TCONS_00012421 (transcript) - C. hemisphaerica

Overview


Name	TCONS_00012421
Unique Name	TCONS_00012421
Type	transcript
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	2364

Sequence

The following sequences are available for this feature:

transcript sequence
transcript from alignment at sc0000144:295807..306117+

transcript sequence

>TCONS_00012421 ID=TCONS_00012421|Name=TCONS_00012421|organism=Clytia hemisphaerica|type=transcript|length=2364bp
GTTAGGAGACATCTAACTCGAAGGTTATCAATGCCATCAATAATTCATCT
CGAGAAAAGAAGGGGTTTAAGACAGCAAGCTTGCTATTATACTTTTTACT
AGCTGATATCGGATATCTCAAAGTTGAgggaaaacaaaaagattttgcAA
TACTttccgaaaatcttttttgagatCTGCTTACACACTCTTGTTTAAGG
TAACATACTTTCGGACGACACGACGTTGTGCAGACGACAGCTAGACAGAA
CTTTCACCGATATTTGACGACCAAATACAACAACCATGGCTCTTTTCCTC
AGAAAACACACAGGAACTCCTTTCAAACATGCACAAGTATTATCCCGATC
ATTTGCAGTTCGTGGTGTTGAAATGCCTTCAACTGATTTCCAACCGGCTG
AATTCAAGGGAATGCCATACGATGAAGCACGTGCTGCACACGCCAAAAAC
CTTTTCCCTCATGTCTCCGAACGTATGTTGTTATACAAAAGACCTGTCTA
TCTCACTCAGGGTCATATGCAATGGTTGTGGGATAGTGAAGGCAAACGAT
ATTTAGATTTATTTGCTGGCATTGCTACTTGTGGTGTTGGACACTGTCAC
CCGAAAATTACAGAATCGATTCAAGATCAAGCATCAAAATTGGTGCATTG
CTCAAACTTGTACATCAATGCTAAACAAGCGGAATATGCTGAAAAATTGT
TGACAAAATTGCCCGAAAAATATAACCGTGTATACTTTGTGAACAGTGGA
TCAGAAGCGAATGATTTCGCTATGACCATGATGAGAGTTTACACTGGAAG
CTGGGATATCATCGGATTGAGAAACGCTTACCACGGAGCCAGTCCCACCA
CTCTTGGCATCACCAACATGGGTCAATACAAATTCCCAACTCCACAAAAC
TTTGGTTGTCACACTattcCAAACCCAGATGTTTACAAAGGAATTTGGGG
CGGAAAGAATTGCCGCGATTCTCCCGTTCAAGCTGACAGAGATTGTGATT
GTGCTGAAGGAGTATGTGAGGCCACAGACCTTTACCTCGGTCAATTGGAA
GATGTGTTGACCAATGTCACACCTCCAAAAGTTGCCGGATTCTTTGGTGA
ACCCATCCAGGGTGTCGGTGGTAGCGTTCAATACCCACGTGACTTTTTAC
AAAAGACCTACGAGAAGATTCACGCACGTGGTGGACTTTGTGTGGCTGAT
GAGGTTCAAACAGGTTTCGGACGTACTGGTTCACATTATTGGGGATTCCA
AGGTTCTGGACTCAACCCTGACATCATCGTGTGCGCCAAGACCATCGCTA
ACGGATTACCAATGGCTTGCGTTAtcacaacaaaagaaattgcTGACTCA
ATGAACGTTGCTCTTCCATTCAACACCTACTCCTCAAATCCAGTCTCTTG
CGCCGCTGCTATCACCGCTCTCGATGTTATCGACGAAGAAGGTTTACAAG
AGAACTGTCAACGTGTTGGAACATATTGTTTGGAAGAACTATCGAAGATC
CGTGATGATTACGAGATTGTCGGGGATGTCCGTGGTAAAGGATTGATGAT
CGGTATCGAAATGGTCGCCGATAAAAAGACGAGAGCACCATTGCAACCAG
AGAGAGTTGGAGATATCATCGAACGAACGAAAGATTACGGAGTCTTGTTT
GGTAAAGGTGGACGATTTGGACAGGTTCTTCGTATCAAACCACCAATGAA
CGTCACTAAAGAAGACATTGATTTCGGACTTGCTGTTCTCAGACAATCTA
TCGAAGAACATCTCGCTCAATAGAAGGCGATGTTGTGAAACATACCAACG
TTGAACATACAATATCAATGCAGGGTTCACAAGAAGACGAGACTATTGTG
TATTCTGGTTAGATATACATCGTCCCAGTAATTTTCGATGGAGCCTTGTC
CTTATTGAAGAGCGTCATTGAAAATTCATGGACCGTACTGCTGTTCCACA
GTggcaaaaaataaacaaagggAAGCATTATTCAGCACAGTTAAgtttat
aattttaaatcacCACGCCATTCCAAAAAtactcatttaaaaaaatatac
gcTCAAGGAACTAATTTGATATTCACACCTTACGTCATTAATGAGTTTTA
GCAAAGATTGACAAAAGGGGTTCTCTAAGATGTCTATAGAATTAATTCTT
CCCTCGCTATTTCTTCACTTGAGAATAAATTTCACATAAGGgtaattttc
atcaattttctaTATAATGCCGAAATAGGAGAtctaattatttcaaaata
tacaaagatttatataattaattttataatttttgtcgTTGTAAATATAA
TGAATACTCATTGACACAAAGTTCAAAACgaattgtttttcttctttggt
TTTCCTGAATGGCA

