTTCATAATAATCTCTATTA
TTATAATCTACTATTTTTTAGGCTGACAGAGATTGTGATTGTGCTGAAGG
TATTTAATTCTTTTTCTAAACGAGTTCAGAATATTTTGCCATTTCGAGGG
TATTTTAgcgttttgcagaatttaaaaTTCAGGCGAGAATGACATTTCTA
GGCTTTCTACTTTACCTAATgggatatttcgatttgggaggagTATAATG
GCTTCCagactatattctcagcctaggGGGACCATAAAtaagcttttgga
tcctcagaccAGAGTCTTAAGTCTCCTGtttaaactcagagttaaaactg
tACTTTCCAACCCTAAGTTAAGGCACTTAAAACTACTtgcccttttttta
attttgcaagGAAATTCTTTTTGTGCAAAATGTTATAGGCCATAGATAGT
TTTGTGTACATAGAAAAATTAGTGAAATGGGAATATTAAAGAACATAGGA
TCCCAAAGTAGTCAAACTACTGGCCAAAATTCCTCTACTTTTATCTTTGT
CTTTCAGGAGTATGTGAGGCCACAGACCTTTACCTCGGTCAATTGGAAGA
TGTGTTGACCAATGTCACACCTCCAAAAGTTGCCGGATTCTTTGGTGAAC
CCATCCAGGTcagatttttgttttaaatttgataaCTTAACTTGCCTTTT
CAgattaaaactttcttttctccataactttttttttgctgagtaTGAAC
TGTTTATTTAAAAACACAGCTTCATTAGCTAAGCCATGTATcattgatcc
agtaaaaaatctgtttttccagaatgaaacaatgaaaatatagtTTACCA
ATGGGGAATTAGTTTCAGGATCTTTTAAGCGACTATTACCGTTGGGGTCT
TTATTGCACAGGAATCTTTATAACAAGTTAGCTACTTATACTAAATTGGC
GTTTTTCTGATCATATCATGTAGGGTGTCGGTGGTAGCGTTCAATACCCA
CGTGACTTTTTACAAAAGACCTACGAGAAGATTCACGCACGTGGTGGACT
TTGTGTGGCTGATGAGGTAgccatttttttatttccaaatttGTTTACAC
ATTCATTGTATAGTTCTTTATTCACCATTTCCCATGCTTTCGTGTAAACA
TTTCAAAGTCAATTATTCTGTCATTCACCAAAATCCATCCGGATTCATAT
CTTATAGTTTcatcagaaaattattttgcacAGAAGTAATCTATTATAAT
ATCTATAGAATTTAGTAAATGTTATTTGTTCTCCTTCAAAAAGGTTCAAA
CAGGTTTCGGACGTACTGGTTCACATTATTGGGGATTCCAAGGTTCTGGA
CTCAACCCTGACATCAGTAAGTGATTCGCTCTCCTGGTTTCTTTCTAATT
CTTGAAACGGAAATTTACAATTAATATCATAACATTTCCTGATAAATTCA
GTCAGGCTAAcaataaaagataaaagattTAGGCTTTAACGGGTGGTCAG
ATCTGAGATTTAGTGTGAATTAATAAACCAGATACTCTGGACGGGTTTCA
TAGAGTTTTTTCGATAAAGTGAAGTATTATATTTACTTACTTGTTGTTCA
CAGTCGTGTGCGCCAAGACCATCGCTAACGGATTACCAATGGCTTGCGTT
AtcacaacaaaagaaattgcTGACTCAATGAACGTTGCTCTTCCATTCAA
CACCTACTCCTCAAATCCAGTCTCTTGCGCCGCTGCTATCACCGCTCTCG
ATGTAAGCTCTCTCTCATGGAATCATTCAATTAAGGTTACATACCAGGTT
GATTTCATGGATTATGTTAACAGTTTTTCTCTGACCGCAATACTTGTTCG
TCTGATGATTTCCAATTACTTTAAACTCACGAGTGAACTTTTTTTCTGAc
gccaaaacttttttttagaaTTAATACTCGATTAAAAGCAATTACCTGAT
TTGATTAGATCCCTTGAATGGTCTTGAGTTCAGTTACAGTTGCACAAATA
ATGTGCTGAACCTTTCTACGGGATGTAAGACAGCATAAAAATTGGCACCT
TTACCAGTTTCCCAATATTCCGTTTCTATTTTGTGGCGATACGCCTTGTT
AATAAAGGCAGTTTCATAACGACGTTGTTTTCATTGTAGGTTATCGACGA
AGAAGGTTTACAAGAGAACTGTCAACGTGTTGGAACATATTGTTTGGAAG
AACTATCGAAGATCCGTGATGATTACGAGATTGTCGGGGATGTCCGTGGT
AAAGGATTGATGATCGGTATCGAAATGGTCGCCGATAAAAAGGTATGCGT
AAAGTTTGGTATGTCAGTTCAGTCGATATTATCCTCCTTGTCTCCTTGTG
TATTCAAATCTCAATCCTCTGTAAGGTCTATACCGACTTAATAGTTGCTT
ACGGATTACTATCAAAAGTATGTTAAATTTCTACAATAAAGGTTACCAAT
AATTTCACAATTATACCCTTTTCGAAGATAATGAGGTTCATTCTTTATTC
ACTTTCCAGACGAGAGCACCATTGCAACCAGAGAGAGTTGGAGATATCAT
CGAACGAACGAAAGATTACGGAGTCTTGTTTGGTAAAGGTGGACGATTTG
GACAGGTAGATTTTCTTCTCATCATGCTTTGATCTTTGTTGACCACCTCC
TAGTCAAAcaaacatttttcattttgatgtgTCTGGTTTAAGGTCTTGTT
TACCAATAGATCATCCACGTCGCAAATTAAGGATGTAGCTCATGCACACT
CCGTCGACTTAGTTATTGTACGTGATTAAAAATTAGCAGCAACTTTGGTT
CAGTGCGTTATAGTTGCACCAAAAGTTTCAGAACTTTTATGTCTCATGGT
CTAATAAAAACTGGAGCAAGAATTCATGTTTCTTCGAATGTCAAAGAGAG
TCGAAATTTAAGAAGTATGACTGTTTCTTCACTAGTTTGAATTACCTTAT
TAACTCGAAACTGGAATTATAGCGTCCACTGTGTCTTGTAGAAATTAGTT
GATTGCCCTAAATGACCAGAGTTGCAATCAAATTATGTTTTCCATTCAGG
TTCTTCGTATCAAACCACCAATGAACGTCACTAAAGAAGACATTGATTTC
GGACTTGCTGTTCTCAGACAATCTATCGAAGAACATCTCGCTCAATAGAA
GGCGATGTTGTGAAACATACCAACGTTGAACATACAATATCAATGCAGGG
TTCACAAGAAGACGAGACTATTGTGTATTCTGGTTAGATATACATCGTCC
CAGTAATTTTCGATGGAGCCTTGTCCTTATTGAAGAGCGTCATTGAAAAT
TCATGGACCGTACTGCTGTTCCACAggcaaaaaataaacaaagggAAGCA
TTATTCAGCACAGTTAAgtttataattttaaatcacCACGCCATTCCAAA
AAtgctcatttaaaaaaataatttgatattCACACCTTACGTCATTAATG
AGTTTTAGCAAAGATTGACAAAAGGGGTTCTCTAAGATGTCTATAGAATT
AATTCTTCCCNCGAGGTTCACTCTTTATTCCTTTTCCAGACGAGAGCACC
ATTGCAACCAGAGAGAGTTGGAGATATCATCGAACGAACGAAAGATTACG
GAGTCTTGTTCGGTAAAGGTGGACGATTTGGACAGGTAGATTTTCTTCTC
AGCATGCTATGATCTTAGTTGACCACCTCCTAGTCAAACAAACAGTTTTC
ATTTTGATGTGTCTGGTTTAAGGTCTAGTTTACCTATAGATCATCCACGT
CGCAAATTAAGGATGTAGCTCATGCACACTCCGTCGACTTAGTTATTGTA
CGTGATTAAAAATTAGCAGTAAGTTTGGTTCAGTGCGTTATAGTTGCACC
AAAAGTTTCAGAACTTTTATGTCTCATGGTCTAATAAAAACTTGAGCGAG
AATTCATATTTCTTCAAATGTCAAAGAGAGTCGAAATTTAAGAAGTATGA
CTGTTTCTTCACTAGTTTGAATTACCTTATTAACTCGAAACTGGAATTAT
AGCGTCCACTGTGTCTTGTAGAAATTAGTTGATTGCCCTAAATGACCAGA
GTTGCAATCAAATTATGTTTTCCATTCAGGTTCTTCGTATCAAACCACCA
ATGAACGTCACTAAAGAAGACATTGATTTCGGACTTGCTGTTCTCAGACA
ATCTATCGAAGAACATCTCGCTCAATAGAAGGCGATGTTGTGAAACATAC
CAACGTTGAACATACAATATCAATGCAGGGTTCACAAGAAGACGAGACTA
TTGTGTATTCTGGTTAGATATACATCGTCCCAGTAATTTTCGATGGAGCC
TTGTCCTTATTGAAGAGCGTCATTGAAAATTCATGGACCGTACTGCTGTT
CCACAGTggcaaaaaataaacaaagggAAGCATTATTCAGCACAGTTAAg
tttataattttaaatcacCACGCCATTCCAAAAAtactcatttaaaaaaa
tatacgcTCAAGGAACTAATTTGATATTCACACCTTACGTCATTAATGAG
TTTTAGCAAAGATTGACAAAAGGGGTTCTCTAAGATGTCTATAGAATTAA
TTCTTCCCTCGCTATTTCTTCACTTGAGAATAAATTTCACATAAGGgtaa
ttttcatcaattttctaTATAATGCCGAAATAGGAGAtctaattatttca
aaatatacaaagatttatataattaattttataatttttgtcgTTGTAAA
TATAATGAATACTCATTGACACAAAGTTCAAAACgaattgtttttcttct
ttggtTTTCCTGAATGGCA