Run BLAST on NCBI

transcript from alignment at sc0000144:295807..306117+

Legend: exon

Hold the cursor over a type above to highlight its positions in the sequence below.

>TCONS_00012421 ID=TCONS_00012421|Name=TCONS_00012421|organism=Clytia hemisphaerica|type=transcript|length=10311bp|location=Sequence derived from alignment at sc0000144:295807..306117+ (Clytia hemisphaerica)
GTTAGGAGACATCTAACTCGAAGGTTATCAATGCCATCAATAATTCATCT
CGAGAAAAGAAGGGGTTTAAGACAGCAAGCTTGCTATTATACTTTTTACT
AGCTGATATCGGATATCTCAAAGTTGAgggaaaacaaaaagattttgcAA
TACTttccgaaaatcttttttgagatCTGCTTACACACTCTTGTTTAAGG
TAACATACTTTCGGACGACACGACGTTGTGCAGACGACAGCTAGACAGAA
CTTTCACCGATATTTGACGACCAAATACAACAACCATGGCTCTTTTCCTC
AGAAAACACACAGGTATATTCCGCTTTTCACTATTTTAGTTCGAGAAAGG
TTGGTGGGATGGGAATATTTGGGTTTTAAGCCAGGCTGgctcttttgaaa
tatttctgtTGCTTTGAGTTTTGATGTAATACTGTACAGTTTTGAGTTGT
AGCTGCATATGGTAATACACTTAAAATTTTCCttcttctaaaattttcat
aGGAACTCCTTTCAAACATGCACAAGTATTATCCCGATCATTTGCAGTTC
GTGGTGTTGAAATGCCTTCAACTGATTTCCAACCGGCTGAATTCAAGGTA
TCATTTTACTGTATGTTTGTCTTCAATAAAGGTTTCTGTCTTGGTAGATT
CGAAGTGTATGTTATATTTGCAAtagtttgaaaatttgtgtCTAGTAGGT
CTCGCTTGTGTTCTTTCAACcgtatttttcttcaaaacttttgTAAATTT
CTGTTATATCATTGCGAACATGAAGTAATTAGATAGACGGGAGTAATGGA
GCTATGGAAAAGCAAATTTTGCTGAGTCATTATGTCAAatgatttgcata
atttttcatacattcaacttattatttttttgttatcaACTCAATTATTT
TCTTTACTGCTAAATCACAAAACGCTTATCTAATCATGGTATCTTTTCAC
GGCTTTCACGGCAAATCCTACTCGTACTATAACAACACAAAAACTTCATA
TCGAAActcaaacatttcaaaattttactagTAGAAAAACAAAGTGCTGA
NAATCCTACTCGTACTATAACAACACAAAAACTTCATATCGAAActcaaa
catttcaaaattttactagTAGAAAAACAAAGTGCTGACCGCAATAGAGA
AAACATTCCTAGTTATTTTTTGCTTGACTAATAAGAACTGCTATTTACAC
AAGCAACGATTCCCTTTTTTGGATAATCGAGGATTAAGCAATAAAGGAAG
GATGGGGCTGGCCTGCATGTGGCAAACGATCTAGGCGGAAAATGACCACC
ATCATACCCTTGACTTTTTACCCTTGACAGTAAATTTGACAATTTACTGA
TTGAAATATTCCAGTCATATGTAATCATTTTGAAGCTTAAAAATCATGCG
CTCACGATTATTTGTTTCAAAATCATGTAACTATGGTTCTCCTGGGGACA
TACACGCTGACGCTCGCTAATTTGGACTTGGACGCACGGCGAGAATCTTA
TTTCCTCGAATTACAAAGAGATTCGAATTGTAGAAAGCATTTTAGAAGGG
TTTTTCTTTGCCAGGGACTGCAaataagttcgaataagcgaaagTCTACT
GTActtcaaaaaggttttttcctccagaaaatatgaaatacaTAGATAGG
CTGAAGTATTTTTCTAATGAGTATGAAAATCTTACGTCAGCTGCTGTGTT
CAGGTGACCTCCTTAGAAAGGGTCAGCAGAAAATTTCCTCTAGTAAAAAT
ACTGAGtgtccaattttccattgttcgGTGGGCTATGCAATATTTACTTT
AAAGACGTGATTGCGAATTTCGAGGAGAAATTTGATATGGGTCAGAACTC
TGTTTGTCAACTGCTTTTAGAAAAGTACATGAAGTTTGTTGACAAGTCAT
ATTCATATGCTGATAAGCCAAAATACAAAAAGGAGTACTCGAGATATCCC
GATTAAAACCTTAAGATTACAGATCGCCGATGAGATTGCCAGAATCTTGA
AATTCTTTCTTCAAGGGCAAtgaaatctttttctcaaaactttattttta
gctCTACTAtattttaccttccaaaaaatTACGATGCAAAGAATAATTgt
ccttgaaaatttgaaatattcctCTTCGTAAAGTTTCATTCAATTCTTTA
TACAATTTTGAACGCTTTTTTAAGTGGTCAATTCAATCCTTGGTACTGTA
GGCTTTAATACTTAACGAATCCCTAATCGAATATGATTCCTTGAACTATT
TCAGGGAATGCCATACGATGAAGCACGTGCTGCACACGCCAAAAACCTTT
TCCCTCATGTCTCCGAACGTATGTTGTTATACAAAAGACCTGTCTATCTC
ACTCAGGTAAGCGtgaaataaaatattaatttgtTAGTCTGAAGGTGACT
GGCCCAGCTTCGGGCCTTTCACTAGCATGTCAATGTCCGTGATATGCTGT
ATTTCCCTTTTTCGAAGAAGCGGTGCTTTGttaatttaagtttattttga
aaaaaacggcgcCTTGTAACAATCAACGAACAAATATTTGACTATTCCTA
TGTTGCTTCGGCTTCTTGTTATTTGTTGGagagcattttttcgaatttcg
aataTAAACACCTTAAATACCTACCGGATCCGccacaaaaaaagtttctc
tctttaaaaccaattttctcgaattctaaaaatttcgaaagaatcattcc
tatttcattggaaagaaaaaagataaacttaaattttgatagtttgttta
ttaaatttgattctttgaatcaaaaatgttcaattgaataaaaaagttgc
tTTCAGAAAGTGCTTGAGAACGTTAAAAATCGGTCTATCAAGTTAAACAA
AGGGAAACCTTtttgtggtgcacccggtagcAATTTCAATATAAACTGTC
CACCATCCCCGGATTCTTTAAACAGTTGATTCTTGATTTTTAGGGTCATA
TGCAATGGTTGTGGGATAGTGAAGGCAAACGATATTTAGATTTATTTGCT
GGCATTGCTACTTGTGGTGTTGGACACTGTCACCCGTAAGTTAAGAAAAT
AATATCTTGCTTCTCGAATACGACATTTGGTAGTCCATCTCGTTCATTTT
TTGATAGATGATTCCCCCTATTGGCACGAATTCAAAGCAACGTTTAACAA
TAACGTTTACACATTCTTCATTTTACTTCAAAACGCTAGAAAGGTATCAC