Gene-mRNA-Prot

This transcript is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
XLOC_006972	XLOC_006972	Clytia hemisphaerica	gene

The following exon feature(s) are a part of this transcript:

Position

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
sc0000144	supercontig	sc0000144:295699..306117 +

Expression

Values :

    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	8.68955	11.8379	11.0934	7.28512	5.82918	2.4722	0.89618	3.60886	17.3485	6.06218	14.1066	14.321	5.05012	12.3742	13.2879	20.2582	7.2245	6.77982	0.110982	7.79262	0	1.21725	0.899669	0.758706	11.9529	2.9763

Blast

[Close]

BLAST of TCONS_00012420 vs. Swiss-Prot (Human)
Match: AGT2 (Alanine--glyoxylate aminotransferase 2, mitochondrial OS=Homo sapiens GN=AGXT2 PE=1 SV=1)

HSP 1 Score: 499.59 bits (1285), Expect = 1.254e-167
Identity = 237/467 (50.75%), Postives = 305/467 (65.31%), Query Frame = 1

Query:  481 MPSTDFQPAEFKGMPYDEARAAHAKNLFPHVSERMLLYKRPVYLTQGHMQWLWDSEGKRYLDLFAGIATCGVGHCHPKITESIQDQASKLVHCSNLYINAKQAEYAEKLLTKLPEKYNRVYFVNSGSEANDFAMTMMRVYTGSWDIIGLRNAYHGASPTTLGITNMGQYKFPTPQNFGCHTIPNPDVYKGIWGGKNCRDSPVQADRDCDCAEGVCEATDLYLGQLEDVLTNVTPPKVAGFFGEPIQGVGGSVQYPRDFLQKTYEKIHARGGLCVADEVQTGFGRTGSHYWGFQGSGLNPDIIVCAKTIANGLPMACVITTKEIADSMNVALP-FNTYSSNPVSCAAAITALDVIDEEGLQENCQRVGTYCLEELSKIRDDYEIVGDVRGKGLMIGIEMVADKKTRAPLQPERVGDIIERTKDYGVLFGKGGRFGQVLRIKPPMNVTKEDIDFGLAVLRQSIEEHLAQ 1878
            MP  DF P  ++ + Y+     H ++L P V+     +++P+ L QGHM+WL+D+EG RYLD F+GI T  VGHCHPK+    Q Q  +L H S ++ +    EYAEKL   LPE    ++ VNSGSEAN+ AM M R ++ + DII  R AYHG SP TLG+TN+G YK   P   GC     PDV++G WGG +CRDSPVQ  R C CA   C+A D Y+ Q +D L+      +AGFF EPIQGV G VQYP+ FL++ +E + ARGG+C+ADEVQTGFGR GSH+WGFQ   + PDI+  AK I NG PMA VITT EIA S+   L  FNT+  NP++CA     L+VI EE LQEN Q VGTY L + +K+RD++EIVGDVRGKGLMIGIEMV DK +  PL  E V  I E  K  G+L G+G  F Q  RI P M +TK ++DF + V R ++ +H+ +
Sbjct:   48 MPPCDFMPERYQSLGYNRVLEIHKEHLSPVVTA---YFQKPLLLHQGHMEWLFDAEGSRYLDFFSGIVTVSVGHCHPKVNAVAQKQLGRLWHTSTVFFHPPMHEYAEKLAALLPEPLKVIFLVNSGSEANELAMLMARAHSNNIDIISFRGAYHGCSPYTLGLTNVGTYKMELPGGTGCQPTMCPDVFRGPWGGSHCRDSPVQTIRKCSCAPDCCQAKDQYIEQFKDTLSTSVAKSIAGFFAEPIQGVNGVVQYPKGFLKEAFELVRARGGVCIADEVQTGFGRLGSHFWGFQTHDVLPDIVTMAKGIGNGFPMAAVITTPEIAKSLAKCLQHFNTFGGNPMACAIGSAVLEVIKEENLQENSQEVGTYMLLKFAKLRDEFEIVGDVRGKGLMIGIEMVQDKISCRPLPREEVNQIHEDCKHMGLLVGRGSIFSQTFRIAPSMCITKPEVDFAVEVFRSALTQHMER 511

The following BLAST results are available for this feature:

BLAST of TCONS_00012420 vs. Swiss-Prot (Human)

BLAST of TCONS_00012420 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1


Match Name	E-value	Identity	Description
AGT2	1.254e-167	50.75	Alanine--glyoxylate aminotransferase 2, mitochondr...	[more]

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TCONS_00012420 (transcript) - C. hemisphaerica