CGGATCATTAATTCAATGTTGCTACAACTTATAGGTATTTATACATAATT
AAGGTCTGGATGGGAAAAATAATCACCCGCTAGGTTCTTGTGGTCATCTT
TATCAGGAAACTGGGCTACAGTAACTAATAACCAGCATCGACTATCGAAT
ATTTTGAGTGACTTCAGATTTCTCTTTTAGGAAAATTACAGAATCGATTC
AAGATCAAGCATCAAAATTGGTGCATTGCTCAAACTTGTACATCAATGCT
AAACAAGCGGAATATGCTGAAAAATTGTTGACAAAATTGCCCGAAAAATA
TAACGTAAGAAAAGCCTTTCTTCTAAGCCTTATCATTAGCTTTGTAAAAA
GGGTATCCCTGTAAGCCGAGAAATTTCATGACAGTCTCCTCTGTTATTTT
GAGCtagattttcaagttttgccTGATTTGGTTTGGATACAAAAATTCTA
TCTTTCCAAAAAGGTTGTCTATCATAGTAAATAACAATGACGGGAGGCCG
AAAATTCGGTAGAACATTCAACAATCCAAAATGTTAATGTCTTTCTACTT
ATCCCTTAAATATTTTCCCTTTCATTCTACAGCGTGTATACTTTGTGAAC
AGTGGATCAGAAGCGAATGATTTCGCTATGACCATGATGAGAGTTTACAC
TGGAAGCTGGGATATCATCGGATTGAGGTATGATGTGTAGATCTTTATAG
AAGAGTTCTTTCAGCTTTGATAAGGTTATGTAACTTACCGTGAAATCCAC
CATTATTGAATTTCTCCCAATCAAAAGTTTTTCTACCGGTATATGTGCTA
TTCGAAATGCATTAAACTCAGAAAACGTGCAAAAGAATACCTGCACTAAA
TCAATAGTCATCCATCTCGCTAGATTTAAAATGGTAATGAGTGACGATAA
AGGCTCATCCCATTACTAATATTCTTATGACCTTTAGACTTCCAATAGGC
CCTAATACCCCTCAAACAAGTATTTCTTCATTTCTActctatttttgaaa
tatttccttaTCATTTTCAGAAACGCTTACCACGGAGCCAGTCCCACCAC
TCTTGGCATCACCAACATGGGTCAATACAAATTCCCAACTCCACAAAACT
TTGGTTGTCACACTGTAAGAATCGGCAATGATCATTTTTTCGCCATCCGA
atgctctctctctctctttgcAGTCTGTTGAAAATTTTCGCATGCATGCT
CCTAACCTCCTAACCTCATCAAAATTATACCTCTGAATCTAAATAGACCA
ACATaatatatttcccttttttcatttcagattcCAAACCCAGATGTTTA
CAAAGGAATTTGGGGCGGAAAGAATTGCCGCGATTCTCCCGTTCAAGTat
gaattttaacaaaattaactttaaaatttAACTAAATTTTACTGCTACAT
AGATTCGTTCAAGAAATAACTTTCAATATGCAACAATAAATTTAgactag
ccataattttcattaaagtgccaccgcagaataacgatcaaataagttgt
tgaatttggaaagaaatgttactgatagccgatagtctacaaatattagc
aatttgtgtccatctcatagatatcttcttatagagataagataaagtta
tttatctgttttttttgtcatctcNACGATGTGTAGATCTTTATAGAAAA
GTTCTTTCAGCTTTGATAAGGTTATGTAACTTACCGTGAAATCCACCATT
ATTGAATTTCTCCCAATCAAAAGTTTTTCTACCGGTATATGTGCTNCAAT
GGCTTGTTTATGtcatactaaacgctactgtGCTAAACTGCCATTTTACT
GTAATAGTCAAACGACAAGTCTTAgaaaggataaaaatttctaatttccg
ttgctcagagcggttaataactagttgtggtttaaatagggaatttccca
acaaaaaaggaatttcccttaattcgactccctgaggtaataaaaaaaga
catatagaggtttgaaaatgggtaatcaaattaaaaaaaatccggaaaag
tgtttttaatgatgataaaacaatagaaatacagtcaagctaagaatgtt
accggtacaccatttaaccggaactaaaatactgaNCTCTCTTTGCAGTC
TGTTGAAAAAACCTCCTAACCTCATCAAAATTATACCTCTGAATCTAAAT
AGACCAACATaatatatttcccttttttcatttcagattcCAAACCCAGA
TGTTTACAAAGGAATTTGGGGCGGAAAGAATTGCCGCGATTCTCCCGTTC
AAGTatgaattttaacaaaattaactttaaaatttAACTAAATTTTACTG
CTACATAGATTCGTTCAAGAAATAACTTTCAATATGCAACAATAGATTTA
GATTAGATTGCCCACCAATGTGGTTCATAATAATCTCTATTATTATAATC
TACTATTTTTTAGGCTGACAGAGATTGTGATTGTGCTGAAGGTATTTAAT
TCTTTTTCTAAACGAGTTCAGAATATTTTGCCATTTCGAGGGTATTTTAg
cgttttgcagaatttaaaaTTCAGGCGAGAATGACATTTCTAGGCTTTCT
ACTTTACCTAATgggatatttcgatttgggaggagTATAATGGCTTCCag
actatattctcagcctaggGGGACCATAAAtaagcttttggatcctcaga
ccAGAGTCTTAAGTCTCCTGtttaaactcagagttaaaactgtACTTTCC
AACCCTAAGTTAAGGCACTTAAAACTACTtgccctttttttaattttgca
agGAAATTCTTTTTGTGCAAAATGTTATAGGCCATAGATAGTTTTGTGTA
CATAGAAAAATTAGTGAAATGGGAATATTAAAGAACATAGGATCCCAAAG
TAGTCAAACTACTGGCCAAAATTCCTCTACTTTTATCTTTGTCTTTCAGG
AGTATGTGAGGCCACAGACCTTTACCTCGGTCAATTGGAAGATGTGTTGA
CCAATGTCACACCTCCAAAAGTTGCCGGATTCTTTGGTGAACCCATCCAG
GTcagatttttgttttaaatttgataaCTTAACTTGCCTTTTCAgattaa
aactttcttttctccataactttttttttgctgagtaTGAACTGTTTATT
TAAAAACACAGCTTCATTAGCTAAGCCATGTATcattgatccagtaaaaa
atctgtttttccagaatgaaacaatgaaaatatagtTTACCAATGGGGAA
TTAGTTTCAGGATCTTTTAAGCGACTATTACCGTTGGGGTCTTTATTGCA
CAGGAATCTTTATAACAAGTTAGCTACTTATACTAAATTGGCGTTTTTCT
GATCATATCATGTAGGGTGTCGGTGGTAGCGTTCAATACCCACGTGACTT
TTTACAAAAGACCTACGAGAAGATTCACGCACGTGGTGGACTTTGTGTGG
CTGATGAGGTAgccatttttttatttccaaatttGTTTACACATTCATTG
TATAGTTCTTTATTCACCATTTCCCATGCTTTCGTGTAAACATTTCAAAG
TCAATTATTCTGTCATTCACCAAAATCCATCCGGATTCATATCTTATAGT
TTcatcagaaaattattttgcacAGAAGTAATCTATTATAATATCTATAG
AATTTAGTAAATGTTATTTGTTCTCCTTCAAAAAGGTTCAAACAGGTTTC
GGACGTACTGGTTCACATTATTGGGGATTCCAAGGTTCTGGACTCAACCC
TGACATCAGTAAGTGATTCGCTCTCCTGGTTTCTTTCTAATTCTTGAAAC
GGAAATTTACAATTAATATCATAACATTTCCTGATAAATTCAGTCAGGCT
AAcaataaaagataaaagattTAGGCTTTAACGGGTGGTCAGATCTGAGA
TTTAGTGTGAATTAATAAACCAGATACTCTGGACGGGTTTCATAGAGTTT
TTTCGATAAAGTGAAGTATTATATTTACTTACTTGTTGTTCACAGTCGTG
TGCGCCAAGACCATCGCTAACGGATTACCAATGGCTTGCGTTAtcacaac
aaaagaaattgcTGACTCAATGAACGTTGCTCTTCCATTCAACACCTACT
CCTCAAATCCAGTCTCTTGCGCCGCTGCTATCACCGCTCTCGATGTAAGC
TCTCTCTCATGGAATCATTCAATTAAGGTTACATACCAGGTTGATTTCAT
GGATTATGTTAACAGTTTTTCTCTGACCGCAATACTTGTTCGTCTGATGA
TTTCCAATTACTTTAAACTCACGAGTGAACTTTTTTTCTGAcgccaaaac
ttttttttagaaTTAATACTCGATTAAAAGCAATTACCTGATTTGATTAG
ATCCCTTGAATGGTCTTGAGTTCAGTTACAGTTGCACAAATAATGTGCTG
AACCTTTCTACGGGATGTAAGACAGCATAAAAATTGGCACCTTTACCAGT
TTCCCAATATTCCGTTTCTATTTTGTGGCGATACGCCTTGTTAATAAAGG
CAGTTTCATAACGACGTTGTTTTCATTGTAGGTTATCGACGAAGAAGGTT
TACAAGAGAACTGTCAACGTGTTGGAACATATTGTTTGGAAGAACTATCG
AAGATCCGTGATGATTACGAGATTGTCGGGGATGTCCGTGGTAAAGGATT
GATGATCGGTATCGAAATGGTCGCCGATAAAAAGGTATGCGTAAAGTTTG
GTATGTCAGTTCAGTCGATATTATCCTCCTTGTCTCCTTGTGTATTCAAA
TCTCAATCCTCTGTAAGGTCTATACCGACTTAATAGTTGCTTACGGATTA
CTATCAAAAGTATGTTAAATTTCTACAATAAAGGTTACCAATAATTTCAC
AATTATACCCTTTTCGAAGATAATGAGGTTCATTCTTTATTCACTTTCCA
GACGAGAGCACCATTGCAACCAGAGAGAGTTGGAGATATCATCGAACGAA
CGAAAGATTACGGAGTCTTGTTTGGTAAAGGTGGACGATTTGGACAGGTA
GATTTTCTTCTCATCATGCTTTGATCTTTGTTGACCACCTCCTAGTCAAA
caaacatttttcattttgatgtgTCTGGTTTAAGGTCTTGTTTACCAATA
GATCATCCACGTCGCAAATTAAGGATGTAGCTCATGCACACTCCGTCGAC
TTAGTTATTGTACGTGATTAAAAATTAGCAGCAACTTTGGTTCAGTGCGT
TATAGTTGCACCAAAAGTTTCAGAACTTTTATGTCTCATGGTCTAATAAA
AACTGGAGCAAGAATTCATGTTTCTTCGAATGTCAAAGAGAGTCGAAATT
TAAGAAGTATGACTGTTTCTTCACTAGTTTGAATTACCTTATTAACTCGA
AACTGGAATTATAGCGTCCACTGTGTCTTGTAGAAATTAGTTGATTGCCC
TAAATGACCAGAGTTGCAATCAAATTATGTTTTCCATTCAGGTTCTTCGT
ATCAAACCACCAATGAACGTCACTAAAGAAGACATTGATTTCGGACTTGC
TGTTCTCAGACAATCTATCGAAGAACATCTCGCTCAATAGAAGGCGATGT
TGTGAAACATACCAACGTTGAACATACAATATCAATGCAGGGTTCACAAG
AAGACGAGACTATTGTGTATTCTGGTTAGATATACATCGTCCCAGTAATT
TTCGATGGAGCCTTGTCCTTATTGAAGAGCGTCATTGAAAATTCATGGAC
CGTACTGCTGTTCCACAggcaaaaaataaacaaagggAAGCATTATTCAG
CACAGTTAAgtttataattttaaatcacCACGCCATTCCAAAAAtgctca
tttaaaaaaataatttgatattCACACCTTACGTCATTAATGAGTTTTAG
CAAAGATTGACAAAAGGGGTTCTCTAAGATGTCTATAGAATTAATTCTTC
CCNCGAGGTTCACTCTTTATTCCTTTTCCAGACGAGAGCACCATTGCAAC
CAGAGAGAGTTGGAGATATCATCGAACGAACGAAAGATTACGGAGTCTTG
TTCGGTAAAGGTGGACGATTTGGACAGGTAGATTTTCTTCTCAGCATGCT
ATGATCTTAGTTGACCACCTCCTAGTCAAACAAACAGTTTTCATTTTGAT
GTGTCTGGTTTAAGGTCTAGTTTACCTATAGATCATCCACGTCGCAAATT
AAGGATGTAGCTCATGCACACTCCGTCGACTTAGTTATTGTACGTGATTA
AAAATTAGCAGTAAGTTTGGTTCAGTGCGTTATAGTTGCACCAAAAGTTT
CAGAACTTTTATGTCTCATGGTCTAATAAAAACTTGAGCGAGAATTCATA
TTTCTTCAAATGTCAAAGAGAGTCGAAATTTAAGAAGTATGACTGTTTCT
TCACTAGTTTGAATTACCTTATTAACTCGAAACTGGAATTATAGCGTCCA
CTGTGTCTTGTAGAAATTAGTTGATTGCCCTAAATGACCAGAGTTGCAAT
CAAATTATGTTTTCCATTCAGGTTCTTCGTATCAAACCACCAATGAACGT
CACTAAAGAAGACATTGATTTCGGACTTGCTGTTCTCAGACAATCTATCG
AAGAACATCTCGCTCAATAGAAGGCGATGTTGTGAAACATACCAACGTTG
AACATACAATATCAATGCAGGGTTCACAAGAAGACGAGACTATTGTGTAT
TCTGGTTAGATATACATCGTCCCAGTAATTTTCGATGGAGCCTTGTCCTT
ATTGAAGAGCGTCATTGAAAATTCATGGACCGTACTGCTGTTCCACAGTg
gcaaaaaataaacaaagggAAGCATTATTCAGCACAGTTAAgtttataat
tttaaatcacCACGCCATTCCAAAAAtactcatttaaaaaaatatacgcT
CAAGGAACTAATTTGATATTCACACCTTACGTCATTAATGAGTTTTAGCA
AAGATTGACAAAAGGGGTTCTCTAAGATGTCTATAGAATTAATTCTTCCC
TCGCTATTTCTTCACTTGAGAATAAATTTCACATAAGGgtaattttcatc
aattttctaTATAATGCCGAAATAGGAGAtctaattatttcaaaatatac
aaagatttatataattaattttataatttttgtcgTTGTAAATATAATGA
ATACTCATTGACACAAAGTTCAAAACgaattgtttttcttctttggtTTT
CCTGAATGGCA

Gene-mRNA-Prot

This transcript is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
XLOC_006972	XLOC_006972	Clytia hemisphaerica	gene

The following exon feature(s) are a part of this transcript:

Position

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
sc0000144	supercontig	sc0000144:295807..306117 +

Expression

Values :

    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	2.47116	2.57242	4.78577	6.42839	16.5361	18.5261	16.5995	7.01252	22.1563	28.9089	0	0	0	0	0	0	0.00367181	1.47991e-07	2.48087	0	2.74492	1.19225	3.12252e-07	1.19063	0	0

Blast

[Close]

BLAST of TCONS_00012421 vs. Swiss-Prot (Human)
Match: AGT2 (Alanine--glyoxylate aminotransferase 2, mitochondrial OS=Homo sapiens GN=AGXT2 PE=1 SV=1)

HSP 1 Score: 499.59 bits (1285), Expect = 4.277e-168
Identity = 237/467 (50.75%), Postives = 305/467 (65.31%), Query Frame = 1

Query:  373 MPSTDFQPAEFKGMPYDEARAAHAKNLFPHVSERMLLYKRPVYLTQGHMQWLWDSEGKRYLDLFAGIATCGVGHCHPKITESIQDQASKLVHCSNLYINAKQAEYAEKLLTKLPEKYNRVYFVNSGSEANDFAMTMMRVYTGSWDIIGLRNAYHGASPTTLGITNMGQYKFPTPQNFGCHTIPNPDVYKGIWGGKNCRDSPVQADRDCDCAEGVCEATDLYLGQLEDVLTNVTPPKVAGFFGEPIQGVGGSVQYPRDFLQKTYEKIHARGGLCVADEVQTGFGRTGSHYWGFQGSGLNPDIIVCAKTIANGLPMACVITTKEIADSMNVALP-FNTYSSNPVSCAAAITALDVIDEEGLQENCQRVGTYCLEELSKIRDDYEIVGDVRGKGLMIGIEMVADKKTRAPLQPERVGDIIERTKDYGVLFGKGGRFGQVLRIKPPMNVTKEDIDFGLAVLRQSIEEHLAQ 1770
            MP  DF P  ++ + Y+     H ++L P V+     +++P+ L QGHM+WL+D+EG RYLD F+GI T  VGHCHPK+    Q Q  +L H S ++ +    EYAEKL   LPE    ++ VNSGSEAN+ AM M R ++ + DII  R AYHG SP TLG+TN+G YK   P   GC     PDV++G WGG +CRDSPVQ  R C CA   C+A D Y+ Q +D L+      +AGFF EPIQGV G VQYP+ FL++ +E + ARGG+C+ADEVQTGFGR GSH+WGFQ   + PDI+  AK I NG PMA VITT EIA S+   L  FNT+  NP++CA     L+VI EE LQEN Q VGTY L + +K+RD++EIVGDVRGKGLMIGIEMV DK +  PL  E V  I E  K  G+L G+G  F Q  RI P M +TK ++DF + V R ++ +H+ +
Sbjct:   48 MPPCDFMPERYQSLGYNRVLEIHKEHLSPVVTA---YFQKPLLLHQGHMEWLFDAEGSRYLDFFSGIVTVSVGHCHPKVNAVAQKQLGRLWHTSTVFFHPPMHEYAEKLAALLPEPLKVIFLVNSGSEANELAMLMARAHSNNIDIISFRGAYHGCSPYTLGLTNVGTYKMELPGGTGCQPTMCPDVFRGPWGGSHCRDSPVQTIRKCSCAPDCCQAKDQYIEQFKDTLSTSVAKSIAGFFAEPIQGVNGVVQYPKGFLKEAFELVRARGGVCIADEVQTGFGRLGSHFWGFQTHDVLPDIVTMAKGIGNGFPMAAVITTPEIAKSLAKCLQHFNTFGGNPMACAIGSAVLEVIKEENLQENSQEVGTYMLLKFAKLRDEFEIVGDVRGKGLMIGIEMVQDKISCRPLPREEVNQIHEDCKHMGLLVGRGSIFSQTFRIAPSMCITKPEVDFAVEVFRSALTQHMER 511

The following BLAST results are available for this feature:

BLAST of TCONS_00012421 vs. Swiss-Prot (Human)

BLAST of TCONS_00012421 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1


Match Name	E-value	Identity	Description
AGT2	4.277e-168	50.75	Alanine--glyoxylate aminotransferase 2, mitochondr...	[more]

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TCONS_00012421 (transcript) - C. hemisphaerica